Array 1 30253-31674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAMT010000007.1 Neisseria meningitidis strain 40668 NODE_7_length_83560_cov_40.506920, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30253 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 30319 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 30385 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 30451 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 30517 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 30583 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 30649 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 30715 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 30781 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 30847 36 100.0 30 .................................... CTTCGATGGCTTCGACGTTGAAGCGTTGGT 30913 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 30979 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 31045 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 31111 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 31177 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 31243 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 31309 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 31375 36 100.0 30 .................................... CAAAACTTTTAGGGGGGGTCGGAAAAATAC 31441 36 100.0 30 .................................... CCCTAGTCTGCCATAACTTAATTTAGTACG 31507 36 100.0 30 .................................... TCGAAGAAACCGACTTTGAAGGCATCTTCG 31573 36 100.0 30 .................................... GGACGGCGGCGGGCAGGCTTTGCAATACGC 31639 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //