Array 1 1469659-1471149 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1469659 30 100.0 37 .............................. TGACTTTTAACTTCTCCTTATCACTCAGCCTCACAGG 1469726 30 100.0 35 .............................. TTTGCTTTATCCTCTACTAATTTACGGCGTGCTTC 1469791 30 100.0 37 .............................. ATATAACTTGTAAAAAATGTGAAAATTCTCTTACATA 1469858 30 100.0 37 .............................. TTAATTGTAACTCTTCTAATAGTTTCTCCTTCTCTTG 1469925 30 100.0 37 .............................. TAGAAACACATACTAAATTAATGATAAATAGATTAAA 1469992 30 100.0 37 .............................. TAAGCTTGATTTTCTGAAACTTTTTCTTCTACAAATA 1470059 30 100.0 37 .............................. GGATACGAACAACAAGTATTAAATATATCTAAATCAA 1470126 30 100.0 36 .............................. CCCCATATACCCTACATATATCATCTACTGTTCTTA 1470192 30 100.0 36 .............................. TTTTTCTGGATTTAAAAGAAGTACTCCAGCACTTTG 1470258 30 100.0 36 .............................. TACTTATTGTAGGTGCTTTTTCTTATTATCTAAGAA 1470324 30 100.0 37 .............................. CATTCCCATGCTCCCCCTTTTTTTTATTTGATCAAAA 1470391 30 100.0 36 .............................. TTTATTAGTACTTAGTAGTGTCTGATTATCCGTTTT 1470457 30 100.0 37 .............................. TGCATTACAAGTTCTTTTATGTTATTATAAATTTAAC 1470524 30 100.0 37 .............................. GTCCATTTTCTAATATTTTATATTCCTTTGTAAAACG 1470591 30 100.0 37 .............................. TCATCAAACAGTTTATAAATTGCATCATAAACTTTAA 1470658 30 100.0 37 .............................. TAAAGGCAGGTGAAAAAAATGATACCACTAGATGAAA 1470725 30 96.7 36 ............................G. AGTTGCAAAGATAGCTTCAAAAGAAGATATAAAGAT 1470791 30 100.0 36 .............................. GATTCAAAAGACTATGGCTGAATCATTTAAAGCTGA 1470857 30 100.0 36 .............................. GTTATAGGAAGAATTCTTTCTTCCAATAAAGTACCA 1470923 30 100.0 35 .............................. GTTGAGAAACGATATAAAAAATCAATAGTAGCCAA 1470988 30 100.0 36 .............................. TGAAATATTCCTGTATCGGGTTCATATGGTGCATCA 1471054 30 100.0 36 .............................. CATCTATAAGAGTAGAAAGTTCCCTAACTGGGATAA 1471120 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.9 36 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : ATGAACAAGTAACAATGAATAATGAATAATTATGGAGGATTTTCTTCCTTTGGTCAGAAAATCTTACATTTTATTGAAAAGCCAACGTTGGATAAAGTTCTACCCAATGTTGGTTTTATAATTATATAGATTAAAAATGTGTAGTTACTAATGATTTTATCATGGATAATATTCCATCCATATTATGTTATAAAATAAACTTTTCTTCATATCTATTTCTTCTTTATTTAAATAACCTCGGTTAAATTATACATAATAAACATAAGATATACAAAACATTGTAAAAAGGTTTTAATAACATTTGAAATAGTAATATTACTAAAATACTCATAAACTTCATAGAATCTAACATTATACCTACTTTCATTTAATATTAAAAAATAAAGTGCTTATTATTTCTTAGGGTATCAGTATCCAACTAATATATATAGTTGTTTTAATTGTTACGAATAGTGTTACTGATACAATTTATACCTATTTTATCTAAAATCTACAGTTAT # Right flank : CGCGTTCACCCACAATATGCTATATGCCTATAGTAAAAATCCTATTTCTGTCTATCTACTAAGTTGAGACTTCTTATAAGCTATTATTATAATACAAGTTATGTAAAATAATTTATAAACTATTAATATAACTATAATTATCTACTCCCCTATATTTTAACATCATCTCAGGTAGACAATCAAATAAAGTTACTAGTTCTATCCTCTTTTTTACCCCACATATCTTTATTTAACCACTTTTTACTTCTACTTTTAAATAATATTACAGAATCTTTATCTTTTCTTATTATACTATCTAATTCATATTTTAGCTTAATTATTTGTGACTCTGCTAATTCTCCTTCAAATACTGAGTTTTGAATATGGGACAAATATTTTTTGCATGTTTTAAAAGTTCTGTTTAAAACTCTCTGCCCATCCTCATCACTTTTTATATCATAAACTAATATAACGTACATTTAAACATCTCTCCTACCACCATATTTTAAATGGTTCATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1555441-1555222 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 1555440 24 100.0 41 ........................ TTAAATGCAGTATGTTGCATATCTCTATAATCTCCACAACT 1555375 24 100.0 41 ........................ TTAAATTTTCCTACATCCTCCATCTGTATAAGTATAAAGCC 1555310 24 100.0 41 ........................ TTAAATGTTTTTATTCTTTTTGTACCAATATACACAGTAAC 1555245 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 4 24 100.0 41 GTTGAACCTTAACATAGGATGTAT # Left flank : GTAATTTTAATTTAATATCGAACCACCTTAAATTAATGCCCGAAAACCTTCGAGATAAACAACGGAAGTTTTCAGGCATTTACTACAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAAGGGAATTTTACAATAGTTTCTTCGATGACTACCTGCTCTATCTTTAAAGTTGGAGTAAAGAGCATTTACGTCTCCGGATAACGATTTCTAAGCTTTAGATGGAGTAAAAACTTTCTCTAAAGCTTAAAACTCTATTTATAAAAATAATTATATATTTATAATGTTATGTGATAAAATATAGACAAAAGTTTTCCCAGGTAATTTTAAATAAGAATGTAGCCTAAGGTATTGATTTAAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCTAAAAGTCAAATCGCCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ACCTCAATTCTTTCCAAACATCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTGGTCCTATATTGTACTATAATGTAAATAATATTATTAAGTATGGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGTAATATTAATAATTTTATCCGTCATAATTGCTATATCACCAAAGCTTGGGTCTATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAACCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAGAAGATAATAAGTGGAAACAAGTAGCTACTGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 1574125-1573834 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1574124 31 100.0 35 ............................... TTATATTTGGATTAACAGTTGTTAATTTAGCACCA 1574058 31 100.0 33 ............................... AATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 1573994 31 96.8 33 ..............................A AAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 1573930 31 100.0 35 ............................... GCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 1573864 31 87.1 0 ............T...............TAA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 96.8 34 GTTGAACAATAACAAGAGTTGTATTTAAATT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAGATGGTAGAGTAAAGGTGAACTTTAATGAAAAGCAAAGAGCTATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTATTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTATA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1578188-1578348 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1578188 31 100.0 33 ............................... AAAAGCTGTTAGAAGTATAGCTTGTTCACCATC 1578252 31 100.0 35 ............................... CTTATGCGTAGTTTCTATATTCCAGTTCTTTTCTT 1578318 31 96.8 0 ..............................C | ========== ====== ====== ====== =============================== =================================== ================== 3 31 98.9 34 ATTTAAATACATCCTATGTTAAGGTTCAACA # Left flank : ATAGGAAGATACTATGTAGATTTTAGCGGAAATATTTATAAGGATACCTATCCATCTAATCTAGAATGTGTTAAAGTTAAATAATTTATAAGGGAAGTCATTAGACTTCCCTTTAATTACCTTATTTTCTTATTCAATTCTTATCAAATATTCTTCTTAAATGTATTTCAGTGCATACAATACCTATAATTATAATAATTGAAATTTATCAATGACGAAATTCTCATTGATAAATTTGAATTATTGCTATATAAATATCTTATTAATATTGAAAATGGTGTCCTATATCCAAGACTATTATTTATATGCTCTGGTGGATATGCTCTTAATACTAATCCAATTACAATAAAAATAAACCCAATAATACAATTTGTTAAGATATTCATAAAATATCACTCCCACAAATTTATGGTAATGCCATTATACCATATTTTTCCTTACATTGCTATTAAGAGCATTTGCATACTATCTATGTACTCCACTAAAAAGAAAGGAACTTA # Right flank : CACTGTAAAATCAAGGTTTCTTAAAATTAAGAATACCATAAAACCATTGATATTTCAACATTTCCATAAAAATTTACCAGGCGATTTAACTTTTGAAAAATCACATTTAAAAATAGTATGTAACCCCTTATAAATCAAGACTCTAAGCTATATTTTCATTTGAAGTCACCTGGGAAAACTTTTATTTATATTTTATCTCATAACACTATAAGTATATACTTATTTTTATAAGTTAAAAAACTAAAAACTCCCATCATGTGAGAGCTTTTAGTTTATCCGATGACGATAAGCTCTAATACTTCCATTTTCTTTAAAGCGGGAGTAAAGAGTAGCTAAGTCCCTGGATAACGATTTCTAAGCTTTATGGGGAGTAAAAACTCCCTCTAAAACCAAGAACTCTGTTTATTATTCTATTTCTTTTTTATATAACTAATCTTAGCAATAAACCCCTATTATCTTTTTAATATTATCTTCTGCATTTATATGGGTTTCTTCCACTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCCTATGTTAAGGTTCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1580759-1580469 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1580758 30 100.0 34 .............................. CAGCTAGAAAACTATAGTAGGGATCCAGCCGTAA 1580694 30 100.0 36 .............................. TTGAATTTATGATTTTTGTTTAATATAAAATTAATA 1580628 30 100.0 34 .............................. CTCATTGGAGCTTATTGGAGTAAAAAAGAAATAT 1580564 30 100.0 36 .............................. TCAAAATTCTGTAGCAATCGAAGAATATATACAGTT 1580498 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTGTAAGATATTGATTTATAAGGGGTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 1590421-1590062 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1590420 30 100.0 34 .............................. TTGGTTTAGCTGTTATTCTTGCGATTTCTCTGCC 1590356 30 100.0 35 .............................. AAATCTAAATATAAAATAGATTTTGATTGGCTTTT 1590291 30 100.0 37 .............................. CCAAACCTATTTACGTACTCTAATACTTGTTCTTTGC 1590224 30 100.0 36 .............................. TTATAGCTATAGCAATAAGTATAGATATAGCTACTA 1590158 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 1590091 29 86.7 0 ...A............T.-..........A | T [1590076] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATATTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCAAAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1593006-1592328 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1593005 30 100.0 35 .............................. GTGAATCGACCAGGGCAGTACAAATAGAAGCAATG 1592940 30 100.0 34 .............................. TGTTAAATGAATTGAATTATTATCCTACTATTAG 1592876 30 100.0 35 .............................. GCTACTTCTGGAAGTAATCCTTCTCTCTTATCTTT 1592811 30 100.0 36 .............................. CATAGTTGCTATAGCAGATACCGAGGAAGAAATAAA 1592745 30 100.0 34 .............................. CTAACTTTAATTTTTAAAGGACTAGATGATAAAA 1592681 30 100.0 35 .............................. TTATCTAAATTAAACTCTTTAATAATCCATAGCCT 1592616 30 100.0 34 .............................. GTCCCTGTACCTAAAAATCTAAGTATTTCTAATA 1592552 30 100.0 35 .............................. TTCTGTTTTCTATATTTTTATCTACTAAGGTTAAT 1592487 30 100.0 35 .............................. TCATTTATATCTTCTTTTTTTAGACCATGGAATCG 1592422 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 1592357 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 99.7 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGCAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGACTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGGTTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATATATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTTAATATCTTGTTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAAGGATATAGTAAAGTTGAAAAATTTTTAAGTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTTATAAAAAATCGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 1596756-1596528 **** Predicted by CRISPRDetect 2.4 *** >NC_022777.1 Clostridium tetani 12124569, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1596755 30 100.0 37 .............................. TGGATTGATCTGGATCTGTTTGAATCCAGAAACAAGC 1596688 30 100.0 34 .............................. GTCAGTATGGGGGTATGGAGTAATAGAAGATTTT 1596624 30 100.0 37 .............................. TTGTCTTTAGGTTTTCCATTCCCATATTGTTTTGCAA 1596557 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGACGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTATAAGGGTTTATATGTTATTTTTGAGTTGGTTTTTCAAAAGTTAAATCGCCTGGGAAAGTTTTAGAGAAATGTTGAAGTATCAATGGTTTTATGGAATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : CAACTAATGATAAAGTAGTAGTGTTTAACACTGACGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTTAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTAATAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCTAAGTAAATTTGGTAGTTCTTTTATTGTAGTTAAACCCAACACAAGTTATATGTAGTAGGATCAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //