Array 1 31960-33379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHEP02000007.1 Bordetella pseudohinzii strain 8-296-03 SAMN02263900_NODE_7.ctg_1236445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31960 36 100.0 30 .................................... ATGTTTATCGTGATCACGATTTTGTCGTGG 32026 36 100.0 29 .................................... GCGGTGGTTCTGCGCCGATTAACATTAAT 32091 36 100.0 30 .................................... AGTGATCTTCTTCGTAACATAACGCGCTAC 32157 36 100.0 30 .................................... ACTAGCGTTGTAGTTATGTTGCGTGATTGC 32223 36 100.0 30 .................................... CGCATCGACGGACCGCAGATCAGATCATCG 32289 36 100.0 30 .................................... AAGTCGAAGTACAGCATGTTGAGGGACTAG 32355 36 100.0 29 .................................... GTATGCCGTATTCGATGCGCCCCCAGCAG 32420 36 100.0 30 .................................... TCTTTCACGTCCTTTCCTTGAGAGAGTCCA 32486 36 100.0 30 .................................... GGTCGTCACGCCTTCCCGACCGCCGCTGTC 32552 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 32618 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 32684 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 32750 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 32816 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 32882 36 100.0 30 .................................... TATTTGGATTGGTGCAAGTTCTATCTGGAA 32948 36 100.0 30 .................................... TTGCCCGTCATGGACGTGACGGCGCCGTCG 33014 36 100.0 30 .................................... ATCCATCCGAATTCACTACGGGCCAAGCTG 33080 36 100.0 30 .................................... ATAGCGATGCAGGGACGGCGCGCGTTGACT 33146 36 97.2 30 ......................A............. GGCCGCTCCAGTACCACTCGTGACGAAACT 33212 36 100.0 30 .................................... TCAGATGCACTGCTACATCCGCCAGTCCGA 33278 36 100.0 30 .................................... CCTACGCGGGTTCGACTCCCGCAGCCCGCT 33344 36 91.7 0 ..............................T.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAATTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC # Right flank : AAAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //