Array 1 2719267-2718977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062165.1 Paenibacillus sp. JNUCC-31 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2719266 33 97.0 33 ........T........................ AATTGTGGAATACAAACCTAGAGGTTACTCGCA 2719200 33 97.0 36 .........T....................... AGCTCGATCTATTTTGGATAATTTGTACTTGCTAGG 2719131 33 100.0 35 ................................. TTAACTGTGTTAGAGTATTGTTGCAAATCTTGTTG 2719063 33 90.9 21 ...A..............CA............. CATCCAGGCGGAAGTGGGTCG 2719009 33 69.7 0 .CT................A.AACTTA.C.... | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 90.9 32 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : ATTCCTACAGCGGAAAGTATTCAGGAAGTGAAAGCACTGAATCCGGATGGTGTCCTGATCGGCAGTGGTGGACTATATAACGGAGTGGATGCGGCCAAAGCGCTCGCGCTAGGTGCAGACCTGGCGGGGTTTGGCCGATCGTTGCTGGAGTCTGCGGTCGCTTCCGACGAGGCACTGGATCAGCGGCTGGAGCAAGTCGAGTTCGAACTGCGTACCGTCATGTTCGGCATCGGCGCCGGACGAATCGAAGAGTTGCAAGGGACGCCACGTTTGGTCGAGCGGCGGCGTTAGATAGGGGACCGAAATGGAGGTGCGAATCCCAAGCTCACACGATTTCCCTGAAGGATTCGCACCCGAAAACAACTTTTTTGTGACCTTTTGGCAACACTGATGTTCGATTTAGGCTGTTTTATATCATAAATGTAGATAAGATTTGTTATAATTATGGGAAACACGTAGTAATGTCTAAATTTTGCGACTTTATTACGTGTGTTTCCGCT # Right flank : CCTTAAAGCGCCTTATCTATTTCGTGCTTGTTTTAACATAATCAGAAGTCAGTAGTAAGCCAAACAAACCGTCCAAAGTAAACATGGACGGTTTGTTTGTGTTTCTCTTTGAAAGTGAGAAGGTGAAGGCTCCATTGACAATGCTCAGCCCAGTTTGTTTTATTACACCTTATCATCGTCCGGTATGTACTCTAACACATCTATAAGAGTATAGTCGTTTCCTGTCATTGCCCGTAGAGTGTTCACGATGTTATTTAAGGTATCTAAATCAAGCCTTTTCGTTTTTCCTTCACACAAATCATATATAAGGTTTGGTCTTACTTTTGCTTCCCTAGCCAGTGCATTTTTAGTGACGCTGGCTGCATCTAAAGTGTCGCCCAAGTATGGATGCGTTGACATTTCTCACGGATGTCTTATTGTGGACTCCCGACCGTGTGGATATAGATCTGATGCTTGATCGTATTCTATGACAAAGGCTTTTTAGCCCTCTTCCAGGCTAT # Questionable array : NO Score: 6.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:-0.22, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 4720637-4722636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062165.1 Paenibacillus sp. JNUCC-31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4720637 33 100.0 35 ................................. CAACCAGGAATGAAGCCTCCTGCACAGTGGTTCAA 4720705 33 100.0 35 ................................. TGGAAACATATTTGAAGCATGGAAAGCTGTATCTG 4720773 33 100.0 34 ................................. TGAAGCTTATGCTTGGGAGATGCTTGACGAGACA 4720840 33 100.0 37 ................................. AATCAATCTTGCGCGATTATTATCATTGTCTAATAAT 4720910 33 100.0 35 ................................. ATCGGAACTGGAAAGAAGAAAGCCCAAGCTGCTAT 4720978 33 100.0 34 ................................. CTGTCTGTTACCAATGTTCTGCTGCGCTGTATTG 4721045 33 100.0 33 ................................. ATCCAGTGGGGAGTAGTTGGCAGTAATATTTAA 4721111 33 100.0 35 ................................. CATAAGGGCCTGTAGTAAATCATCAACCTCTTGGT 4721179 33 100.0 35 ................................. CATAACAACACACACTCCTATTTTTTAGATGATGA 4721247 33 100.0 35 ................................. GGTAACTGATAACATAATGTAACAACTCCTATTTT 4721315 33 100.0 34 ................................. GTTCAACTTTTCGGCCGCTTCGTAGTTCTCTTTT 4721382 33 100.0 36 ................................. ACTTAGACTTATGGTCCTGGCTATGAAGTTAATGCA 4721451 33 100.0 36 ................................. AGGAGTTGATGTCCGGCCGTAAGGAACCAATCTCGC 4721520 33 100.0 35 ................................. TTCAACTCAGCTAGGCTTACCTGATCCTCGTTCCA 4721588 33 100.0 35 ................................. CTTTTAGGCGAAGCGGATAATAGTCGCTGGTACAG 4721656 33 100.0 35 ................................. ATAGCTTGACCGATACACTTTCGCGGATTAAAATG 4721724 33 100.0 34 ................................. TATACGGACTACGCGCTTAAGACTCGCGATAAGA 4721791 33 100.0 35 ................................. AGCTAGCATTCTTGCCTGCCCTACAACCACTGTTG 4721859 33 100.0 34 ................................. TTTCACCCTCGCTCCCGATGTTTGTTGTTGCAGA 4721926 33 100.0 34 ................................. TTTAACGTCGATTACCGCAAGGCCGGGAGATAGC 4721993 33 100.0 36 ................................. ATCACTACCATACAAACGCGCCTCCTAGTTAGTCGG 4722062 33 100.0 35 ................................. GTTTGGATTAAGAACATTCACCAGCGCAATCGGGC 4722130 33 100.0 35 ................................. TCTATATTTGCCCTCACTGATCGGCGGATCAAATT 4722198 33 100.0 35 ................................. ATTGTTACCAAAGGGGTATTTGCGTATTGATTTCT 4722266 33 100.0 35 ................................. AACATTGGATGGAAAGCAGACAGAAGAAACATCCA 4722334 33 100.0 35 ................................. CTAAATGGGGGTTGCATCATTTTCCCAATCGTGTT 4722402 33 100.0 34 ................................. AGGAAGCGAGAGAGAATTATAAAATCTGGCTAGA 4722469 33 97.0 34 ...................A............. TGTCCAAGCGGATGAAAGTTCCGTCTTCGTTAAT 4722536 33 93.9 35 ...................AA............ CAAGGAACACCGCCAAATTCAGCAGTGACAATGGT 4722604 33 97.0 0 ........................A........ | ========== ====== ====== ====== ================================= ===================================== ================== 30 33 99.6 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GTTCCCTTGCCTACATTGGCAAGTTTTGCAACCTGCTCCATGGTTGTTGCTTTGTAACCAAACAACGCGAACGATTTTTCAGCCGAGTCAATGACTTGCTGCCTTCGATCGATTGTTCTCATGGCATATCCACCTCCTAGTCGTATGGAATGTTAAAGGTAAACCCGGAATTGACTGAATTACTTAATTGGTCAATTGGTCGTTTATAACTGTAGCACTCGAACGGGCAGAGTGGATGTGATCTTTGTCATAATGTACATGGGGGGAGTGAGGAGGTTATTCAGTGGAATCAGGATGTGACTTAGGCAGGTGCGAATGTGAAGCTCACATGAAAACCCTGGGGGATTCGCACCTCAGATTTTGTCGAAAAGGGGGCAATTATTGCCTTTTGGCATAACGTAGACAGGAATAGATTGAATTATGATATGGAAAGCCATAGAATAATAGTGAAAAAACGTGTTTTTGATGGATCGGATCGTTAAGATACGTGTTTTTTCGCT # Right flank : TTGGTTACGATCAAAGTGGACACCCATCCATTGGAGCTACAATCCGAATGGAATGCGTAGATAAGGAGGAAGATAAATAAAAAAAGGAAATTAAAATGCTGGAACGTGTTACCGTTCTTATATACAGCGCTGTAGGTTTAGAATTCCAATTATATTCCTTAAAAAAATTTGTGGGTTCAAAAATAGATGCGCCATCTATAGAGTGCGAAGTGAATAGATGCGAGCTTGTCTTTTTCGATTACTGAACGTTCGATTGTGGGGATGATATTAGAGGAGATTGAACCTTAATAGGCTCTTTTATTCAAAAGTTGATGATATATGTGCTAAATCAGGATAATATGATTACCTTTTTTCAAAAAGTAATTATCGGAACTTGTGTTGCATGAACATCAAATTTTCTTGTTGGAAAGGAGTATCGGTTGGTAGTTGTCGTAAATTAATGTGAAATGCAGACAAGTTTACCTATATAAAGTAAATCCGCTGTTTCAAATCCACTTAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 4735527-4737521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062165.1 Paenibacillus sp. JNUCC-31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4735527 33 100.0 35 ................................. AGCATTTGTAAACTTTGGATATGCATCAATCGCAT 4735595 33 100.0 35 ................................. CAACAGCTGCCGTAGAAGTAGACTTTTCCGGAGCA 4735663 33 100.0 35 ................................. CGTTATCGTCAATCCCAACCCAGATGTCACGGCAG 4735731 33 100.0 36 ................................. TCATGGGAACAGGGAGAGGGTAGGGAGTCTATACCC 4735800 33 100.0 36 ................................. GAATACACAACGCGTGAACAACCCGATCCTATAGGC 4735869 33 100.0 31 ................................. AGTGCGGCTCTTAACGTAACTGTAAGCGTTG 4735933 33 100.0 35 ................................. AATGGTTGTATTAAAACCATATTGGGGTTCACGAC 4736001 33 100.0 35 ................................. CATCGTTGATGATGGTACACGCGAAACAAAGAACA 4736069 33 100.0 35 ................................. TCTGACTTCAATGTGGCGACTCAGTGGATAGCGAT 4736137 33 100.0 35 ................................. TCGATGAGACTTACGCTAATCTTACCGACGCCGCG 4736205 33 97.0 34 ..............A.................. GAAGAATAAAGGCTGGAATAGGGTGTATGTGTTA 4736272 33 100.0 34 ................................. GTAGGAGAGGAAATAACGCAGATTATGAAGAATT 4736339 33 100.0 32 ................................. CATTATGAGTGCCATTGGATAGGGAGATAGGG 4736404 33 100.0 34 ................................. TTGTCAGTGAAGAAAACTTTTGGTGGTAAATATC 4736471 33 100.0 34 ................................. TCAATTACAATACCGAATAACAACCGCTTCGGCC 4736538 33 100.0 35 ................................. TATAGCAGACAGCTTGCCGAAAGGGACTCCTGGAG 4736606 33 100.0 36 ................................. AGAAGATAGCGGCGCGCGTGCCCGGGCATTTCTGGT 4736675 33 100.0 33 ................................. CATTTCAGCAAACCGGGATACGTAAGTTGCTGT 4736741 33 100.0 34 ................................. TATCTTGCTAATCTAGCAGAGACGGATGAAGAGA 4736808 33 100.0 34 ................................. CGGACGGACACAGAAAGCACAGGAGGTGGATATC 4736875 33 100.0 37 ................................. AAGAACCAACCGCTTAATAGCGAACCCGATAGACATC 4736945 33 100.0 37 ................................. AAGAACCAACCGCTTAATAGCGAACCCGATAGACATC 4737015 33 100.0 35 ................................. TTTTTGAAGCGCTACTTGTTGTTCATTCACATAGC 4737083 33 100.0 35 ................................. AATCATCGTCTTCCGTATCGATTCAAACTGGATCA 4737151 33 100.0 35 ................................. TAATCATCCCGGCTGTGGCGGCTTTTGCGGCCATG 4737219 33 100.0 35 ................................. CAGTCACGCTCCTGGCGGATATCCTATTGATTTGC 4737287 33 100.0 35 ................................. TTCCCGGTGCCGATAAAGGAACGGGCCGGAATATT 4737355 33 97.0 33 ....................T............ CTTTTAAATGGGGTGATTTGAGGTGGCAGGAGG 4737421 33 100.0 35 ................................. TTGCTTTGGGTAACGTTGGGGTAACACTAGGGTAA 4737489 33 97.0 0 .........C....................... | ========== ====== ====== ====== ================================= ===================================== ================== 30 33 99.7 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : GAAGTAGGTGTGATGATTGCTTATTTTGATTACGTATGATGTGAGCACAATAGGTAGTGAAGGTCGAAGAAGGCTATCTAAAGTGGCTAAAAAGTGTGTGGATCACGGTCAGCGAGTGCAGAACTCGGTGTTTGAATGTATACTGGATGCTGCCCAGTTTAGACGTTTAAAATTTGAACTGGAAGAGTTAATTGATAAGGAGACCGATAGTCTTCGATTCTATAACTTAGGCGATAATTACAAAAGTAAAGTTCAACATGTGGGAGCCAAGGATTCCTATGATATGGGTGATCCGTTAATACTTTAACAGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGGGATTCGCACCTCGAAACTTGTCGAAAAGGCCTTTTTCGTGACCTTTTGGCAATGAATTTAGGCAAAGTTGACTGAGTAAAGGTTCTTAATAAGCCGAAATAACGAAAAGACGTTAATATCTATTCGAGAAATATTGCTATTACGTGCTTTTTCGCT # Right flank : TTGGTTTGCGTTTATGAACGATCAGCAAAATACTTATGGAAAGCGAAACGTATTCTTTCAAAGTAACCAGATACAAATAAGCCGGAGGCGCATGTTGGGCCGCACTCCGGCTTGTTTGTATTTGTAGAGATTCATCCTGCTTGGAAGTAAGCTAAATTTGGTCTTGCAATCATCCATCATTAAAGATATATTATTAATTAATTAACTGATCACTTAATTAAAGTTTAACTTAAAGAGAGGGGAATACCTTTGGCAAGACCCATCAATGAAGAAAAAAGGCTGGAGCGTCGTAAACGGATTCTAAAAGAAGCTGTTGTTCTGTTCGCAGAAAGTGGATATTCCAATACCACAACGGCGATCATTGCGAAAAGTGCGGGAGTGACTTCTGGAACCATTTTTCAATATTTCCCTAGCAAAGAAGCTTTATTCTATGCCGCTGTTCTTGAGCCGCTTGCTGATATACAGATGAGATCACTTGCTTGTCTACAACAAGAGGGAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //