Array 1 171246-172860 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZME01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171246 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171307 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171368 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171429 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171490 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171551 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171612 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171673 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171734 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171795 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171856 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171917 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171978 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172039 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172100 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172161 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172222 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172283 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172344 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172406 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172467 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172528 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172589 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172650 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172711 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172772 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172833 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189368-191532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZME01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189368 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189429 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189490 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189551 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189612 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189673 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189734 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189795 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189856 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 189917 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 189978 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190039 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190100 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190161 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190222 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190283 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190344 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190405 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190466 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190527 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190588 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190649 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190710 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190771 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190832 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190893 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 190954 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191015 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191076 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191137 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191198 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191259 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191320 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191381 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191442 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191503 29 93.1 0 A...........T................ | A [191529] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //