Array 1 22821-22492 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJW01000048.1 Erwinia amylovora strain NHSB01-1 NODE_3_length_423938_cov_52.2835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22820 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22760 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22700 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 22640 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 22580 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 22519 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33901-32284 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJW01000048.1 Erwinia amylovora strain NHSB01-1 NODE_3_length_423938_cov_52.2835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33900 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 33839 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 33778 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 33717 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 33656 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 33595 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 33534 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 33472 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 33411 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 33350 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 33289 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 33228 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 33167 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 33106 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 33045 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 32984 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 32923 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 32861 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 32800 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 32739 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 32678 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 32617 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 32556 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 32495 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 32434 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 32373 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 32312 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46910-44808 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJW01000048.1 Erwinia amylovora strain NHSB01-1 NODE_3_length_423938_cov_52.2835, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46909 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 46848 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 46787 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 46726 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 46665 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 46604 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 46543 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 46482 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 46421 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 46360 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 46299 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 46238 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 46177 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 46116 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 46055 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 45994 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 45933 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 45872 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 45811 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 45750 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 45689 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 45628 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 45567 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 45506 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 45445 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 45384 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 45323 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 45262 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 45201 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 45140 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 45079 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 45018 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 44957 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 44896 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 44835 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //