Array 1 121940-121551 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRE01000059.1 Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121939 28 100.0 32 ............................ CATGCGTTCCTGTTTACCGTCGTTTCTTTCAT 121879 28 100.0 33 ............................ AATATTGCGCAGGCGATGCAGCTGCTGATTGAT 121818 28 100.0 32 ............................ ACCTGGAAGGGGCCGCCACCCAAGTTCGAGCG 121758 28 100.0 32 ............................ TACGCCCTGCTTGAGCGGGCCGAAATGGAACT 121698 28 100.0 32 ............................ TTCCTGGGCGTGTCGCGCTTGTGGGATTGATC 121638 28 100.0 32 ............................ AGGATGGATTGCATGCATTCTCTAATGCAACT 121578 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGGCGCGTTTGCGTTGCTGGTTCATCACTACGTGCCTGAAAACCGGGCGCTGCGGCAGTGGCTGACGCATGAAGTGCTGACGGTATTGCACGCGCCACAAAATGCCACCTTGGACAACCCGAAGATCTGCCACCTGCAATGGCCAGGCACGTCATTGAGCGTGATGCAGTGGCGCGATGAGTCGTGGATTAGATTGCTGGACATGCCGCAGGTGGCACTGGAAGTTCCGCTGCCACCCCGACGGGGCGTGTTACGCAAGGTGCTGGATGCCTTCGCAACCTGACCCGACATTGCCTGCACGTGCTGAAGTGGCCTGATCTCAGGCAAGATCCGGGACAGGCTTGGGATCAATCACCGTAGGTATTGTTGACCCTCTTTTTTCAGGTGTTATCGATGGCTTTTGAAATCAATGACTTATGAAAGCCCTGAAAAAAAGGGTAAAACAGCCTCCCGAGGATGATTTCTCTTTAAAAACGCTGAGTTATTGAGCAAAGTGTCTA # Right flank : CCCCGTACCCACCCACTGACGATACTCAGTCACTAAGCCCGCTCCGGTCAGCCCTCGCTGCAAACACCCCCACTCTCGACTACCCTCAATCCCATCATTTAAGCGGTTGATGCTCCAGCCACCTTGACTGATAGGGACAAGAATAATAATGAAAGACCCTTATGCCTTCGGGTTCTACAGTGCCTGTCTTGCGTTGATGGTCATTGTTGCGGCGACTTTCTACAGTGCGCTTTCCGGCGGTCATCCTGGTCGGGCGGTGGATGCTTATTTTGTCTTGTATTCGGCCTCTTCGCTGATCGAAGCCCTGGCGGTGATCGGGATCGCGGGTGTGGCGTTCAGGGCTTATGGGTCCTGGAAGCGTGATGTGCGCCAGCACAAGGCGCTCAGTGTGATCTGGGATGCCAGTGTCGCGTTTCGGGAGGTCGAGATTGGTTTCAACGAATGGTTTTTCGGCCCGAATGCCGAGCAGAAGAGCAGCGGCGATACACGCCAGATCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10966-10277 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRE01000062.1 Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10965 28 100.0 33 ............................ ATGATTGTTTCGTCGCCTTCAACACGCCGAACA 10904 28 100.0 32 ............................ ATTCACATCTTCGCAAAGTTGAGCATCGCACT 10844 28 100.0 32 ............................ TGAAGAAAAGCAGAAGGACTGGCCAGACCATT 10784 28 100.0 32 ............................ TCCGACACTCCATGCCGCTGTTGCATATGGCG 10724 28 100.0 32 ............................ AAACTCGAAAGTCAGAATGAATGCGCCGTGGG 10664 28 100.0 32 ............................ CAGGGAGTTGGAGACTTCCCCGATCACCTCGA 10604 28 100.0 32 ............................ GACGTGGCCAGCTCGACCAGGTGCGCGAAAGT 10544 28 100.0 32 ............................ AGCATCCTCAATTTGCTGAACAACCAGCGCGC 10484 28 100.0 32 ............................ AGCAGCATCTGCAGCATCGGCGCTGGTAGCTA 10424 28 100.0 32 ............................ ACGCGAAAACTGACGACATTGGAATGTCTGGT 10364 28 100.0 32 ............................ GGTGAGTAGCTCAAGGATCGGCGCAGGGTCTG 10304 28 89.3 0 ...........CA.........C..... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TATTGGAGGCAGGTAGGGTGTACACTTCACCGTACAACGTGGAAGTGTACACATGCAAAAAACCATATTAATTATACAGTTATGCTATTATTCGAGTCTCCCTCGGGCACCATATAGCAAGACATTCAAGCGGTTGCAGAGCTTGAATGAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCCGGAATTTCATCACCCACAGATAGGCACCCGATGCCTAACTGTACAGGACCTGTGGAAGGCAGCTTGCTGGCGACAGGGCCAGTGAAATCGGCACATATGCAGCGTCTGCTCGTCAGTCATCGCCAGCAAGCTGCCTCCCACAGAGTGAACTGCGCCTGACTGATCGGCATTACCCTTTCTTGACCCTCTTTTTGAGGCCTCCATCCAGGCCCTTATAAATCAATGAGTTATGGATGGACTGAGAAAAAGGGTAAAAGAGGGTTTTGCGCAGGGTTTTTCTTTAAAAACTGTGGGTTATGGGGCAAGGTGTCTA # Right flank : ACCATCATCCATTGCAATCCCCCACTACCCTCCCCTATATTCCCCCTCGGCGTCATCCACGCCCCCATCCGCGGAAAGGGCTGCGCCCAGGATCTTGCCTCACGCATTCGTCATTACGACTCCCGACCTTCAAGCGGACAAGGTTTGTGCAAGGAGATCGTATGTCTACTCGTCCCGTGTCGTTATCCCACAACGGTCGTATCAACCTTGAGCAGCAGCGCAAGCGTGCCAAGGAGCTTTTACAGCGTATGAAAAACGGCGCTGCGCCTGATGAGCTTTCGCTGATTTCACGTAGTACTTCCTCCGCTCCTGCGACCTTGTCCGATGCTCAATGGCTGATCGCCAGAGAGTTGGGCTTCAGCAGTTGGCCGAAGCTGAAGGCGCATGTGGATGCGGTGGAGTTTGCGGCGCGGCATCCGGATTTCGAGGCCAGTGATGAGGAGCGCACGGTGCATTGGCGGTGTGGCAATGACATTGCGCACAGTCTGCAACTGGCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7671-7998 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRE01000076.1 Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7671 28 100.0 32 ............................ TTCCCTTTCAACTCAGCCTGCTGCAGCGGGCA 7731 28 100.0 32 ............................ TTTGCGTCCGGTAATCATAATTTCCTCAAAAC 7791 28 100.0 32 ............................ AACAGCCAGGACGACGCACGTACTAACATTGC 7851 28 100.0 32 ............................ AAACGGCAGCGGCAAACGGGCACCAAAGTGAA 7911 28 96.4 32 .................T.......... CAAAGGGCCTCTATGCGGCGCTAGACTCTTTC 7971 28 78.6 0 .....................CC.ACCT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCAGATAACTGTCGTGCCAGTGCGGATCGTAGACATGGGCATTTCCCTGGAAATGCGCGTGCAACGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGTGTCATGGTGATTCTGGAAGGGCCAATAGGATGAGGAATGACTGTTATCGCGCAGGGCACACCGGAAGTCTAGAAGGTTTGTGCGTTGGCTTCGCGGAGTATGTGGCGCGGACTCATCCGTGAAAACAGCCCCGTACTTATTGTTATTCACCCTGTGGAAAGCGGCTTGCCCGCGACGAGGCAAACATTATTTACCGCTGTGATGCGGAGATTCGATTGCCTTGTTCGCGGGTCTTCGAGAAGGCGTATTCGGACCCTCTTTTTTCTGGGTGATCGGGCGGCCTTTAAAATCAATCACTTACAGAATCGGTGAAAAAAAGGGTAAAAATGCCTTTCGGGCATGATTTATCTTTGAAAACGGAAGGTTATGGAGGAAGGTGTCTA # Right flank : TTATTCACATAAATACGCAGTTATCAAAGCCCTTCTCCGTATCACACAACCTGGACGATTCGCCAGGTTTAGCTTCTTGATATCCTTCACCCGCAATTCGCCATGCCAAACAGGAATGCAGCGTGAACAAGGACTATCTGGCGTTTTTCACTTCTTTGTTTCTGTCACGACTGGCTGATCAGATTCTGCTGTTCATCGTACCGCTGGTGGTCTTTCAGACAACCCAGAGCGCGTCCTGGGCAGGGCTGGCGTTTTTTGCCGAGTCGCTGCCGCGCTTTCTGGCGTTCCCGATCTGCGGGGCGTTGTGCGACAGGTTTTCTCCTGTTCGGATTCTGCATTTCAGCCAGATTTACCGGGCGCTGATCTGCCTTCTTGCAATAGCCCTTTACGGTATTTTCGGCGGAATCGGCTGGCTGGTGGCACTCTCGGCGTTGTGCGGCGTGCTGACGACACAAGGCATCATGGCCCGCGAGGTGCTGATGCCGCACATCTTCGCGCAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9604-9992 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRE01000076.1 Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9604 28 100.0 32 ............................ TTTCTCCCATATCCATTTCGTACCGCCTTGCG 9664 28 100.0 32 ............................ AGGCGAGCCAGTCTACGAAGTTGACATACACA 9724 28 100.0 32 ............................ TGCCGGACCTGCACAACTATGGCGGGGAAAGC 9784 28 100.0 33 ............................ CAGATGGGGCTGCCTTGGCGAGCGAGCCCAGTA 9845 28 100.0 32 ............................ TTAACGCCGTAGTCGCCGAATTCGTGACGGCC 9905 28 100.0 32 ............................ TACGACCCGGTCATTAAAGGTCATCTGCTCCA 9965 28 82.1 0 ...........AAC..........C..T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GTCATTCCTCCTCAGGATTTCGGCAAGACCGTGGGCGTGATAACCCTGCTCAATAACCTGTCGCAACCTTTGGCAGGATTACTCGTGTCCCTGCTGGCGGCACCGATCGGCACGCAGCATGTGATTCTGCTGCTGGCGGCATTGAGTACGGTATTGGGCGCAGTTGCGGCGTGGCTGTTCAGAAGCGAACGTGGAGCGCTTTCACCGACGATAGATAACCCCCTGTAGGAGCGGATTCATCCGCGAAGACAATATTCAAGGCGCCGCATCATGGGTGGATGTACCAGCCTCTTCGCGAATGAATTCGCTCCTACTGCAGGGGTGGCCAACGATTGCTTCATTCATATATCGTCATGAGCGCTGGTTCTGACCCTCTTTTTTCGGGGATGTCGAGTGCCTTTTAAAATCAACTACTTACAGAGGCAGTTAAAAAAAGGGTGAAAATGCCTTCCGGGCATGATTTTTCTTTGAAAACGGAAAGTTATGGAGGAAGGTGTCTA # Right flank : TCTCCGCACAAACCCTAACAATCTGATTTAAATAAACCTCCCCCCGGAGCGCGCTTGCTCTGAGCGACACTCCGACGACCCATTGCGAAACGCTCGCAAAAATATACGACTGCTACGCAGCCGATCGCGGGCAAGCACGCTCCCACAGATTGAACGACAGCACGGCGCCGCGGCGGCGGGCAAACTCCTACTCGCGTTTTTCTGCAATCTCATTCCTACGCGAATAGCGGAATGATCCTTCTGCCATTCAGTTACCCCCAACCTCAAAAAACATAAAGCACAGCATTACGCTATCGGCTATATATGTTCCCCTTCATATGGCACAACGCCTCTAATGGTTCGATCATGGATGACATCAGCTCTTCGGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGTGTCCTGGTAAATGGCGGGCGGGTCGAGTATGTGACGGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 18979-19548 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBRE01000076.1 Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18979 28 100.0 32 ............................ AATAGTGGGTGTATCTTCGTCAGTAATGACAA 19039 28 100.0 32 ............................ TCAGTATCACAGCGCCGTTTCGCAACTGAAGC 19099 28 100.0 32 ............................ TTTCGATGCTCGGATTTAGCGCCGACGTATTC 19159 28 100.0 32 ............................ ATTTAGCCGCGTCTTCACGATCACCATTGGGC 19219 28 100.0 33 ............................ TACAGATTCGATTTCCAGCGGATAGGTTTTCAT 19280 28 100.0 32 ............................ TGGATGTCCTTGGCCAAGAATGCCGAAAATGC 19340 28 100.0 33 ............................ AGACAGCGCCCGCTGGCCTGACCAAGGCATCGA 19401 28 100.0 32 ............................ AGATCGTCCCCGACGATGGGAGGGCCATTAGC 19461 28 100.0 32 ............................ ATAAACGCTTCAGGACAATTAGTAGCAGGGTC 19521 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GCCTGATCAAACGCCACGGCCTTACCGAGGAACAGGCACGCGAGCGCATCCCGGATACCGCCGCCAAGCGCTGCAACCTGCCTTTTACCCAACTGCGCAGCCACAGCACGGGGCAGACATTTCGCCTGTTTATCCAGCATGGCCCGCTACAGGCAAACGCCCAGCCTGGAACCTTCAATAGCTACGGGTTGAGCGGCACTGCCACTGTTCCCTGGTTCTAGCTTCAGATATGGGGCGAATTCATTCGCGAAGAAAGCATTCCCGACGCTGGATTTGTGTGGAACGGGATGGCCTCTCGCGAATGAATTCGCTCCCACGCGTGGGAGGCGAACGAGGGTTTCAGACTATGGCCTCACGAAGGCTGTTTCTGACCCTCTTTTTCAGGTCGCTCTGGAGGCCTTTAAAATCAAGCACTTATAAAGGTGACTGAAAAAAGGGTAAAAGCGGCTGAAGCGCATGATTCTTCTTTTAAAACGAGGGGTTATGGAGGAGGACTTCTA # Right flank : AGCTCGGAAACCAGCGCCTTGAGATGCGGGAAGTTCACTGCCGTGAGCTGGTCTAATGACCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //