Array 1 1359661-1356326 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT592171.1 Thiomonas delicata strain DSM 16361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1359660 37 100.0 33 ..................................... CGAATCTGCGTCTGGCCAGTCCGGGAGATCAAC 1359590 37 100.0 34 ..................................... AGATCACGCTCGCTGATTAATCGCGACATGCCGC 1359519 37 100.0 35 ..................................... ATGCCGGGCGACAGATCAGGCAGTTCGACGGGCAT 1359447 37 100.0 35 ..................................... CTCGGGTCGGCCATCAATGCGCTGATAGACCTTTT 1359375 37 100.0 34 ..................................... TTCGGCCGTAGCTTCGCGGCGAGCCATTTGCGCG 1359304 37 100.0 35 ..................................... CATCCGACGTCGGCGTGACCGTTGCTGATGCGGCT 1359232 37 100.0 35 ..................................... GTGGCCGACGGCGTCGTGGGGGCCGAAGGTTCCAC 1359160 37 100.0 35 ..................................... ATCGCAATACAGGCAGCGCCCGCACGGAATCAGGC 1359088 37 100.0 34 ..................................... TGGTCCAAACCAATTGCTAAACCGTGTCTGTTCG 1359017 37 100.0 36 ..................................... TTTGCGTGACGCACGCCACGTCTGCAGGTCGGTCAC 1358944 37 100.0 35 ..................................... ACAGCAACGAGGCCACAGAGGATTAACCATGCAAA 1358872 37 100.0 34 ..................................... TCGAATCGCGCGGAATTCGTGATGCGAGAGCAGC 1358801 37 100.0 34 ..................................... TCCTATTGACTAGGGGAGGCCCAGAGCCTTGTGT 1358730 37 100.0 36 ..................................... AGCACCAGCGGCACGCGGATTCTGTTCAACAGCGAC 1358657 37 100.0 35 ..................................... TATGCGGCCATCCAGCAGCGCAATTTCTACGGTGC 1358585 37 100.0 35 ..................................... CTCGCGCACGCAGCGCCACGCCGTAGCCGGTGACA 1358513 37 100.0 34 ..................................... CGCTGAAGCTGGCATCCTCGACAGATCAGGCAAA 1358442 37 100.0 34 ..................................... ACGAGGTTTCGGACCTCGTGTCTACGCCCGTCGA 1358371 37 100.0 34 ..................................... AGAACTTCAGCTACGGCAACCAGAGCAGCATCCT 1358300 37 100.0 35 ..................................... TACCTGGCTCTGATGTACGCAACCTGGCTGCTGTT 1358228 37 100.0 34 ..................................... CGGCTGGCGTGATGAGTGCGGGTTTCGGTGGCAG 1358157 37 100.0 35 ..................................... GTGATAGGCAGCGTCGTCGCGCCCGCTGGTGCAGG 1358085 37 100.0 35 ..................................... CGCAGCGTCGACCTTCCACTGCCGCGTCGGCGTCG 1358013 37 100.0 34 ..................................... ACCACCACGGTGACGCTGGAAATCCAGTTGCGCA 1357942 37 100.0 34 ..................................... CAGTACACCCCCTGACCATCAACGGACCAGAGAC 1357871 37 100.0 34 ..................................... GCTACATGGAGGCGGAGGCTGCGTTTGATGTCCC 1357800 37 100.0 35 ..................................... ACGAAGGCCCTGTAATCGACGTAGCCGGTCGCGTA 1357728 37 100.0 35 ..................................... TCGAGTCGGCATGATCGCCTGGCGTTCTGGGCGCT 1357656 37 100.0 34 ..................................... AGACGAGCGTTGCTGGATTGAGTTCTCAGGTTAC 1357585 37 100.0 35 ..................................... ATCGCAATAGAAGCAATGGCCGCATGGCCGCAATC 1357513 37 100.0 35 ..................................... TTTTCCGGAGCACCATTATGTCGACCACGCAAAAC 1357441 37 100.0 35 ..................................... GTCTGTCCCTGGGTGAGCTGACATGGCCGTCGCAA 1357369 37 100.0 34 ..................................... ATCTGGTTGATGGCGGCCACGTTCGACAGCGGAT 1357298 37 100.0 35 ..................................... GTGAGCAGGTCCTGCGCGCACTCGGCAATCACTTC 1357226 37 100.0 34 ..................................... CGAGGCAATCCATGTCTGAAATGCAAGTCTCGAT 1357155 37 100.0 36 ..................................... TGGGATGAGTACCGCCTGTCGCCGAGCAAGATCTAC 1357082 37 100.0 35 ..................................... GGCTCGCGGTTTCGGTGAAATTCCGTGCCGCCAGA 1357010 37 100.0 35 ..................................... TGACCGTCGTGAGCGGCTTACCTGCTTGGGCGAAC 1356938 37 100.0 35 ..................................... TCTACTGGCGCACCGATAGCCTAAAAGCCGACCTG 1356866 37 100.0 35 ..................................... AAGTGCGGCGGTGAGGTTGACTTCAAGCATCTGGC 1356794 37 100.0 37 ..................................... AACTCGCCGCCGACCTGGGGTTGTAGAACTCCAGCAG 1356720 37 100.0 36 ..................................... CAGATGCTGCAGCAGCAGATCTCCGATCTGGCCTAT 1356647 37 100.0 34 ..................................... TACCTGGACAGCACCCGAGTTCGGCAATACAGGA 1356576 37 100.0 35 ..................................... GTGTTTGCGGGAGGCGCCACGCTTGCAGTTACTGT 1356504 37 100.0 34 ..................................... CGACCCCCCACAGAATCAGTGCGTGTTTATTGTG 1356433 37 100.0 34 ..................................... TTTTTCCGTTAACTCTGCTCGCTAAACCTACACC 1356362 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 47 37 100.0 35 GTCTCGCCCGGCTTAAAACCCGGGCGTGGATTGAAAC # Left flank : TTATCTGGCCCGGTAATCGACCGCAAGACGCCATGCTCATCATCGTGACCTATGACGTCTCGACCGAAACGGCCGCAGGCCGCAAGCGTCTACGGCGCGTGGCCAAGGCCTGCGAAAGAGTGGGGCAACGCGTGCAGAAATCCGTGTTCGAATGTCAGGTCGACGCCATGGAATACGAAGCCCTTGAACGCGAACTGCTCGCCGAAATCAAGCTGGACGAAGATAATCTGCGCTTCTACCGCATCACCGAACCGATCGACATGCGCATCAAGCAATATGGCACCTTCCGTTCCATCGATTTCAACGGCCCGCTTGTCGTGTAGCCCGCGAACCCCGAGCAAAGCCGAAATTCCGGCCGGTTCGCGCATCACGCAAATCCTTGATCTTTCACAATTTGATGAATTTTTCTTGCCTGTGAATCCGGGTCTTCCGGCGCGGAGAACCCGGTTCGCGGAAATGCAGAACAACTCCTTTGTGCAGCAATGCATTGCGCAAGTGGA # Right flank : ACGGTCGCCAACATCAGCCCGGGCATCATCATCACGCCGATCGCCAAGGACGAGTTGAACGGTCCGCGCGGCGAAGGTTATCGGCGCATGATTGAAAATTGCCCGGCCGGCCGCGCTGGTACACCGGATGAAGTGGGCGCCGTCGGAGCCCTTTTGATGGGACCTGACGGTGCATTCATCACAGGCAGCGATTTTCTGATGGATGGCGGCGTAACCGCAGCGTACTGGTACGGCCCGCTGGCACAGACCTGAGCCTCGTCGAAGCGTCCAAGCGCGCCGATGAGGCTATATATCTTTTCTTGAACTGGATTTGAGCGCCATGGCGCCGTCGCCCAGCAAGAACAGGGTGATCAGGCCCACCGACCAGAATGCGGGATATTCCCAGCCCCCGCCCTTGTTGGTGAACAGCCAGCCATTGGCGCCATGCACGAGAACAATCGTGCCGAGCATCTCCAGCGCCAGGGGGATGGCGACCCAAGATGCGTAGATGCCCAGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCCGGCTTAAAACCCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //