Array 1 57-270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAM010000037.1 Pectobacterium brasiliense strain NAK:254 OBMBMGFL_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 57 29 100.0 34 ............................. CGTAACGAATAAAAACGATGCTGCAACAGAAGCT 120 29 100.0 32 ............................. CGCGCGCAGGCTGCGCGGGGCGCGGTACGGCG 181 29 100.0 32 ............................. AGGGACCAGCATAGATAGGAGGAGCGGCGTCT 242 29 89.7 0 ....A.......GG............... | ========== ====== ====== ====== ============================= ================================== ================== 4 29 97.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGAGACTGCTTCGGTTCACGCGGCAGCTGCTTACG # Right flank : CGCGCGGGTGGTCCGCCGTTGGTGGTACGGTTGGGGTGCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 166303-166992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAM010000001.1 Pectobacterium brasiliense strain NAK:254 OBMBMGFL_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 166303 28 100.0 32 ............................ TCGCTAATGCGGGGCTTATTTTTGGAGATTAT 166363 28 100.0 32 ............................ TGGTACGTTCAGTGCTAAACGGTGGTTGAGCT 166423 28 100.0 32 ............................ AGCTGCGCGGAGTGACTCCAGCCACTCAGCAT 166483 28 100.0 32 ............................ TACTTGCACAGAGTTACTGTGCGGCGGTATTC 166543 28 100.0 32 ............................ GGATGAGCTACACGATTGGGACGCTCATCAGC 166603 28 100.0 33 ............................ ACCGCCAGCTCTTACATGTTCCATCGTGATCAA 166664 28 100.0 32 ............................ ATGCTGCCAGGGCCATAGCAAAGCACGGGGGA 166724 28 100.0 32 ............................ AAGAACAGCATCGGGATCGATGTTCAATGCCT 166784 28 100.0 32 ............................ CAGTACCTGCGTTACAGCCTTGGCCTTAAACC 166844 28 100.0 33 ............................ TGACCAGTTTGCAAACATGATTGATGACCTGAT 166905 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 166965 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAACACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCTATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174627-173349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAM010000001.1 Pectobacterium brasiliense strain NAK:254 OBMBMGFL_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================= ================== 174626 28 100.0 32 ............................ AATTCCGCCAGCGAGCCAGGTGATGACATATG 174566 28 100.0 32 ............................ ACGATGCCCAGCTCTAAACAGAGCGACATCGG 174506 28 100.0 32 ............................ TGCAATGTCCACCACTCCGGCGCTATTACCCA 174446 28 100.0 32 ............................ TCATAACAAATCTTCGGGTTCTTGTAGCGATC 174386 28 100.0 81 ............................ ATTGCACGAGTGGCGCTTGAATCCGACAAAACGTTCACTGCCGGATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 174277 28 67.9 32 NNNNNNNNN................... CGATAACGCTGTTAGGACTAATATCTAACCCC 174217 28 100.0 32 ............................ AGTCAGCATCATCAGGGATAGACCATAGGCCA 174157 28 100.0 32 ............................ TGAGAATGATACAAGCCATCAACTCCGCGTAT 174097 28 100.0 32 ............................ GATAACTCCATCGGCGTTGTAATGCTATTGCC 174037 28 100.0 32 ............................ CATATACTGATTGAGTGCGGCATTAACCGGGA 173977 28 100.0 32 ............................ ACTCCAGGGTTTCAGTTACGCCGCCCGTCCAG 173917 28 100.0 32 ............................ TGCATAGCACCGTCCGCCTTTAGCGACTTCAA 173857 28 100.0 32 ............................ CGCCAGATGGAATGGCTAGACCTGCGCGCCAA 173797 28 100.0 32 ............................ AGCGGAAAATTTGCTGCCTGTTGTTGTTAATG 173737 28 100.0 32 ............................ AGCGCGCTGCATGTATTCACCCAGCACGAAAC 173677 28 100.0 32 ............................ TGTGCCACCAAAAAGCACACCCCCTGTGCCGT 173617 28 100.0 32 ............................ TGGTCGGCGTCAATATGGTACTGGAGCTGAAC 173557 28 100.0 32 ............................ TCCGCGAGCCGGATGCTTGGGCCGGTAACTGT 173497 28 100.0 33 ............................ AAACAGTGGAGCATTAGCGCCGGAAAGCTGGAT 173436 28 96.4 32 ...........C................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 173376 28 75.0 0 ...........T.C......T...TCCG | ========== ====== ====== ====== ============================ ================================================================================= ================== 21 28 97.1 35 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAAACATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCGCAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCATTATCGTCAGTGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGGAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 183611-183998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAM010000001.1 Pectobacterium brasiliense strain NAK:254 OBMBMGFL_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183611 28 100.0 32 ............................ GCCACACACGCGATATACGGTATTCTGAGCAG 183671 28 100.0 32 ............................ AGACTGTCCGGAGCGGAATCAGCGGGGTTAAA 183731 28 96.4 32 ...........C................ GACAATCTTGTCTTTCTCGTCGAACTCGGCCA 183791 28 96.4 32 .................T.......... ACGGTGTACAACGCCAGCAACGTCATGTTTTC 183851 28 100.0 32 ............................ TTGATTTCGCCGCCGCTCGGCTACCGTCGAGG 183911 28 89.3 32 ...........C.C......A....... ATAAAAAAGCCCGCAGCGATTATCAACGGGCT 183971 28 78.6 0 .............C........CG.TGC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : CTTATCGGGATGCGTCGCTGGCGCTACGCATTCTTGAGGACTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGCTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACATTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 585174-583269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAM010000008.1 Pectobacterium brasiliense strain NAK:254 OBMBMGFL_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 585173 29 100.0 32 ............................. CTGCGGGACTAATTTAACCAAATCGAGATTTG 585112 29 100.0 32 ............................. TTTATGGGCCATTCAACGCACTGTCTTTTAAT 585051 29 100.0 32 ............................. GCAGACTGCGCTTTTTTTGCCTGATTTCTGGT 584990 29 100.0 32 ............................. CCAGTCGTTACGTTTGCGCTGGCAACAGGGTT 584929 29 100.0 32 ............................. CAGTGACGGCACACATGCTCTTCCAATTCCCA 584868 29 100.0 32 ............................. CCTAACAATAAAACGGTTCTGGGACAGACTAT 584807 29 100.0 32 ............................. CAATCGCATACACCGCCGTTCGTGGTACTCAC 584746 29 100.0 32 ............................. CTGAAACTTCAGCCATCAAATCAGGAGGAGTA 584685 29 100.0 32 ............................. ACGAGTCTATGCGCGTGGCGTGCTCGCCAGAC 584624 29 100.0 32 ............................. GTGAATAATACAGGTTGGTACAATTATGACGG 584563 29 100.0 32 ............................. GGGCTAACGGATTCTTTTGGGGCTGCTCCTGT 584502 29 100.0 32 ............................. CAATCGGATTCAATGCAGAGCAGGCGGCGGTC 584441 29 100.0 33 ............................. GGGTCGTCATTATTGATGAAGCAGCATTTCACC 584379 29 100.0 32 ............................. TGAGTGCTGCTGATAAAGGTGCAGCTGCTGCC 584318 29 96.6 32 .............T............... AGCGACGACGATGTGATCGCGACTGTGGAAAC 584257 29 96.6 32 ............T................ TTGGCGGCTTGTGGCGTATCTTGATTCATCAG 584196 29 86.2 14 .......T..T..G.........G..... ATGCGAGCGCGGGC Deletion [584154] 584153 28 82.8 32 .G....AAT.-.................. TAGAACTGATCTCCGCCGTGGCCGATTTGGCT TT [584144] 584091 29 93.1 32 .A.........A................. CATATTGGAAGCCATTGGCGCTTATAACGCTG 584030 29 100.0 32 ............................. TTATTGGCGAAATCGTTCCGGGCCTTTGCTTC 583969 29 100.0 33 ............................. ATTTGCTGTACGTTGATGCTCATGTGTATTGCC 583907 29 100.0 32 ............................. TTCAAGGTCTTTTGGCGACAACCCACTGTTCA 583846 29 100.0 32 ............................. GGCGGGTGTCCGTCCAATAGCCTTCCTGCTCC 583785 29 100.0 32 ............................. ACGGCACGGTCACGTCAACGTGGCATGAATAC 583724 29 96.6 32 ............T................ AGCGTTCCCGATACGCCACCGAATACGTCATT 583663 29 93.1 32 .A.........A................. CCCGACAGCAGGAGCAACACAAAGAAACCTAT 583602 29 100.0 32 ............................. ATTCAATCGCAAAGGCGCTAACAACAGCCGGA 583541 29 96.6 32 A............................ GAATAGAGTCAATATTTTCTGCGTGCAATGTT 583480 29 100.0 32 ............................. TTTTTGACGCCGTACAGGGTATCGCCTTCTAT 583419 29 93.1 32 .A...........G............... AAACGATAAAGGTGATGTGCAAAGCGTACCCA 583358 29 100.0 32 ............................. CATGCTGGTTAAGAATGAGAAGCTTAACGGGT 583297 29 93.1 0 .A.........................T. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTACCGCCGGATGATGCACAGCCGCCTGCAATTCCAGAGCCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGTGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTTTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGAACCAAATCCCGCTGCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACGCGCATTAGCCCTGCAGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //