Array 1 361437-363050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTIC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H100 isolate H100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 361437 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 361498 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 361559 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 361620 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 361681 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 361742 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 361803 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 361864 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 361925 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 361986 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 362047 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362108 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362169 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362230 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362291 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362352 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362413 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362474 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362535 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362596 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362657 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362718 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362779 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362840 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 362901 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 362962 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363023 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379183-379822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTIC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H100 isolate H100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 379183 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379244 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 379305 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 379366 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 379427 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 379488 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 379549 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 379610 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 379671 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 379732 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 379793 29 96.6 0 A............................ | A [379819] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //