Array 1 201415-203517 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVLU01000079.1 Escherichia coli strain cattle11 cattle11_contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201415 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201476 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201537 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201598 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201659 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201720 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201781 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201842 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201903 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201964 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 202025 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 202086 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 202147 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 202208 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 202269 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 202330 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 202391 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 202452 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 202513 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 202574 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 202635 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 202696 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202757 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202818 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202879 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202940 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 203001 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 203062 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 203123 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 203184 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 203245 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 203306 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 203367 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 203428 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 203489 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 219019-219719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVLU01000079.1 Escherichia coli strain cattle11 cattle11_contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219019 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 219080 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 219141 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 219202 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 219263 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 219324 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 219385 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 219446 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 219507 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 219569 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219630 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219691 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //