Array 1 1819315-1815869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028297.1 Acidovorax avenae subsp. avenae strain MOR chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1819314 32 100.0 35 ................................ CTGGGCTTCGACGAAGAGCCGAAGAAAGGCTGACC 1819247 32 100.0 34 ................................ ACGGCAATGGTGTATTCGCCGCAGGCCTTGATGC 1819181 32 100.0 36 ................................ GCCTGCAGAACGATTCCCTTCGGCCCCACGATGTTC 1819113 32 100.0 34 ................................ GGCGTGGACAGGATGTCCCGGATGGACTGGCGCA 1819047 32 100.0 35 ................................ GGGAACGGCCGCGGCACGCTCAACCCGGCCGCACA 1818980 32 100.0 35 ................................ CCCCGAGTCTCGGCCGGCTGCTCGCCCCCGCCCCA 1818913 32 100.0 36 ................................ ATGATGGTCGGCCGGGCCTGCCCCGGCTGGTGTTGA 1818845 32 100.0 36 ................................ GTGATGGGGCAAATCTGGCGCTTGCCGAACTGGAAC 1818777 32 100.0 35 ................................ CGAAGAACGTGCCCTTCGACTCGGCCTCCATGAAT 1818710 32 100.0 34 ................................ TTCTCCCCGCTGGCCTTGTCGGTCCACTTTTCCG 1818644 32 100.0 35 ................................ AGCATCACCGAGAGCACGCTGCGCGAGCTGGCGCG 1818577 32 100.0 34 ................................ ATGAACGCCCATCCGTGGGTTACGAAGAGCCGTC 1818511 32 100.0 35 ................................ ATCTCCTCCCACGGCGGCTCGCAAGTCCGCAACAA 1818444 32 100.0 34 ................................ TATGCCGCCGTTGAGCAGGCGCGGGCGTCTGTAA 1818378 32 100.0 36 ................................ ACGGCCGCGAAGGGCTATTCAGCATCGGGGCCTATC 1818310 32 100.0 35 ................................ GCTTCATGAAACGCGAGTTCGGTACGCGCATGGTG 1818243 32 100.0 35 ................................ CGGGTAGTGGCCGGCGTCATAGGCCGCCTGACACC 1818176 32 100.0 36 ................................ CTCCCGTGGGATTGCCTGGATGAGCCCCCGGACGTG 1818108 32 100.0 35 ................................ AGCCCGTCGCCGTCGTCCTGGACCAAGGCGAAGTG 1818041 32 100.0 35 ................................ TTGCACAGCATGCCGAGGGCGTCCACGACAGCGGA 1817974 32 100.0 34 ................................ GACCTCCTGAGCGGGGAACAGGTCATCGAGCTTC 1817908 32 100.0 35 ................................ ATGCCCATGAAGCCGCCGCGGCCGGCCCCGGCCTG 1817841 32 100.0 35 ................................ TGGTTCGAGACCGGCCTACGCCCCGGCGAGCTCCA 1817774 32 100.0 35 ................................ AGCAGCAATCGTTCGGGGGCAAGGTAGCGGGCCAG 1817707 32 100.0 35 ................................ CGCGCAAGTAACCGCGCAAAACCTCGCAGCGAAAC 1817640 32 100.0 35 ................................ CGCTACCTGGGCCAGGCTGTGCCCAGCATGCACAC 1817573 32 100.0 35 ................................ CAACAGGCATACCCTGGATACACATGCGACGTTAT 1817506 32 100.0 36 ................................ TCGATCTCCTCCAGGATCTCGGTGTACTCGGCCAAC 1817438 32 100.0 34 ................................ TTGCGCGACCTTGAGCGGCAGGGCGCTGATGGAT 1817372 32 100.0 35 ................................ AAGGACGGTCCGCTCGCGGAACTGGCCGAGAGCAT 1817305 32 100.0 35 ................................ TTCTACTCTTCTCAATCCCACTCAATACCAAACAC 1817238 32 100.0 35 ................................ AGTGCTCATTCCCTGGTTACCCAATTTCAGCGAGC 1817171 32 100.0 34 ................................ ACGTTCGTGATAATTCATCCATCGCAGCCCCACC 1817105 32 100.0 35 ................................ ATCCACGATCCAGAGGATCAAAAACGGCAAGGGCT 1817038 32 100.0 35 ................................ GTGTACGCCGACTACTTCCCGGCCAGCCTGCGGGC 1816971 32 100.0 35 ................................ AAGACTGTCTCCGGGGACCTGCTGGAAGAGCTGAA 1816904 32 100.0 35 ................................ GTCTTCCACGAGGGCGGCGCGCAGGCCCGGGTTCC 1816837 32 100.0 35 ................................ GTGTAGGGCGGCCCGGAACCGTTGATGCGCCAGTT 1816770 32 100.0 38 ................................ CTGCCGCAACATCAAGGCGAGCCTGCAGGGCGACGTGG 1816700 32 100.0 36 ................................ CTGCGGGGTGGACGGGTACTCCCGCCACATCTGGTC 1816632 32 100.0 35 ................................ GCGGCAGCAACCCACGGCACGCTGAGCGGGCTTTT 1816565 32 100.0 35 ................................ TTGGGAGACGCTCGCCGCGTCCGGGGTCCAATCCT 1816498 32 96.9 34 .....................C.......... AAGGTGCCCAACCCGGGCGGGGGCTTCGACATGA 1816432 32 96.9 36 ...........C.................... GGCAGCGTGATCTTGATGGCGCGGATGGCCCGGGCC 1816364 32 100.0 35 ................................ CGGATCAGCCTCAGCGAAGGCGATAATTTGTGCAG 1816297 32 100.0 34 ................................ GGCGACTACGTCGATCCGGCCACGCTCACGGACG 1816231 32 100.0 35 ................................ TGCGACACCGGCAACGAGCACGAAGCCACGTACGC 1816164 32 100.0 36 ................................ ATGCGCAACGAACTCAACCTGGGTAGCACCCTGGCA 1816096 31 93.8 33 .........A....-................. ATCAACGGCGAGATGGGCTGCGGCAAGACCACG 1816032 32 90.6 35 ............A...........A.....G. TTCTTTACGCGTGGATTAGTGGCGACTTTTGCGAC 1815965 31 84.4 34 .....A...C...G.T..........-..... TACGCCCTTACAAGGCGTAGGTCGGCAGCGCAAC 1815900 32 68.8 0 .......A...CAT.AA....C..AC...G.. | ========== ====== ====== ====== ================================ ====================================== ================== 52 32 98.7 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATTTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAGCGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGCCCCCCATTCCTCTCTTCCCTCCTTCTTTTAGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGTGCAAGTGGTTGAGAGCAAAGGGAATTTATCCTGGGTGCCGGACGGGGCGCGCACGCCGCGGGTCGATGGGGACCAAGTTCGCGGATGTGCGAGGGAAATGGCTGGGGTGGCGCGGGTTTATAAAGAGGCC # Right flank : AACGAGAGGTGTTGCGGCAAGATGTCCGCCGACGATCCGCGTCCGTGCGTGCATGAGTGCAGCCAACCGCCCGGCCGGCCCAGCCCTACGCATGCTCGCGAACTCCTACATCGCAGGCCCATTCACACCCATCCGCATCGCCACCCGCCGCTCCACCGCCAACCCATGCGCAGCCTCCACATCCATCACCCCCTGCAGCCGCGGCCCCGGCGGTGACACCGGGCGGAACCCCAGCCTCGCATAGGCCGGCGCGCTCCACGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGCCTCGTGCCGATGCCCCTGCGCTGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCCGGGCCCTGCCTCGGCCACCCAGGCCGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4495413-4497187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028297.1 Acidovorax avenae subsp. avenae strain MOR chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4495413 32 75.0 35 A.TC.ATAG...A................... GTGCACGTGCACGATGCGCGCCGGGCGGACAGCGC 4495480 32 100.0 33 ................................ AGAGCGGAATGAACTTCCTCTCCGGCTCGGGTG 4495545 32 100.0 33 ................................ GATGGGCAACCGGCTTTTTCTCTACCGCCTGCC 4495610 32 100.0 34 ................................ ACCTACAACTGCGCGGGCACGCGAAGTCCATCCG 4495676 32 100.0 37 ................................ ACGCGGTTCGCGGGGTGCAGCAGGTGGCGCGCGCCCA 4495745 32 100.0 35 ................................ ACCAGCGAGGACATTCCGGCCAGCACCGGCAGCGC 4495812 32 100.0 35 ................................ GATGCGGTGGCGGCGGCCGCGGACGACACGTCCAA 4495879 32 100.0 34 ................................ AAGTTTTTCACCGGCCTACGCACCTCCGAGAGCC 4495945 32 100.0 34 ................................ AAGTTTTTCACCGGCCTACGCACCTCCGAGAGCC 4496011 32 100.0 34 ................................ ATGCTGGCTGGCGCCCCTATCTGGGGAATCGTGG 4496077 32 100.0 37 ................................ GTTCCTTCATCCGGGTTGTTCGCCAGAACATCGTGGG 4496146 32 100.0 34 ................................ ACCAGCTTTTCGGCCCGCGTGCCCCACAGGGCGG 4496212 32 100.0 35 ................................ ATCGGCCTCGTGGGAGCAGCACGATGAAGCGCCGG 4496279 32 100.0 36 ................................ GACGCCGTGTACCTCATGGCCCTGAACCCGAAGGCC 4496347 32 100.0 34 ................................ CCGGTCACGGCGATCGGGTCCACCTCCCAAACGC 4496413 32 100.0 37 ................................ GCCAGCAACCGGATCGTCGGCGGCGGACTGCGGGGCA 4496482 32 100.0 35 ................................ ACGAAGGCGCGCCGGGCCGGGTCGCTGACCTACGT 4496549 32 100.0 33 ................................ ACTCCCACCAGAAGATCGTGGCTTGTCCGGCCG 4496614 32 100.0 35 ................................ AAGTTCCGCGCATCCAGCCTGGGCTGGATCATGAC 4496681 32 100.0 36 ................................ TGCAGCCACACCCGCGCCGGCCGAAGACAGCCGGCC 4496749 32 100.0 37 ................................ AAGGGCATCGCATCCACACCGAGCACCGACCGGATGG 4496818 32 100.0 35 ................................ ATCCCGTCGTTGAGCTTGAGAACGGCCGCCAGCGG 4496885 32 100.0 36 ................................ TGCCACTACGGCCGTCGGCGCATGCCGCGCGCGAGC 4496953 32 100.0 37 ................................ TATGACGGCGACGGGCGGCCCGTCGAAGCCCCGGCCA 4497022 32 100.0 35 ................................ TGCGAGACCTGCGCCTGCATCCGCATGGCGGTGTG 4497089 32 100.0 35 ................................ TTCATGCACTCCAACTGGTGGGCTGTATCCCGATA 4497156 32 93.8 0 ....................C...A....... | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 98.8 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GCAGACCATGCCGCTCAAGCTGCTCAAGCCCTGCGTCGCCACCATCGACGAACTGGCGCGCAACTACCGCACCAGCGTCGTGCTCTGCACCGCGACGCAGCCCGTGCTGGAGGCGCCCGCGTTCGACGGCGGGCTGACGGGCGTGCGCGAACTGGCGCCCGAGCCCACGCGGCTGTTCCAGCAACTGGAGCGGGTGCGCGTGCGCCACGTGGGCACGCTGGACGACGCGGCCCTGGCCGGCCACATGCGGGCGCGCGAACAGGTGCTGTGCATCGTCAACAACCGCCGCCACGCGCGGGCCGTGTACGAGGCCATGGCCGACCTGCCCGGCGCGCGGCACCTGACCACGCTGATGTGCGCCAGGCACCGCAGCGAGGTGCTGAACGAAGTGCGGCAGATGCTGAAGGACGGGGAGCCCTGCCGCGTCGTCAGCACCAGCCTGATCGAGGCCGGCGTCGATGTGGACTTCCCCACGGTACTGCGCGCCGAGGCGGGCCTGG # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACTCCCCGCCTATCGCCCCAGTCCGACATCCCCCCACCCCTCCTCCCCGGACACTGCCTCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGACTCCGCCACCCCCCTCACCGCCGAACGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCAGGGGCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //