Array 1 2766388-2764952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2766387 37 100.0 34 ..................................... ACTTGGCACCCTGCCCAAGGCACACCGGGCACGT 2766316 37 100.0 35 ..................................... TTGAGTGAGAGGTGGGATTATCGTCCGGGGGAGCA 2766244 36 97.3 35 ............-........................ CCGCACCCACGTGATGCCGTGGACGGTCACTCCCG 2766173 37 100.0 35 ..................................... CTGCGGGGGATCTATCTCCTGGTGGAGGCGACGGG 2766101 37 100.0 37 ..................................... GCCAGGTACGCCGCCGCCCGATGCGGATCGGCCACCG 2766027 37 100.0 37 ..................................... CTGATCAGCTCCTGGATTTCGGGGGTGGCGTAACTGA 2765953 37 100.0 36 ..................................... GCCCACGGTGACCAAGCGCGCGGTCACGCAGGGGCA 2765880 37 100.0 40 ..................................... GCCGACACCGACCTGTCGACGGTCGTCCCGCCGGGCGCCG 2765803 37 100.0 37 ..................................... TCCACCAGCATCAGCACCACTGCCTGCCCGTCGTCCA 2765729 37 100.0 38 ..................................... CTCGTCACCGAGGTGGAGAGTCGGTGGCAGGTCGCGGG 2765654 37 100.0 38 ..................................... GTGGCGGCGGGGGGTGGCCTGCTGGCGTGGCTGGCCTT 2765579 37 100.0 34 ..................................... TTCTTCGAGCCGCTGGAGAGCGGCGGCCGCGAGG 2765508 37 100.0 37 ..................................... GGCGCGTTGCAGGGCCAAGGTCGGCTCCGGGCCCAGC 2765434 37 100.0 37 ..................................... TTCGTGCGGGTCGGGTCATGGTAGCGGCCGTGTGGGG 2765360 37 100.0 38 ..................................... CGCTCCGAGGGTGCGGCTCGGACCCGGGCGGACGAGTG 2765285 37 100.0 36 ..................................... CGCACAGCCGATCTCGCAGGCCGGACACGGCCGCCA 2765212 37 100.0 36 ..................................... CATTGGTCTATGGGGATGGGCTTGAACTGACGCAGG 2765139 37 100.0 38 ..................................... GGGTTCAAGACCACCGGCGTCGGCAAGTACGCCGACCT 2765064 37 94.6 38 ....................T...............T CGCAATACCGGCCGGTGCGTCCCAATGGTCGTCAACAG 2764989 37 81.1 0 ......T........C.CC.........A......CT | T [2764973] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 98.6 37 GTGGCGCCCGCCTTCGCTGGCGGGCGAGGATCGCAAC # Left flank : GCCAGTCCACTGCGCTGGAGTGAGCCTGTCGTGTCCCGTTTCAATCCGCCTGCGTAGCCCGTCAACGAACCCGTGTGAGGCTCGCCGTTCACAACGGGGTCATTGTGGAGGTGGACGGGAGGGCAGGAGCGCGCTCAGCGTCGTCGGCCGTCTCATCGGCTACTACCAGGGGTGTGCTGAGCCGGTGGAGGATTGAGGTCGGTGACGGTGGTGCTGGCGATGGCGGTTCGTCCTTCCTGCTTGTCGGCTCCGTGGACACCGCAAGAGCTTGAACGACACAATCATCTCCAGGTCACCTCCTCCTCCCTGGCCGTTAGGCTCACACCGTGCCAAGGGCCACTGGACCTCAGTCGCCGTCGGTATCGCAATGCTTCGGAACCTCCAATGGACATAAGATCCCTGGGAGGTTTCGAACTGCTTTTGAGGCACTTTGCCGGTTTTGTGAACTTCAGAACGGTGTTGTATGGAGTGCGTTCGGTAGTTCTTGCAGGTCAAATGCC # Right flank : ATGAGAATGCGGTTGAGGACGGTACCCGCGAATGCAGTGGCGCCTGACTTCTAGCCGCCCCCCGGTTGACTACGCGTGCCCTGCCGTGTGGACGGTGTCATGCTGGTTGGGGCGGTTTTGGTTGAGGAGGGCGTGGAGGTCTTGTGCGGCGGGGCGGGTGCGTTGTTCGCGTGGGATGGCTTGCAGGATCGCTCGGCCGGTGTCGTTGATCATGTGGCTTTGCTGGGTGGACGGGAGGGCGTCGAGGATTTGCGTGGCCTGGCGGGCGCCGGTGTCGGTTCCGCCGTTGACGACGGTGCATAGCGCCTCGTGAAGCCGGACGTTGGCGCCGTATTGGTAGTCGCGGGTCCGTGACAGGACGAGCTCACGGGCCGCGTCCGCCTTGGCCTGGTCTCCCTCGTGTGCGTAAACCCAGCTCTCGGCGAATGGTGCCTGACTTCCCGTTGCGAGTCCGGGGAGGATGCTGGTGCGGGCGTCGTCGCCTTCGTATCCGACGAAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCTTCGCTGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.30,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 2774275-2773949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2774274 37 100.0 35 ..................................... TGGATCACCTGGTACTTGTCGGAGACCACGCCGAG 2774202 37 97.3 38 ......................C.............. CTGATCACCAGCCGGCTGCGGGAGGGCTGGCACGACAT 2774127 37 100.0 37 ..................................... GTCACGATCGGCGGCCGTGACCTGCCGGTGCTGACGG 2774053 37 94.6 31 ......T..................A........... TGCAACCCCGAGGACGGGTGTCGCTCACGCG 2773985 37 73.0 0 ......T.........AT.AC..G......C.A.GT. | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 93.0 36 GTGGCGCCCGCCTTCACCGGTGGACGAGGATCGCAAC # Left flank : GCGCCAGTCCACTGCGCTGGAGTGAGCCTGTCGTGTCCCGTTTCAATCCGCCTGCGTAGCCCGTCAACGAACCCGTGTGAGGCTCGCCGTCCACAACGGCGTCATTGTGGGGGTAGACGGGAGGGCAGGAGCGCGCTCAGCGTCGTCGGCCGTCTCATCGGCTACTACCAGGGGTGTGCTGAGCCGGTGGAGGATTGAGGTCGGTGACGGTGGTGCTGGCGATGGCGGTTCGTCCTTCCCGCTTGTCGGCTCCGTGGACACCGCAAGAGCTTGAACGACACAATCATCTCCAGGTCACCTCCTCCTCCCTGGCCGTTAGGCTCACACCGTGCCAAGGGCCACTGGATCTCCGTCGCCGTCGGTATCGCAATGCTTCGGAACCCCAATAAACATATGATTCCTGGGAGGTTCCGACTGCTTTTGGAGTGCTTTGCCGGTTTTGTGAACTTCAGGAAGATGTTGCGCAGAACATGTTCAGTAGTTCCTGCCGGTCAAGTGCC # Right flank : TTACCGGCAGGCCCACCCGGCCGCCGCCTCACGGCCGCACGCCCGCCACAAAGTTGCCTGCTCCAAGCAGGCCACGTAAAGGCCGAGGCACCGCAGCGGTATGTCCGCGAGGACCGCACCCGCGGCGCCGCCGGAAGCCGCGTCTAGGGGCTCGACCTGTGCAGCGTGGAGGCCACGCCGACGCCATCACGCCATCGAACGCGATGGAACCCGTTCAACATGCCGCCCGCTGCGACAAGTGCGAACACCACGCCACCTGCGCCGCCGCTTACGACGCCCAAGGTCTCCGCGAACTGGTGCACGGCGTCCAATCCCTAGCATCGCGCGGCGGCCACGGGAACGGTCACGTTGTCGATGGAGCCGCCGATGTGTGCGGCTCCCCAGTGCGCCAGCTTGGCGGCCAGCTTCGGCGTGGGGGCCTCGCTGACGGGCCGCCAGCCGTAGCCTTCGACCTCTTCTGCCTGGAGCACCACCTTGGGCCCCTGGACCCAGAGAGCCCA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCTTCACCGGTGGACGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 6247866-6246130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6247865 29 100.0 32 ............................. CCGTCGAACACCGTCGTCGCGGAGACTGGGTA 6247804 29 100.0 32 ............................. GACCGCCCACGCCCGCAGGGCGGCGACGATCG 6247743 29 100.0 32 ............................. TGGATCCGGAACCCGACCCGGATGAGCTGGCC 6247682 29 100.0 32 ............................. GTTCTCGCCTTCGACCCCGGCCGCCGCAGGTC 6247621 29 100.0 32 ............................. CAAGATCGCTAAGGCGGTGGCCTGATGACGTA 6247560 29 100.0 32 ............................. TCCGCCACCGGGGGCCTTCGCCGCATCAGGCG 6247499 29 100.0 32 ............................. GATTGGAGACGTGACGCATAAGCTCCGCAACG 6247438 29 100.0 32 ............................. CTCGTCGACGAAGCGATCCGTGCGCTGCGCGA 6247377 29 100.0 32 ............................. TCGTCAGTCTCGCCTCCGATCGAGACGACGGT 6247316 29 100.0 32 ............................. GACAGGACCAGGCCGGTCCCCGCGCACAACAC 6247255 29 100.0 32 ............................. GCACTGCTCACGCGGCCACGAGTGGACGCCGG 6247194 29 96.6 32 ............................G CCAGCAGCTCCAGCCCCGCCGGGCCGTACAGG 6247133 29 100.0 32 ............................. GCACGGACCGCCTTGTCGGTGGCCGGGCCGAA 6247072 29 100.0 32 ............................. CGCAAGGGGTTGCTGCGCTCGGACCTGCTGAC 6247011 29 96.6 31 .........................C... CCCACAATTTCAGCAGGTATTTCGCGGCGAA 6246951 29 100.0 32 ............................. GACGACGAGGACGGGGGCCTGGCCGGGCGCTG 6246890 29 100.0 32 ............................. GAGACCCCGGTCACCGAGTTCGGCAAGGTGAT 6246829 29 100.0 32 ............................. GTGCATCCCGGGTGCACCCGCCTCCCGGATGC 6246768 29 96.6 32 .......T..................... CCGTAGACCACGACGATCGCGATCATTGGGCG 6246707 29 96.6 32 ..............G.............. GACCGGCGCCCGAGCGGCTGGCTCGTCACGCT 6246646 29 96.6 32 .C........................... TGGATCCGGTTGCCGTCCGGCCCCGTGGTGAT 6246585 29 96.6 32 ........T.................... ACAAGGTGAACGACCGGTGACGGCCAAGTGGT 6246524 29 100.0 32 ............................. CAGTGGAAGACCTGACTCAGATTTCTGAGTCC 6246463 29 96.6 32 ...................A......... ACGACGGACGGGTCCGGGAGCTTCCAGGCTCG 6246402 29 100.0 32 ............................. TCGCGGATCTCGCCGTTCGTGTCGCCGCTACT 6246341 29 100.0 32 ............................. GCGGACGTGCCGCTCGTCCTTGAGTGGTGCCC 6246280 29 93.1 32 ................T...........T GCCGCGCTCGGGTAGAACAGGTGGACGTCCAA 6246219 29 100.0 32 ............................. CCGGCGTAGACGAACACGCTGCCGACGCCGAT 6246158 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.9 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCCCCGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTCATGGAAATCGCCCCCGGCGTCTTCATCGGCGGCCCCTCAGCACGCATCAGGCAAGCCCTCTGGGACGGAGTCCACCAGTACGCCGACACCGGCCGAGCCCTCCTCGCCTACAGCACCAACAACGAACAAGGCTTCACCTTCGAGACACGCGACCACAAATGGCAACCCATCGACCACGAGGGGCTCACCCTGATCCGCCGACCCAAGAACCAGCCCACCATCTCAGCAACGCCTTCACCAACCGGCTGGAGCAAAGCCAGCAAACGCCGCCGATACGGCAAACGCTGATCGACAAACCCCGGCAGAGTTCCAATCGCCTTACCCGGGTACCTTCCCGCCATGGCCACTCCCATAGCCCCAGCCTTATTGCCCGCCAAAAAGGGGGTTCGTATAGCAATGTCCGATTTTAGAGAAGTGCTCAAAAGCAGGCTCCGCCGCGGATAAACCCCCAGGTCAGGAAGT # Right flank : CCGCAACCACCGGAGTGCGGGCCCGCACGGGGCCCCTCAGGCGGTAGCGGTGACCTGCAGGCAAAGCTCGCCACGCGTGGCCCTGTGCTCGCACATTGCTCGCACGAACGGCTCCACAGAAGACCTCACACAGCGCCACCAGACCCAAGCGCGAAATGCTTCGATGAGCTCCTGACCACTAGAAACTCTACAGACCGCATGATCCGCAACGCACACCAAGGATAGGGAGCACACTCCTAAAGCGGGTGTCGCAGGTTCGAATCCTGCCGGAGGCGCCAAACCTAAGTGCGCTGACCAGCTGAAACGCAACGGCCGGAGGCGCGTTCGCCATTCCGGGTGCCATCCGGAGGCCGAGATGGCACATAGGGGGCACCATCGGCCTCCCCCAGTTCCTTCGTGGCGCTCCGACGAATCTTGGGCCGAATTCCGGCGCGGTTGTCGCGCATCCACCACACCGGGCGGGTGACATGGGGCGGCGTGGTCATTGTGGACTCCATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7555483-7557156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7555483 29 93.3 31 .....-.......................G CGCTGCACCAGCTCGGCGGGCTGTGGTGGCT 7555543 30 100.0 31 .............................. CGGGGGTGCCGGTACGGGTGGTGCGGTATTC 7555604 30 100.0 31 .............................. GGATGCGCAACGACGTCTCGCTCGTGGTGAA 7555665 30 96.7 31 .............................A CTCCACACCACCTCACCGTCCGGCCCCTCGG 7555726 30 96.7 31 .............................G TGTCCGGCGTGGTCGACGGGCGGCGGGACCG 7555787 30 90.0 31 ...........CT................A CAACGGTGATCATTGGGCGACATCCTGGGAT 7555848 30 93.3 31 ...........C.................A TCCACCCCGAGATCCACGTCGACCCCGGTCC 7555909 30 100.0 31 .............................. CGAACGGGAGCTGGGCCTCCGGTGAGTGACC 7555970 30 93.3 31 ...T.........................G CGTAGACCACGACGATCGCGATCATTGGGCG 7556031 30 90.0 31 .C........T..................C CGCCGACCAGAGCCGTCAGCAGCGGCGGCGG 7556092 29 93.3 31 ........-..C.................. ATCGCTTCACCGCAGCTGGCCGGGACATGCT 7556152 30 93.3 31 ...........C.................G TGCGCAGGACGGCCCGCGCCACGTCGATGGT 7556213 30 93.3 31 ...........C.................C TGGCCTTCCACCTGGCCGACCCTGACCTGGC 7556274 30 96.7 31 ...........C.................. CCAGGACGGCGGGCTGCGCCAGGTAGGTCCA 7556335 30 93.3 31 ...........C.................C TGGCCCGGCTCCGCTGACCGGAGCCCGATCA 7556396 30 90.0 31 ........G..G.................C CCTGCAATCTGCCCAAGCGGGGCGGGGACGA 7556457 30 93.3 31 ...........G.................G AGGTCAGGCTGTCCGGTCAGGGCGTCGGCAA 7556518 30 90.0 31 ...........G................GG CGTCCGACTTGATCTAGCTCTGACCTGCGCA 7556579 30 80.0 31 ...T.......G.G........AC.....C TCGCCACGACCTTCGTGCACGTCGTGCAGGC 7556640 30 96.7 31 ...........G.................. CCTCGCGTACGGGCTACCCGATCGCGGCATC 7556701 30 90.0 31 ...........G.....A...........C CAAAGGCGCCGACCATGGAGCGCGTCTACGA 7556762 30 93.3 31 ...........G...A.............. CACAGAGAAGAAGGACAAGCCGACCGGCCAG 7556823 30 93.3 31 ...........G.................C GCCCACCCGTCTCGCGCGGGCGCCGCAGGGC 7556884 30 93.3 31 ...........C.................G GCGACGCACCCGCCTTAAAAGCGGGCTCACC 7556945 30 76.7 31 .......T...T.....T.....AA..T.G GCACCCGTAACGCCACCCCGTCCATGCTCAA 7557006 29 90.0 31 ...........-..A..............G AGATCGTCCACGGCCGCCGCGAGGTCGTCTG 7557066 30 90.0 31 ...........G................GC CGGTCGGGATCAGCGCCTGGCCGAGTGAGAC 7557127 30 80.0 0 .........ATGT...............GA | ========== ====== ====== ====== ============================== =============================== ================== 28 30 92.1 31 GTGCTCCCCGCACACGCGGGGATGGTCCCT # Left flank : GCCTGTTCGTCCCGGCGCACCTCCCCGACCCGCACCTGGACGTCGCCCGGCGGCTCCAGCGCTAGACCCCGTGGCCCCGGGTCCGGATGGGTCCACCCGGGGCCACGGCATACTTCTTCGAACCGGTCGCATACTGCTGGCCAGCCGCCCGCCGACGTGGTGCACTCCCGAGTCATGGAGGCCGAGCGGCTCGGCGCGTACCGGCGGCGCAATCACCGGACGTCCGTCCGCCCCCGGTTCCGCCCCGGACGCGCTACACGACGGATCTCCACCGAGCCAGGGTGTGTGGCCGATCCTCGTCTCAGGGACGGCCCAATTGGGGCCGCCCTGCCGCGGCAAGATCCTGATTTCGCAGACCCGGGGCCGAGCCCAGATGATGATCATGACCCCTCGGCAAGAGTTGACCAGTACGCTTTGTTGCCTGCTCGTCCGAGGCCTCGGAGCCTGGCAAAGTGCTTCAAAACAACACGATCGTTCGATGAACCCGCAGGTCAGTAAGA # Right flank : ATGGAGGTCGGACAGGGATCCCGATGCCTGCCGCTCGCGGTAGAGCTGTCGGTACAGGTGGCCGAGTATCCGGCCGAGACCTGCTGACGAATGCGTGGGGACAGCAGCTTCCGCTCTGGACGCTAGAACGTCAGATGCGAAGCGTCAGGGCGAGCGTGCGTGCTGACGCGGCGAAGGCGCGCAAGAAGGACAAGGACGCGGACGTGACGGACATCCCCGCGGACTTCCGCCTTCACGACCTGCGGCACTACTTCGCGTCGCTGTTGATCGCGCCGGGTGCCGACGTGAAGACCGTCCAGGCGCCTCTACGGCACGCGTCGGCCAAGACGACGCTGGACATCTACGCGCATCCGTGACGAGTCGACCCGCGCGGCAGTCGACGCGGTTCTTGTGGCTCGCGCCTAACTGAGCCGGAACCAGGTAGGGGCGCGCTGATGTTCGGCCAGGTCAGCGCGCCCCTTGGTCCTAGATGTCGTAGTAGAGCTCGAACTCGTGGGGGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 8236529-8234002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8236528 29 100.0 33 ............................. GGTGAATCCAGGTGTCCGTGATGTCGAACGGGG 8236466 29 100.0 32 ............................. AGGTGGGATGGCGGGTCAGTGCGGCGGGGATT 8236405 29 100.0 32 ............................. GCGATGCCCGACGCGGTGCCCAGCGTCAGCGC 8236344 29 100.0 32 ............................. AGACCCGCCCAGGTGATCACGTAGTACAGGAT 8236283 29 100.0 32 ............................. GTGAGGGTCGTGACGCCGCCGGACGAGGACTT 8236222 29 100.0 32 ............................. AGGTCCGCCCAGGGCTGCAGGGCGGTCTCCGC 8236161 29 100.0 32 ............................. CCAGTCGCGGAGCTATCAGCAGTCGACCAGGT 8236100 29 100.0 32 ............................. ACTGAGGACGCGGTGAAGGCCGTCCAGGCGTG 8236039 29 100.0 32 ............................. CCGGGTCTGTTCGGGACGCTGACGGCGGAACA 8235978 29 96.6 32 ............................C CGATGAGCAGGCCGAGTGTGGCGATGCCGAGC 8235917 29 96.6 32 ............................T CTGGCGTTCCGTCCAGTTGATGTACTGGATGC 8235856 29 100.0 32 ............................. GAAGCGGACCGGGCAGCGAACTCCTGCCGCTG 8235795 29 100.0 32 ............................. CGAGGTGAACTCCCGCCTCCCGCCACGGTCCG 8235734 29 100.0 32 ............................. GCCGCCTTCGCGGGTGGCGCGCACACGAAAGG 8235673 29 100.0 32 ............................. CGCCTACGGTCCTGGCTCAAGGCGGCGTACGG 8235612 29 100.0 32 ............................. TCCACGGCCGCCCAGACGGGCGCGTCGTCGAC 8235551 29 100.0 32 ............................. CGCCTGGCCGACGTCTACGGCACCCGCGCCGC 8235490 29 100.0 32 ............................. ATCGCCTTGGCCTTGTCGGCAGCCTCGGCAGC 8235429 29 100.0 32 ............................. ACCGACGGGTCCAGGGTGGTTCTTGAGGACGG 8235368 29 100.0 32 ............................. TGGCGGCGGTCACCGGGTCTCCTCGTCGATCC 8235307 29 100.0 32 ............................. CCGCCGGAGCACCTGGTTGACGCGTTTGTCGG 8235246 29 100.0 32 ............................. GCCATGGACGCGCGGCTCGTCAGTACCGGCGA 8235185 29 100.0 32 ............................. CGCTCGGCGCGCTCCTCCTCGTCCTCCAGGTC 8235124 29 100.0 32 ............................. GCGATCCTCGTCATCCGGGGTGACCGCGCCGT 8235063 29 100.0 32 ............................. CTGGACATTGCCTCTAACCCCGCACTGGCGGA 8235002 29 100.0 30 ............................. GCGGTCGCTGCCCTCAGCCGCCTTCTGGGT 8234943 29 100.0 32 ............................. GTGGCCATCGCGGTCACCGTGATCGATCTGCC 8234882 29 96.6 32 ......T...................... CCCGCCAAGGTCGCGGCGCGCGGCCAGGACGC 8234821 29 96.6 32 ............................A GTAGAGGCGCCTGTAAACCAGGGTGTACCAAG 8234760 29 100.0 32 ............................. CGATTCGTCGGCCCGGCGAACCCGGGCGAAGA 8234699 29 100.0 32 ............................. CGGGGGCCTTTGCCCTGGCAGCGCCAGTTCGC 8234638 29 100.0 32 ............................. CGGTCGCCGGTGGGATCCTGCTGGGCGTCGGG 8234577 29 96.6 33 ............................A GGTCTCGGCGTACTTCACTGTCAGGCCCAGGGT 8234515 29 93.1 32 .CC.......................... TGCCTATGGAGCCTTTACGGGGAGAGGGCGCA 8234454 29 100.0 32 ............................. TCCGCCGCCGCTCGTGCGGCCGTCGCTGCAAA 8234393 29 96.6 32 .................A........... TCGTCGCCACCTTGAAGGTGTTCGTCGCCGAG 8234332 29 100.0 32 ............................. AGCTGGGGACGTCCACGTGATCTCCCCGCTGA 8234271 29 100.0 32 ............................. TTAGTTGGTGAGGTCCTCATCCCTCGGCCCCG 8234210 29 93.1 32 ....................A.....T.. AGGTCAGCGTACGGCCGCCACTCGTCCCGGTA 8234149 28 96.6 32 .....................-....... CCGGTATGCGGCGCCTCGATGATCTTCCCCGC 8234089 29 100.0 32 ............................. AGCGACCCGGCGCGGCGGGCCCGGTTGGCGGA 8234028 27 93.1 0 ..............--............. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 98.9 32 GTTCTCCCCGCGCGGGCGGGGGTGGTCCG # Left flank : CCCCGCCATACTCCGGCGCCCGAGCCAGCAACTTCCGGTAAAGATCATCGACGACAGCTTGAAATGACGGAGAGATCTTCCCGACATCATGCAGGCCAGCCCAGAAGCAAACCAGTCTGCGCATCTCAGCCCTGGCAGGCACACCGCCGGGACCCGAACCATCCCGCAGAACCGCGAGCTCCCCGATCCAGGCATCCCATAAGGCACCCGCGATCGCCGCAGTATCGATCAGATGACAGATCACCGGATACGGCGACGGAAGCCCCCGGCGCTTACCCCACAGACGAGCATCCACAGCCGCCATTGGCTGAGACTCCCGATCACCATGTGCCATGAAAACGACCTCGCTCCGTCTACTCACCGTGCGCAGCCACTCAACCACACCCCACCGACAGGACCAGCGCGATCCACGTAGGCTCACCCCATGCGCGACAGCCGTCGGCTCTGGAAGCACTCATCTCAAAACGGTAACGACCCTGCATCGCCCCAGGTCACGAAGT # Right flank : GCAACCCAATGAGCCCTTTTCCATCCTGGGCGGGTTGGTCACGAGCTGGATGCGGATCGCCGGTTGTGATCGCCAGCTAGCGAAGCTCCCAGTAGATGCGGAGTCGACCAAGACTCGACCGCACCCACCAGGAGCTTCAGTGCTGCTCTATCGCGCTGCGCTGGATCTGTCGCCCGCCTACCGCAGATACGTGGCCCACCTCCTCCGCGCTCACCGCCGCCGCCGGATCGGCTCGCGCTGGCGGGCGCTGCCGTCCAAGCGCCAGGCCCTGCTGATCCCGGTGCACTTGCGCCGCAACGAGACCTTCCCCGCCCTGGCCGCCGCGTTCGGCGCCGGGCCGGCGACCGCCCACCGCTACGTCACCGAAGTGATCGAGTTGCTCGCCGCCCCGGCGCCCGGCCTGCGCACCGCGATGCGCATCGCGACACGCAAGGCGTTGGTGACCCTGGACGGCACCCTGGTGCCGACCGACCGGCTCACAGGCGCCGACGACCGGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 8248605-8246865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 8248604 29 100.0 32 ............................. GTCCAGGCGCGGATGCAGCTCCCGGCCGGGGA 8248543 29 100.0 32 ............................. CGCGGGAGGCGGGCCCTGGGGCGGCTGCGCGG 8248482 29 100.0 33 ............................. TTGCGGCGCGCGTCGCGGCGTTTCCAGCGCAGG 8248420 29 100.0 32 ............................. TGGCAGGACGTGGCGGCGGCGCTCGGCATCAG 8248359 29 100.0 32 ............................. TCGCGGGTGATCATGCCGCCGAGCCAGATGGG 8248298 29 100.0 32 ............................. CCGCCGTGCGCGCGGGGACGGTGCGGCCCTAC 8248237 29 100.0 32 ............................. GAACTGGCGGCCGCCCTCGACGGGACGGAGGC 8248176 29 100.0 32 ............................. ATGCAGGCGGAGCTTGCCCAGGCCCGGGCGAC 8248115 29 100.0 32 ............................. CGGTGCGTGCCGTCGCCGCGATCCTTCGCGGA 8248054 29 100.0 32 ............................. TCTGGTCGGACGAGTCGCACACCGAGTTCATC 8247993 29 100.0 32 ............................. GACGTGCACCTGCTGTTCACCGGCTCCGGCGG 8247932 29 100.0 32 ............................. GGCATCGGCGGCACCTGGAACTATTCCGGTGA 8247871 29 100.0 32 ............................. GCGCATGAATCGCAGGTCAGAGCGGTTCTGGC 8247810 29 100.0 31 ............................. GGCAGGGTGGCGCCTAGGTAGTGCTCGATCT 8247750 29 96.6 32 .G........................... TCTTGTTGGGCGAGGAGGCCGCGGACGGCGTC 8247689 29 96.6 32 ....................A........ CCGCGTACCCCGCGGTTCCAAACGGCTGCGCA 8247628 29 100.0 33 ............................. ATGTCGCGCGTGGATGCCTGACATCCTCGGGCA 8247566 29 100.0 32 ............................. CGCGAGACGGTGGCGTCGCGCGGCTTCATGTA 8247505 29 100.0 32 ............................. CTCGTCGGCCCAGAGGACGACCAGCCGGTGGT 8247444 29 96.6 32 ...................C......... CTCGCCGGCCCAGAGGACGACCAGCCGGTGGT 8247383 29 93.1 32 ......T............C......... GTTGAGCGCGGACACCGCAAGGCCAAGGTCCC 8247322 28 93.1 32 .......T........-............ AATGGCTGCGCCGCGACGAGCGGGACGGAGAC 8247262 27 86.2 32 ..........T..........--..C... CAGCGAACGTCGCCGATGTCACCCTTCGTCTT 8247203 28 93.1 32 ....-..........A............. ATCGGGCGGAACAAGGCGAAGTGTGAGCGGTA C [8247187] 8247142 29 93.1 32 ...T...........A............. GGACACCCGTGCGTCACGTCCGCAGCCTGCGC C [8247125] 8247080 29 86.2 32 .....TA........A.........C... GTCACCGTGCTGGCGGTGGCGGTGTCGTCGCG A [8247061] 8247018 29 89.7 24 ..............G.....A...A.... TTTAGGGTCTGCGCCAGCGCTGCT T,CC,A [8246988,8246993,8246997] Deletion [8246966] 8246961 29 86.2 35 .G.........T...............GC AATGTCCCCCACTTCTCGGATGTGGTGGTGCGCGG T,T [8246940,8246954] 8246895 29 89.7 0 ......G............A....C.... | TT [8246889] ========== ====== ====== ====== ============================= =================================== ================== 29 29 96.6 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GCGGATACCAACGCCCCGAAGAAGCACCTCCACGACATGGCCCGGCAACTGGAGGCCTCCGAGCGCTCGGCCATGCCAGTGAACGAGTTCGTCAAGGCCATCGAGAGGGTTAACAAGCGCAGGAAGGCCGGTTCACGATCCCGACCCCGCGCCGTCGGCCCTCCGGCGACGAGGTCGCAGGGTCAGGACGGCGGAGCGGGGACCAGATTCGCGGCCGCCACGGCCGCAGCCACCAGGTTGGAGGCCATCGCTCGTCCGGTGCTGTGCGACCAGTCCCGGCCCGCTTCGCTCTCCAGGTAGCCCGGGCCAGGCCCGCGCCACGCCTTCTGCCACCATGAGCTGAACTCCAATCCGTCTAGCCACCGCGTCCAGCCACTCACCACACGCCACCGGCATAACCAGCGCGACCCACGTAGGCTCACCCATGCGCGACAGCAGCCAGCCCTGGAACCGCTCATCTCAAAACAGTAACGACCCTACATAACCCCAGGTCACGAAGT # Right flank : TAGCTAACGGTCGTCATGACAAACGCCATGACATTCTCCCGGCGGGAACGGGAGCGGGAGTGGTCCGGTCCAGGAGGATCACGGGGCTGACATCAGCCAGTCTGCACTCCGCCCGCCGAGCCGCCGGGTGGATCGCCTGGTTGTCCGCCGACCTGCCGCCCTGGCCTGCCACGGACTCTCTCGACCGGTGAGGCGTCAATGATCCTGCTGCACCTGCCGCATCGCGTCGCGTCCGCTGCATGGTCTGCGTGGAAACCGACCCCTACAGCAACGACGGGGTAGGGACGTTGAGGTCACTGCGGCTGAACGTGTCCGGACGCGTGGCAGCTCGCCAAATCGTCGCCGATCTCGGCGAGCAGAGCCCGCTGCCAGCTCGCGACGTGGCCCCCAGGTTCCGCGAGGGCCTCACCGGCAGTTGTCAGAGTCTAAGCCGCAGGCCGACCAGTACGAGCTGAGTGCACGGGCAGGAGCCCGGTTCACGCTCTGAGTGCGGGGCGTGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 8278815-8278423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059572.1 Actinomadura sp. 32-07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 8278814 29 100.0 32 ............................. AGTTTCTGACGCAGGTGCGCCAACTGCTGCTG 8278753 29 100.0 32 ............................. GCAACCCATGGCCAGGCGGTGGCTCAGGATCT 8278692 29 100.0 32 ............................. GCCGCCCCCGCCATCCCCGCCATGCCCGCTCT 8278631 29 93.1 32 ........A............A....... ACGAACGCGCAGTCCGGGCCGCGAAGGTCCAG 8278570 29 96.6 89 .......T..................... CTCAGGTCCGCGCCAATCAGGTTCGGGCCGTTGTTCTCCCCGCGCGGGGGTGGTCCGATCGAGGCGCACCGGGGGATCTCCGCGGTCCG 8278452 29 89.7 0 ......T....................GA | T [8278426] ========== ====== ====== ====== ============================= ========================================================================================= ================== 6 29 96.6 44 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GAGGTCCTGACGAAACCTGTGGCGGCGGAGGACTTCTTCGGCGCGAGCGAGGCGTGGGCGCCAGCGGCGCACGCGATACGCGGCGGCACCGAACGCAAGCCCCACGAGTCGGCCAGCCTGTAGCCCGTGGGCACAGTAAGGCGGGACCCGCGCCGTCGGCCCTCCGGCGACGGGGTCGCAGGGTCAGGACGGCGGAGCGGGGACCAGATTCGCGGCCGCCACGGCCGCGGCCACCAGGTTGGAGGCCATCGCTCGTCCGGTGCTGTGTGGCCAGTCCCGGCCCTCTTCGCTCTCCAAGTAGCTCGGGTCGGGCCCGCGTCACGGTTTCTGCCACCATAAGCTGGATTCCAATCCGTTTAGCCACCGCACCCAGCTGCGCAATGCGCCACCGGCATAACCAGCGCGACCCACGTAGGCTCACCCTATGCGCGACAGCAGCCAGCCCTGGAACCGCTCATCTCAAAACAGTAACGACCCTACATAACCCCAGGTCACGAAGT # Right flank : CGACGCCTGAAGACTGGATCTGGCCCACTTTTCGGATGCTGTTGGTGATGTTGGGCGTTGTTAGTCGGCCGGTGGCGTGTGGAATCGTTGGCAGAGCTGCTGGAATGGACTGGTCGGACGTGAGAGCCGGTCGGGGATGGTGCCGGGCGGGTAGCATTCGGCGAGCCGGATGATGTTGGTGCTGGCGGCGGTGAGAACGTGCTGGACGTGGGTCTTGGCCAGGCCGCGGTAGCGGCAGCGGCGCAGGCCATGGGCATGGACGGTCTCTGACACGGTGGCCTCACAGCCGGCGCGCTGTGCGTAGCGGGCCTGCCATTGGAGCGTCTGCTGCTCGGCTCTTGCGCGGGTTTGGATCTTCTGCAGGGGCTCGGGCAGCAGGGTGATGTGGCGTCCCTTGCCGTCGGCGTTGCCGGTGCAGGCCAGGCGGTCCTCGCAGACCCGGCAGGCCTTGCGGGGGAACAGCACCGACAGGTATGCGCGACCGTCGCCGGTGGCCGGTT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-1.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //