Array 1 152269-153577 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBZ01000001.1 Cronobacter sakazakii strain SD47 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152269 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAACCGA 152330 29 100.0 32 ............................. CGATCCTGTTGCTACCGGTTCCCACACCTTAG 152391 29 100.0 32 ............................. GGCGGACCGCGCCGGGGCAGCTATCGACAGGA 152452 29 100.0 32 ............................. AGATATCGTAAAACAATAGCCTCATAAACCTT 152513 29 100.0 32 ............................. TGCCTGCCGCTCGCTTTTTTGCTCGGATTTGA 152574 29 100.0 32 ............................. TATTTGGCTGGTTCATGCTATCGCCGTAAACT 152635 29 100.0 32 ............................. CTGTTTATCCTGATAGAGATGACCGCCGTTCA 152696 29 100.0 32 ............................. CTGCTGGTGAAACTGCCTTTCGTGAACGACAT 152757 29 96.6 32 .C........................... GCTACTTCCTTGTAAATCTCTGATTGCAGGCC 152818 29 96.6 32 .C........................... TGTATATTTGCGCAAATAACAGCCAAATGTGG 152879 29 96.6 32 .C........................... TTCGAACCCACGTTGCGCGATAAAATTTTATT 152940 29 100.0 32 ............................. GCACAGGAACGCCGCAGGCAGGCGTGAATATT 153001 29 100.0 32 ............................. CCTGCGTGCCGGAGCTGCGGCGCGCGCGGCCT 153062 29 100.0 32 ............................. CCGAGAATATGTCAAAGGCACATGCGATGAGG 153123 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 153184 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 153245 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 153306 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 153367 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 153428 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 153489 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 153550 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACCGCTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179864-180685 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBZ01000001.1 Cronobacter sakazakii strain SD47 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179864 29 100.0 32 ............................. TGGTTTCCAGTGTCTGGCCTTCCCTGTGCGCC 179925 29 100.0 32 ............................. CGAGGGTAGTTCGTCTCTCGCCAAAAACCTGA 179986 29 100.0 32 ............................. ATGGCACGGGGCGCGGCGTGCCCGTTGTTACA 180047 29 100.0 32 ............................. GCTTCGCCACTTTGTGGGAGACCATCTACGGC 180108 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 180169 29 96.6 32 ................T............ GCGGAGTGTCCCCCGTAACCGGCCGCGTGCGG 180230 29 100.0 32 ............................. CAGCAACAAGCTGACGATGCAGCCAATTAATG 180291 29 100.0 32 ............................. TGCCTTGTGCATCAGGCACTTAAGGGTTTATG 180352 29 100.0 32 ............................. ACGGCGTTGTTGTGTACGCCCGCACCGGGTTA 180413 29 100.0 32 ............................. CGCGAATCGACGATATGATTGAAAGGGTGGAC 180474 29 100.0 32 ............................. GGGCTTTGTGGTAACGAAATCCCGATCAGCGT 180535 29 100.0 32 ............................. AACTGGCCGAGGATATCGAACGCCAGGTCTGG 180596 29 100.0 32 ............................. GCGCTGGTAGCAGCCAAAAAACGGGGCGTTGA 180657 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGTACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAAGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //