Array 1 25095-23479 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000024.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 25094 30 96.7 31 .............................C AGAAATCGACGTTTTCGGGATTCCCGGCCAT 25033 30 96.7 31 .............................T CACCAGGACGCCGACGGCGCAGAGGTCATCA 24972 30 96.7 31 .............................A CGTCGTTCGTCTTCATCTTCCAGCAGAAGAC 24911 30 96.7 31 .............................T GGTGCTGGTCGATCTCCAACAGCGTGTGCAG 24850 30 100.0 31 .............................. TGGGTGGGTTCCACGAACTCACCATCGGAGA 24789 30 96.7 31 .............................C GTAGGACGGTTTGGGCGGCGGGGTCCTTGTT 24728 30 96.7 31 .............................T CCCACGGCACCGGCCGCAGGGTCGAACTCGT 24667 30 96.7 31 .............................C GCCCTGATGCACTCCTCCCAGTACTGGGCCT 24606 30 96.7 31 .............................A CGGCACCGAGGTCTCCGATACGACCCTGGCC 24545 30 96.7 31 .............................T TGCGGTAGACCCCGCCCGAGGAGGGGCCCCA 24484 30 100.0 31 .............................. TGGGACCTGGCCGTCGACACCCTGCCCCAGG 24423 30 96.7 31 .............................C GCAACGTGTACCCGTGCGCGCCGCCCGCACC 24362 30 96.7 31 .......T...................... TCACCAGTGATGAGTTCCTGCTGGAACTTCG 24301 30 100.0 31 .............................. CCACGGGCACCATCGCGGCGGCCCCGAGCTG 24240 30 100.0 31 .............................. GCTATTGGCATCCCACCGAAATTTCTTCCGG 24179 30 100.0 31 .............................. TGACCGTCTCCTCGGCGGGCAGCTCGGCGGC 24118 30 96.7 31 .............................A CAAGGAGGGGTTTCCGCTGGTCACGGCGGGA 24057 30 100.0 31 .............................. CTGGGGAGGGCTCTCGGGACCCTGTCAGGTT 23996 30 96.7 31 .............................A TCTTCGCCCGCAACCTCGCCTCCAAGGTGAT 23935 30 100.0 31 .............................. GGTGGCGGGTGAGTTCCCCCGCCGCCTCGGC 23874 30 100.0 31 .............................. CGTTCACGACCTGGAAGGGCATCGAAGCCAC 23813 30 100.0 31 .............................. CTGGGGAGGGCTCTCGGGACCCTGTCAGGTT 23752 30 96.7 31 .............................C GCCCTGCACAAGCAGGTCCGCGAGATCATCA 23691 30 96.7 31 .............................C CGTGCTCGGACGCGACCTCCAGGTCCCTCAG 23630 30 96.7 31 .............................A ACTTCACCGACGTTGATGGGGCGATGGCCAG 23569 30 96.7 31 .............................T TCTCCAGAAAGGCGACGCTCTCCCGTGGGGA 23508 30 86.7 0 ........................A.TG.T | ========== ====== ====== ====== ============================== =============================== ================== 27 30 97.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGTGGCGAGCTGCTGGAATCGGGTTACAGCTACACCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGCCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATCTCGGCCGGGGTGTTCATAGGCAACCCGTCGCGTCGGATCCGGGAAGTGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCACCGATTCCGAGCAGGGGTTCACCTTCGAGACCTTCGAACACCACTGGGAGCCGGTGGACCACGAGGGGCTTACCCTGATGCACCGCCCCAAGAAGGTGGTGGAGGAGGACAGGCGCCCGCCGAAGAAAGGGTGGAGCAAGGCCTCGAAGAGACGGCGCTTTGGTGGGCGATGAGTTGTTTGGGATTTATGTGGCCTGTGGTGCGCGTGTCCGTCTTTGAAGAAGTTGGAAAAACGGCCGCTTGCCATTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGAGCGGTTGAGGCCCGAACTGACAAGCTTCGTCGTGGGTCTGGGCGCTCGGTACTGCTACGGCTGACGCGCCTTGAGGGTGTTGAGGAGGCCGGTCCACTCAGGGGTACCGAAGGCGAGGCGCCCGAGTTCCCGGTTCTGGGTGTCGCGAACCAACACGCTCTGCCCCTCAGCGACCTCAACGCACTCGCCACCGTTGGTGCTGTAGCTGCTCTTGTGCCAGGTGCGGGGGTGCGGCGCGGTCATTTCCGTGTCTCCTCTTCTTTGCAGGGGCCTACTGATCCTCGTCCAGGAGCCCACGTACGAAGAGGACCGACTCATCGGGTTTGAGCGCTTTGCCCAGCAGGCTCCCGAACATCAGCGTATAGCGGCGGACTTCTTCAGGGTTCTCCGGAACGAGTCCACTACCGGCCTGTTCGAGGTAGACCACGTCGGGGTCGGCCTGTTCCGGGAACTCCAGGAGATAGAACGGGCCGTCCATCCCGGCATGGGCCCCGTGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35868-34557 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000024.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35867 29 100.0 32 ............................. AGGAGCACACCCCCGGCTTCCAGGCCGGAAGG 35806 29 100.0 32 ............................. TGCCTGTCGGCGGCGGCAAGAGCTTGGGTGTA 35745 29 100.0 32 ............................. AAACCCCTGAGAACATGAAGCCCGGAGAGCCA 35684 29 100.0 32 ............................. GGCGCCCGCGAAAGCTACGGCGAGGACACACT 35623 29 100.0 32 ............................. GGGTCCGGGGCCGGGGGCGGCGTGGGTGTGGT 35562 29 100.0 32 ............................. GAGGTCGTGGAGTTCTACATCGGCCCCGTCGA 35501 29 100.0 32 ............................. TGACGTCGCGGTCGTTGGCCAGGTCCAGGCCT 35440 29 100.0 32 ............................. AGGTCTTCGAGGAACGCCACGTTCGGCGCGGC 35379 29 100.0 32 ............................. GACAGCAGCGAGCCGATCGACGTGAACCCCAT 35318 29 100.0 32 ............................. GAGTGGCGCGCGCTGCTGGGAGGGCTGGGCGG 35257 29 100.0 32 ............................. CACCTAGGGCCGCCTCGTCCGCGAACACGAGG 35196 29 100.0 32 ............................. AAGATGCGCGAGGAGTAGCCCGCCGTCCCCGC 35135 29 100.0 32 ............................. GCGGTGCGCGAGTTGCGGCTGTACCTCATGGA 35074 29 100.0 32 ............................. GGCATCATCGACCCCGCCGACCTGGAGGTGCA 35013 29 100.0 32 ............................. AGCTGGCGGCCGTCGTCGTCCAGACCCGCGAC 34952 29 96.6 32 ..............C.............. CACGCCAGCGACGCCAGCAGTCTCGCGACGGG 34891 29 96.6 32 ..............C.............. CCCTCGGCCGCTTCACCGAGCACGGGCAACAG 34830 29 96.6 32 ..............C.............. TGACGCGGTCTTCACTACCAAGCGACTCCGAG 34769 29 96.6 32 ..............C.............. ATCGTGGGCCAGGCGACGGTGCGCTCCGGGGT 34708 29 96.6 32 ..............C.............. TGAGTGACGAACCTTATAGTGAACCTTGGAAT 34647 29 96.6 32 ..............C.............. TTCTTCAAGGTCTTGTAGGAGGGCACGAGCGA 34586 29 93.1 0 ...T........................G | T [34561] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CGGAAACTTCATCCTGCTCACGCTGGATGAGTTGACGGTACTCGTGACCGTCACCGATACCACGAGTCTTTTTTGGGATGATCAGGAATCGCTGGAGCGCTACTCCGGTGTGTTCGAACGCCTGCTTGCGGACGCCTGGCGGCCCGCGCAGACGCTCACCTTCCTGGATGGTGTTGCCAGAGCCTTGGAGAAGGAGTAGCAATGAAGCCGCGCCCCGCTAAGTGGTTCAAGTCAAGCTACAGCGGAACCTCGTCCAACTGTGTCGAGGTTGCTGACTTGAACGAAGGAGCGGCGATGCGGGACACCAAGCATCGGGAAGCGGGGCCCTTGCTTTCCCCAGTATTGAGTGGCATGTCTTCCTTGAGAGCGTCAAGACGGACAGGTAGCGCTAGCTCCGGATTGGCAATTGAGTTATTTTTGGGTTTTTGGGGCTTATGTCTGAATTTCGAGAAGTTGGAAAATTGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCGTGGACT # Right flank : GCGCACAGAGCACGTGGTTTGCACGTGCGGGCGGGTTCCTCATGGCCGGATGCGGTCAGAGCGGATATGGGCGTTTGGCTGCGGAAGGTCGCTGAGCTCCTGTTCAATGTCGGCCATGACAGACGAGGGTCGCCCCCAGCCCTGGAAAGACCGCCTCTCCACGGCTGCTCGCCAAATATGGGCCAAGCACGACTTCGACTCCGACGGCTGGTTGCCCCTGTGGCGTCACATGGCCGACAGCGCCGCCGTCGCGAGCAAGCTGTGGGACGAGTGGCTCCCCTCCCAGGTACGTGACCAGATCAGCCACGTACTCCCCGAGGGCGAAGACGAAGCCCGAACCCTCGCCATCTGGCTGGCCGCCACTCACGACATCGGCAAAGCCACCCCTGCCTTCGCCTGTCAGGTCGAACAACTCGCCGAGCGCATGCGCCACGAAGGCCTGGAGATGCCCCTCCAGAAACAGATGGCCGACCGCCAACGCGCGCCCCACGGCCTGGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47838-46832 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000024.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 47837 30 100.0 31 .............................. GCTTCGCAACGCACCCCAGACCCAGCGCCGA 47776 30 96.7 31 .............................C ACCCGGACTCGCGGAAATGCCACGCGACGGT 47715 30 100.0 31 .............................. GCCAGGACGACGAAGGCGCCGCCGACCAGAA 47654 30 96.7 31 .............................C GACGCACCCCGCGCCCTGTACGACGCGTGGG 47593 30 96.7 31 .............................A ACCAGCGTGGCCGAAGCAACTCCAGCCCCCC 47532 30 96.7 31 .............................C AGATGATCTAGACATCATTCTTAGCTACTAC 47471 30 96.7 31 .............................T CGGGGTTGTCGGCCAGCCACTGGTCGCGCTT 47410 30 96.7 31 .............................C AGTGGTCGCTGTTCAACAGGCACGGTCGTAC 47349 30 100.0 31 .............................. GGTCGTTGGTCAGGGATCGGCACGGGCCCGG 47288 30 100.0 31 .............................. GGCCACCCATGCCCGGATGCAGTCCGACACG 47227 30 100.0 31 .............................. GAGCGGTTGCGGCGCCAGCGCGGCTACCCGG 47166 30 96.7 31 .............................A AGCCAGAGACCCCCGCAGCCTCAGAGCCCGT 47105 30 100.0 31 .............................. GCACGACGGTACGGACGATCGACGCAAGCAT 47044 30 100.0 31 .............................. GCCCACGTCGCCGAGAGGTTGCGGGACCGGG 46983 30 100.0 31 .............................. ACATCAGCCCGCTGGTCGCGGTCACGCTCGC 46922 30 100.0 31 .............................. TGAGCCGCCCTTTGGCGGGGTCGACCCAGTC 46861 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 17 30 98.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AAACCAGGGCGGACAGTGCCAATGGAGTAGAAAAGGAAAGACCGGGACCGGTGGCCACGCGAGAACTGAGTCGATCGCCCCTGGGACACTCCTGGGGCAAGGAGGGGCTGTTCGTCGAGTTCGTCACCAGCATGATCCTCTGGAAGGGCGACGTCGGTATGCGTCACGGACGAAGTCCTGGCCACGTCTGGGCAGTGCGCCACAGGGGGCGGTCAGCGCCCAAAGGAGAATGTGCGGGCACGGTCGTGGCCGTGCAACTCCCAGGCCGGGCGTTCACGAGTGGATTCGTGCCCCCAGTGGCCGTCAAGCACCAGAAGTCGGCGTCCTGGCCTTTCACGACGGCATGTGGTGTGCTTTCCTCGGGGGTACCAAACAGAGCGAATGCTATTAGGTCATAACGGGGTGTTTGGGTGTCAGTGGGGCTTATGGTATTTGTGTCTGATTTTCGAGAAGTTGGAAAATCGGCCGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGGCGGTTGAGGTGGCCGCGCGACTGATGCTGTGCGGTTTCGGCAGGGTCCACAGGAGCGGGGGCGGGCACACCGGGGCACGCGGAGTCCGTCGGTCCCGCCCTGGCTCCGCTGGTGCCCCGCCCTTGGTTCGGTGCGTGTCCGCTCACCGCGCATCATCTCCCCAGGTGCGCCGGGTGGTGTGCTGATCCCGAGTGGTCATGACCGCTCGGGTGGAACCTCCTTCGTGTCGAGGCGAACGCCGCACTTCGGTCTGTCCGTTTCTCTCCGTAGCAGCACCTCAGAAGGAAAATAATGCCGCATAGCGCTCCTACCTGCGGTGATGATGAACGTGGACGTTTTCTGCCCTCCGAGTTCCGGGTACGCGTGGTTACTGACCGCGAACATCGACGAGGGGACGCGGACATGGCGCACGGCATCGCGAGAAGGTGCGAGCTCGACCGGCTGAGGGGATTCCACGAGGAAGGCCGGACGTGAACGACCGCACCACCCCGGCCCTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69552-67814 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000028.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 69551 30 96.7 31 .............................C AGAAATCGACGTTTTCGGGATTCCCGGCCAT 69490 30 96.7 31 .............................T CACCAGGACGCCGACGGCGCAGAGGTCATCA 69429 30 96.7 31 .............................A CGTCGTTCGTCTTCATCTTCCAGCAGAAGAC 69368 30 96.7 31 .............................T GGTGCTGGTCGATCTCCAACAGCGTGTGCAG 69307 30 100.0 31 .............................. TGGGTGGGTTCCACGAACTCACCATCGGAGA 69246 30 96.7 31 .............................C GTAGGACGGTTTGGGCGGCGGGGTCCTTGTT 69185 30 96.7 31 .............................T CCCACGGCACCGGCCGCAGGGTCGAACTCGT 69124 30 96.7 31 .............................C GCCCTGATGCACTCCTCCCAGTACTGGGCCT 69063 30 96.7 31 .............................A CGGCACCGAGGTCTCCGATACGACCCTGGCC 69002 30 96.7 31 .............................T TGCGGTAGACCCCGCCCGAGGAGGGGCCCCA 68941 30 100.0 31 .............................. TGGGACCTGGCCGTCGACACCCTGCCCCAGG 68880 30 96.7 31 .............................C GCAACGTGTACCCGTGCGCGCCGCCCGCACC 68819 30 96.7 31 .......T...................... TCACCAGTGATGAGTTCCTGCTGGAACTTCG 68758 30 100.0 31 .............................. CCACGGGCACCATCGCGGCGGCCCCGAGCTG 68697 30 100.0 31 .............................. GCTATTGGCATCCCACCGAAATTTCTTCCGG 68636 30 100.0 31 .............................. TGACCGTCTCCTCGGCGGGCAGCTCGGCGGC 68575 30 96.7 31 .............................A CAAGGAGGGGTTTCCGCTGGTCACGGCGGGA 68514 30 100.0 31 .............................. CTGGGGAGGGCTCTCGGGACCCTGTCAGGTT 68453 30 96.7 31 .............................A TCTTCGCCCGCAACCTCGCCTCCAAGGTGAT 68392 30 100.0 31 .............................. GGTGGCGGGTGAGTTCCCCCGCCGCCTCGGC 68331 30 100.0 31 .............................. CGTTCACGACCTGGAAGGGCATCGAAGCCAC 68270 30 100.0 31 .............................. CGTTCACGACCTGGAAGGGCATCGAAGCCAC 68209 30 100.0 31 .............................. CTGGGGAGGGCTCTCGGGACCCTGTCAGGTT 68148 30 96.7 31 .............................C GCCCTGCACAAGCAGGTCCGCGAGATCATCA 68087 30 96.7 31 .............................C GCCCTGCACAAGCAGGTCCGCGAGATCATCA 68026 30 96.7 31 .............................C CGTGCTCGGACGCGACCTCCAGGTCCCTCAG 67965 30 96.7 31 .............................A ACTTCACCGACGTTGATGGGGCGATGGCCAG 67904 30 96.7 31 .............................T TCTCCAGAAAGGCGACGCTCTCCCGTGGGGA 67843 30 86.7 0 ........................A.TG.T | ========== ====== ====== ====== ============================== =============================== ================== 29 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCGTGGCGAGCTGCTGGAATCGGGTTACAGCTACACCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGCCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATCTCGGCCGGGGTGTTCATAGGCAACCCGTCGCGTCGGATCCGGGAAGTGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCACCGATTCCGAGCAGGGGTTCACCTTCGAGACCTTCGAACACCACTGGGAGCCGGTGGACCACGAGGGGCTTACCCTGATGCACCGCCCCAAGAAGGTGGTGGAGGAGGACAGGCGCCCGCCGAAGAAAGGGTGGAGCAAGGCCTCGAAGAGACGGCGCTTTGGTGGGCGATGAGTTGTTTGGGATTTATGTGGCCTGTGGTGCGCGTGTCCGTCTTTGAAGAAGTTGGAAAAACGGCCGCTTGCCATTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGAGCGGTTGAGGCCCGAACTGACAAGCTTCGTCGTGGGTCTGGGCGCTCGGTACTGCTACGGCTGACGCGCCTTGAGGGTGTTGAGGAGGCCGGTCCACTCAGGGGTACCGAAGGCGAGGCGCCCGAGTTCCCGGTTCTGGGTGTCGCGAACCAACACGCTCTGCCCCTCAGCGACCTCAACGCACTCGCCACCGTTGGTGCTGTAGCTGCTCTTGTGCCAGGTGCGGGGGTGCGGCGCGGTCATTTCCGTGTCTCCTCTTCTTTGCAGGGGCCTACTGATCCTCGTCCAGGAGCCCACGTACGAAGAGGACCGACTCATCGGGTTTGAGCGCTTTGCCCAGCAGGCTCCCGAACATCAGCGTATAGCGGCGGACTTCTTCAGGGTTCTCCGGAACGAGTCCACTACCGGCCTGTTCGAGGTAGACCACGTCGGGGTCGGCCTGTTCCGGGAACTCCAGGAGATAGAACGGGCCGTCCATCCCGGCATGGGCCCCGTGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80325-79014 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000028.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80324 29 100.0 32 ............................. AGGAGCACACCCCCGGCTTCCAGGCCGGAAGG 80263 29 100.0 32 ............................. TGCCTGTCGGCGGCGGCAAGAGCTTGGGTGTA 80202 29 100.0 32 ............................. AAACCCCTGAGAACATGAAGCCCGGAGAGCCA 80141 29 100.0 32 ............................. GGCGCCCGCGAAAGCTACGGCGAGGACACACT 80080 29 100.0 32 ............................. GGGTCCGGGGCCGGGGGCGGCGTGGGTGTGGT 80019 29 100.0 32 ............................. GAGGTCGTGGAGTTCTACATCGGCCCCGTCGA 79958 29 100.0 32 ............................. TGACGTCGCGGTCGTTGGCCAGGTCCAGGCCT 79897 29 100.0 32 ............................. AGGTCTTCGAGGAACGCCACGTTCGGCGCGGC 79836 29 100.0 32 ............................. GACAGCAGCGAGCCGATCGACGTGAACCCCAT 79775 29 100.0 32 ............................. GAGTGGCGCGCGCTGCTGGGAGGGCTGGGCGG 79714 29 100.0 32 ............................. CACCTAGGGCCGCCTCGTCCGCGAACACGAGG 79653 29 100.0 32 ............................. AAGATGCGCGAGGAGTAGCCCGCCGTCCCCGC 79592 29 100.0 32 ............................. GCGGTGCGCGAGTTGCGGCTGTACCTCATGGA 79531 29 100.0 32 ............................. GGCATCATCGACCCCGCCGACCTGGAGGTGCA 79470 29 100.0 32 ............................. AGCTGGCGGCCGTCGTCGTCCAGACCCGCGAC 79409 29 96.6 32 ..............C.............. CACGCCAGCGACGCCAGCAGTCTCGCGACGGG 79348 29 96.6 32 ..............C.............. CCCTCGGCCGCTTCACCGAGCACGGGCAACAG 79287 29 96.6 32 ..............C.............. TGACGCGGTCTTCACTACCAAGCGACTCCGAG 79226 29 96.6 32 ..............C.............. ATCGTGGGCCAGGCGACGGTGCGCTCCGGGGT 79165 29 96.6 32 ..............C.............. TGAGTGACGAACCTTATAGTGAACCTTGGAAT 79104 29 96.6 32 ..............C.............. TTCTTCAAGGTCTTGTAGGAGGGCACGAGCGA 79043 29 93.1 0 ...T........................G | T [79018] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CGGAAACTTCATCCTGCTCACGCTGGATGAGTTGACGGTACTCGTGACCGTCACCGATACCACGAGTCTTTTTTGGGATGATCAGGAATCGCTGGAGCGCTACTCCGGTGTGTTCGAACGCCTGCTTGCGGACGCCTGGCGGCCCGCGCAGACGCTCACCTTCCTGGATGGTGTTGCCAGAGCCTTGGAGAAGGAGTAGCAATGAAGCCGCGCCCCGCTAAGTGGTTCAAGTCAAGCTACAGCGGAACCTCGTCCAACTGTGTCGAGGTTGCTGACTTGAACGAAGGAGCGGCGATGCGGGACACCAAGCATCGGGAAGCGGGGCCCTTGCTTTCCCCAGTATTGAGTGGCATGTCTTCCTTGAGAGCGTCAAGACGGACAGGTAGCGCTAGCTCCGGATTGGCAATTGAGTTATTTTTGGGTTTTTGGGGCTTATGTCTGAATTTCGAGAAGTTGGAAAATTGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCGTGGACT # Right flank : GCGCACAGAGCACGTGGTTTGCACGTGCGGGCGGGTTCCTCATGGCCGGATGCGGTCAGAGCGGATATGGGCGTTTGGCTGCGGAAGGTCGCTGAGCTCCTGTTCAATGTCGGCCATGACAGACGAGGGTCGCCCCCAGCCCTGGAAAGACCGCCTCTCCACGGCTGCTCGCCAAATATGGGCCAAGCACGACTTCGACTCCGACGGCTGGTTGCCCCTGTGGCGTCACATGGCCGACAGCGCCGCCGTCGCGAGCAAGCTGTGGGACGAGTGGCTCCCCTCCCAGGTACGTGACCAGATCAGCCACGTACTCCCCGAGGGCGAAGACGAAGCCCGAACCCTCGCCATCTGGCTGGCCGCCACTCACGACATCGGCAAAGCCACCCCTGCCTTCGCCTGTCAGGTCGAACAACTCGCCGAGCGCATGCGCCACGAAGGCCTGGAGATGCCCCTCCAGAAACAGATGGCCGACCGCCAACGCGCGCCCCACGGCCTGGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 91685-91289 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000028.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 91684 30 100.0 31 .............................. GAGCGGTTGCGGCGCCAGCGCGGCTACCCGG 91623 30 96.7 31 .............................A AGCCAGAGACCCCCGCAGCCTCAGAGCCCGT 91562 30 100.0 31 .............................. GCACGACGGTACGGACGATCGACGCAAGCAT 91501 30 100.0 31 .............................. GCCCACGTCGCCGAGAGGTTGCGGGACCGGG 91440 30 100.0 31 .............................. ACATCAGCCCGCTGGTCGCGGTCACGCTCGC 91379 30 100.0 31 .............................. TGAGCCGCCCTTTGGCGGGGTCGACCCAGTC 91318 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 99.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ACAC # Right flank : GGGCGGTTGAGGTGGCCGCGCGACTGATGCTGTGCGGTTTCGGCAGGGTCCACAGGAGCGGGGGCGGGCACACCGGGGCACGCGGAGTCCGTCGGTCCCGCCCTGGCTCCGCTGGTGCCCCGCCCTTGGTTCGGTGCGTGTCCGCTCACCGCGCATCATCTCCCCAGGTGCGCCGGGTGGTGTGCTGATCCCGAGTGGTCATGACCGCTCGGGTGGAACCTCCTTCGTGTCGAGGCGAACGCCGCACTTCGGTCTGTCCGTTTCTCTCCGTAGCAGCACCTCAGAAGGAAAATAATGCCGCATAGCGCTCCTACCTGCGGTGATGATGAACGTGGACGTTTTCTGCCCTCCGAGTTCCGGGTACGCGTGGTTACTGACCGCGAACATCGACGAGGGGACGCGGACATGGCGCACGGCATCGCGAGAAGGTGCGAGCTCGACCGGCTGAGGGGATTCCACGAGGAAGGCCGGACGTGAACGACCGCACCACCCCGGCCCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21824-20451 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVU01000029.1 Nocardiopsis quinghaiensis strain YIM 28A4 contig029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 21823 30 96.7 31 .............................A CCAGGTCCAGGTCTGCCCCGGCGGCGACGAG 21762 30 96.7 31 .............................T TCACCAGCGTGAAGGTGTCGGCCGCAGCCAC 21701 30 100.0 31 .............................. ACTTTTAGACCATGTGGACTACACACCCTGT 21640 30 100.0 31 .............................. CTGGGGAGGTCTGCCGGGACCCTGTCAGGTT 21579 30 96.7 31 .............................A GTCCCGCGTGCGTCGAGTACCACATCGCGCG 21518 30 96.7 31 .............................C CGAAGGTGATGGATGCCCAGCTTGGTCACCT 21457 30 100.0 31 .............................. ATCCGCGCATACACCGACACCGCCAAGCTGT 21396 30 96.7 31 .............................T GGGAGGCGGAGACGGGCAGGACGCGGGTCTT 21335 30 96.7 31 .............................A GCGGGCCACGGGGTGCGGCCGTCGTTCTCCG 21274 30 96.7 31 .............................T TGGATGGGGTGCAGGCGGTGTGCGGCGGGTG 21213 30 100.0 31 .............................. ATCCACGGTCCTGTACAAAAACATCCCTAGG 21152 30 96.7 31 .............................A CCACCCCCGCCCCAGCAACCAGCGCAGCGGC 21091 30 100.0 31 .............................. CAGGCAAGTCCACGTCCCGGTAGGAGTCCTC 21030 30 100.0 31 .............................. ATCCACGGTCCTGTACAAAAACATCCCTAGG 20969 30 96.7 31 .............................C TGCGCAACGACGACCTGACCGATGTGCGCCT 20908 30 96.7 31 .............................A TCTGCGGTGTGATCGTGGTCCACCCCGGGTT 20847 30 96.7 31 .............................C TCATGGACGAGCAGGGCCTGACCGTGGAGCA 20786 30 96.7 31 .............................C GAGGCCAACTACAAGACCTGCATCGAGGGCC 20725 30 100.0 31 .............................. CTACCAGACAAAGGTGTGCTTGGCAATACAT 20664 30 96.7 31 .............................A GGCCCAACGAGGCCATCACGATGTTCTTGAG 20603 30 90.0 31 ............TG...............A ATGGGGCGGGACACCGCCCCCGACGGGCCCC 20542 30 96.7 31 .............................T GGCTGTTCGTTTCGTCCCACGGCCGCCCCGA 20481 30 100.0 0 .............................. | T [20455] ========== ====== ====== ====== ============================== =============================== ================== 23 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GATCAGTGACGCATCCTATCCCCGCCCCGCGACCCTCCAGTGACCCGCTGTACCGACCGCTCCCGCCGCTGCCCCGACGCCGCCCCCTGGTGGGCCCGTTCTGCCCGGCGTGCGAGCACCCCTCCTGCCGCCGGCGCCGCGCGGCACGCCTGCCCCGCCTGGGCGGCCAGCGCTCCGAGTTCGCCCGCGAACACACCCGCGCCGCCGCTCTCCAGCGGCACAACCCGCACCTGATCATCTGGTTCGGTGAGCAGACACTGTCCTACTGGGTGGCTTCATCTGCTGGTCTGACCGAGGCCCGGGAATCGGGCGACCTGTTGCTTCTCCTGAATCCGGCGCCCACCTACGCCTGACGGGTGCCGGCAGGGGTATGGCCAAGCCCCTGCCGGTACGCTGCTGCCATGGTTTTCCGAGGGTCACAGGTGCTGCCTGATTTGTCTGTTTTTCGAGAAGTTGGAAAAACGGCCGCTTGCCGCTGGTAAGTTTCCAGGTCAGTGACT # Right flank : GAAGCAGCACTCAGCGGCTCAGCGCATACGGTGCAGCGGCCGGGCCGGATCGGCGGCCAGGGAGCCCAACAGCCGCAGCGCCCGGAAATCAGGGCTGTCCGGCTCGGCCCGGTACACGACCAGCTGGAGTCCGTCCTGCCCCCGCACGTCGAACACGTGTGAGGACAGGGTCAGCCCACCCACCGCGCTGTGCCGGAACTCCTTGCCCTCGTGGGACTTGCCGCGCACCTCGTGCTCCTCCCACAGCTCGCGGAACCGGGAACTGTCCCGGCCCGCCTCCTCCACGAGTTCCAGCACCCGGCGGTCGTGTGGATCATGCCCCAGCGCCAGGCGCAGGCCGGCCACACAAGCCCGTGCGGTTCGCGGCCAGTCGACGAAGAAGACCTCGCCCACCGGGTCCAGGAAGGCCATCCGCACCAGGTTGTCGGCCTCCGCGAAATCGGCGTACAGCGCGTCCGCCAGCGCGTTGGTCGCCAGGAGGTCCAGACGCCGGTCGATGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9547-9211 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703343.1 Nocardiopsis quinghaiensis strain YIM 28A4 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9546 30 96.7 31 .............................C TCTCCACCGGGGAACGCAACGACCTGTACAA 9485 30 100.0 31 .............................. GAGTCAAGGCGTTGGCGAGCTGGCTCGCGCG 9424 30 100.0 31 .............................. CGTCCAACGCGTCCGTAACCTCCGTACGGGT 9363 30 100.0 31 .............................. CGGTGAACGTGACCGGCCAGGTGATGGGGTT 9302 30 96.7 31 .........................C.... GCATCCGTAAGGGCCACGAGGCGGGGACCTC 9241 30 90.0 0 ........T.....T.......A....... | G [9213] ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCAGGGCAGGGGGCCCAACGAGACACCGGTTCGTCGGCTGTGTTCGAAGAAGAGCAGACCGACCTCGGTCACGGCCAGGGCGTGCGCTTGGAGGGGCCGGCCGCCCGGGCGGCGTCCATTCGGTATGGGCGCCTGGGCACTCCGCCGTGCACTTGGACCAGCGTGGTGCCCGCGTGGGTGGCGAACCAGACACTGTCGCGTCCTCCTGGCTCTTCATCTTTTTGGAGAGTAAGGAAACGTAGCCTCCGCGGCCTCCGTGTGTGCCCCGAAAGTGGGCCTGATCTGCGGTGGTGGTGCGGAGGCTGAACTTGAATCCCAGCCTCCGCTAGCCTCCGCCCCCCATGGCTAGCTCGGTTGTCAGGAATGCCTGGTGGGGTGAGGTCCGGATGAGGTATGAAGACACCAGTCGGTTTTGCCTTGAGCCTGTGGGTGAAATGTCTGTTTCTCAAGAAGTTGGAAAATCGGTCGCTTGTCGCTGGTAAGTTCCCACGTCAGTGACT # Right flank : CAGAGAACCCACCGATAACCTTCCGCTTTTCAGTAGGCCATGCTGAATCCAGCAGGGACCACTCTGACCTGCTTCAATAGAAGAACCTGCTTCCTGGCGGCGGAACTTGGACGCGGATTGGACGCGCGGCCCCAGGCGAGCTCTCCCGAGACGGCGAAATCTCAATGGGTTCCCTGCGCAAGAAAAATCCCATGATCACATAAGCGGATGTTTCTCGACTAGTTGACGACCTAAGTTCGAAGACTTGTTCGCACGATCGTGTATCCTTGGCCCCGCTAACTATTTGGGGGAATATTGGCCACTCTGCACCGTGTCGTGAGGTCCGCTTCGGGACTCAACACCATCGCCACACAGGCCCAGCGGTCCGCCCTGGGCAACCTCGGAATGATCAGCGCGCATCGCACCCGCGCCACCTTCCTAAGCGCCGCACTCGCGAACACGCAGCCCCGAGCCTTCGGAATCGGCGCGCACCTCGAAGAGGTCGTGAGGTCCGCTTCGGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12061-11238 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703343.1 Nocardiopsis quinghaiensis strain YIM 28A4 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12060 30 96.7 31 .............................T CGTGGATCTCCACGACCCGGCGTGTGGGGGC 11999 30 100.0 31 .............................. CGGGCACGATGACGTCCGGCGGTGGCGGTGG 11938 30 96.7 31 .............................G CCATCCGGCGCCACTCCGTCGTCCACCCCGT 11877 30 96.7 31 .............................G GTCGTTCGAACGCAGTCCGCACCACTTTTCG 11816 30 96.7 31 .............................A CCGACCACGGTAACCAGGTCTAACAACGTAG 11755 30 100.0 31 .............................. CACCATCCCCGACCCCGCGTTCGGCGGACTG 11694 30 100.0 31 .............................. TTAAGGTTTCCATATGAGCAGCGAAGAGATC 11633 30 100.0 31 .............................. CGATGTGGGCCGACTGGTCAAGGGCGTGGCT 11572 30 96.7 31 .............................G CCATGGTGGCGCCGCGCTGCATGATGTCCTG 11511 30 100.0 31 .............................. CGGAAGGCCCGTTCCACTGGCTCAAGGTCAA 11450 30 96.7 31 ............................T. CGCGCCGCCACGGGAACTGCTCGTGCGGCTC 11389 30 96.7 31 ........T..................... TCGGAACCTAGATACCTAGTCAGCTAGAACC 11328 30 90.0 31 ........T...............AC.... TTGGGGCTGTGTTAGTCAAGCAACGAAGAAG 11267 30 90.0 0 C.........................T..G | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATTCGAACCTGCGCACACGGCTCCGGAGGCCGTGCCGCTGAATCGCTCCTACCTGCGCCAACACCACCTTTGACCATGTCCCTGTCCACCAGCCGACCACAGCGGTCCTGAAAGGACATCTCAGGCGACGTTCCGTAAGCAGGTGGTGACGTCTCGGCTAGCCAGTGGGGGGCTTCCCTCCTGTTGTGCTCTTCATCTTTTTAGAGAGTAAGAAAACGTAGCCTCCACAGCCTCCGCGTGTGCCCCGAAAGTGGGCCTGATCTGCGGTGATGGTGCGGAGGCTGAACCTGAATCCCAGCCTCCGCTAGCCTCCGCAGGCTCCGCAGTAGCCTCCGCCCCCCATGGCTAGCTCGGTTGTCAGGAATGCCTGGTGGGGTGAGGTCCGGATGAGGTATGAAGACACCAGTCGGTTTTGCCTTGAATCTGTGGGTGAAATGTCTGTTTCTCAAGAAGTTGGAAAATCGGTCGCTTGTCACTGGTAAGTTCCCACGTCAGCGACT # Right flank : TGGCCGTGTCTGGCCTGGTGTCGATGCTTTCCTGCTTCCCACTCACATGTGGATGATTTACTTCAACCTTGGAGCTGTATTAGAAGACTTTGGAGTCGAAGATAGGGATTTTATATGGATGTACTGCTGTTGAGTGGATAAGTTAGGGGTACCCTTAAGCCTTGCGGCTCTATGGAGTACAGCAAAGAGGCCCGCAGTGCCTTGACCGGGAAAGTAAGGTGCACTACGGGCTTGGGTGGTTCTAGCTAGGGCTTCTTCTGCCTAGCTAGGACCACCGGTCATCTGTTCGAAGACCTGACGAATCAAAGCGCCAACTCCTCCGCCCAAGACTGGTGCCAGCCAGAAGGGCGCAGTGCGCTTCTTCTTGCGTCGCTTCTGTCGCCTCCGATCAGATTTATGCGTCCTCTTCTTTGACATCTATCTCCCTGGTGGTGTTGCCGGGCCACCATCTGTGTGGCCTGTTTCGGCGAACCCATCGGCGCCCAAGGTTGGGAGCAGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 129907-126643 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703337.1 Nocardiopsis quinghaiensis strain YIM 28A4 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 129906 29 100.0 32 ............................. GACCGGGAGGAGCGCTCCATCCCGGCGCTCAT 129845 29 100.0 32 ............................. TGATTCGACGAAGCGAAGCCCCCACTCCGGTG 129784 29 100.0 32 ............................. AAGACGCGGGTCACGGCATGACGAAGGGCCCC 129723 29 100.0 32 ............................. GTGGTCACGGCGCCGATGCACCCGTCGGGCAG 129662 29 100.0 32 ............................. TTCCATTACCATGCGGTGCTCCGGGATGCGTT 129601 29 96.6 32 ............................A CCACCCGAGGCAGGGCAGGACTGGCGGGTCCC 129540 29 100.0 32 ............................. GTGTCTGCGAACTTGCTGCCGCGATGGTTGTA 129479 29 100.0 32 ............................. CCGGTGTACTTCTCGGCGGCTTCCTGGGTGGG 129418 29 100.0 32 ............................. ATCAACCAGACCCAGCAGAACCTGTCTGCCAC 129357 29 100.0 32 ............................. CATGCGGTGGCGTCAGATCATCACCTTCGGTG 129296 29 100.0 32 ............................. TTCGGCGCAGCCCGGTGACTGACTCCGGTGGC 129235 29 100.0 32 ............................. CTGGGCAACAACTCGGCGGCCACTGAGGCCGA 129174 29 100.0 32 ............................. TCGCCTCCCTCACCCATTGGGATGAGACCCAG 129113 29 100.0 32 ............................. ACCGCCGAGGCGGTCCGTCAGGCACGCGATTC 129052 29 100.0 32 ............................. CCAGGTGGCGGACCCGTCCCAGAAACCACACC 128991 29 100.0 32 ............................. GTGTTCACTCCGGTCAGTGGGCTACAGGGCGC 128930 29 100.0 32 ............................. GTGTTCTACGGTCTCGCCACTGACCCCAGATC 128869 29 100.0 32 ............................. GCCACCAGCGCCGGACGTGCGGGCGCCGAGAA 128808 29 100.0 32 ............................. TCCTTCGCGCCGGTCCAGCAGGCCGTCCAGCA 128747 29 100.0 32 ............................. TGCTTGCGCAGCTCCGGGTCCCGCTCCAGCGC 128686 29 100.0 32 ............................. TCCTCCGAGAGCATCCGCGAGGGGGCGATGGA 128625 29 100.0 32 ............................. GAACACAACCGTGGATGACATCGAGGTGACCG 128564 29 100.0 32 ............................. TTCTCCGACATTCTGTATTCGCTCCCTTTGGG 128503 29 100.0 32 ............................. GCCGTCGCCCGGATCGCCGCCGAGCAGGGCCA 128442 29 100.0 32 ............................. CTAACCCGATGAGCGCCGCGAAGAAGTTCAAC 128381 29 100.0 32 ............................. TTCGTCCGACACCTCGTCGGGGTGACGCATGG 128320 29 100.0 32 ............................. TCCTGCTACGCGGACTGGCCCGTGGTCGGATG 128259 29 100.0 34 ............................. CCGGTGACGGCGCCGGGCTTCTGCGGGTCGGCGT 128196 29 100.0 32 ............................. CCCGCCGCGTGCGAATCCCGGTCGGGTGTGGC 128135 29 100.0 32 ............................. TTGCCCGCCGTGGTCCAGTCGCCCCGTCCGGC 128074 29 100.0 32 ............................. GCCCAGGATCTGGACCTGATCGTGCAGGGCTA 128013 29 100.0 32 ............................. GAGCTGTGTCTCCTCCTGCACGAGCTGGGTGT 127952 29 100.0 32 ............................. TTCTCCACGAAATTCCGGTGCGCCGCGCATGT 127891 29 100.0 32 ............................. TCGCATGGCGGACCCGAACGATCACATGGTCC 127830 29 100.0 32 ............................. CCTCGGACGGCACCGAAATCCCCGTGTGGACG 127769 29 100.0 32 ............................. CCCGGCGGAACCTTCACCCTGCCCGGGGCGAT 127708 29 100.0 32 ............................. CCCAGGCCCGTAGTGGTCCACGACGTGGGTGG 127647 29 100.0 32 ............................. ACTCAGTCGGCGGCAACGCCATGACCGCTGCG 127586 29 96.6 32 A............................ TCTGAGCCCCGAGGTTGCTCGTGGGCATAGGA 127525 29 96.6 32 ...........................T. CGGCGCACCCGGGCGTCGTAGCCGCCGCGCCG 127464 29 100.0 32 ............................. GTGTGCCAGGGCTGGCCCTGGTGGCGGCGGGC 127403 29 100.0 32 ............................. GCGTTGGGCCAGCCAGTCCCACTCGGCCTCAC 127342 29 100.0 32 ............................. GCCCACCGGCCCGGGGGTTCAGCCGAGGTCGC 127281 29 100.0 32 ............................. TTCTCCAGCATCCGCTTGGTGACGGCGGCCTC 127220 29 100.0 32 ............................. TGTCAGCCGAACATCTTGCTCCAGGTCTTCGC 127159 29 100.0 32 ............................. TACGCGGACTACCCCGAGTTCGGCACCGACCC 127098 29 100.0 32 ............................. CCGCTAGGCCACCCACCTAGACCGGTAGGTAA 127037 29 100.0 32 ............................. CATCCCCAAGTTCGAGCACGTCCCCGGAATGC 126976 29 100.0 32 ............................. GCCCGCGTCCGAGGGCTGGAGGAAGAGAACCG 126915 29 100.0 32 ............................. TCATCACCGCCGGACTGCGAGCCCAGCAGCAT 126854 29 100.0 32 ............................. TCCTCCAGGCCGAACCCCTGGGTGATGACCGT 126793 29 100.0 32 ............................. CTAGAGCAAGGAGACGTATACCCGTCGGGTTC 126732 29 96.6 32 ..........................T.. ACGAGATCTAGGTCGAGGGACGCGAGCCGGTC 126671 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================== ================== 54 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CTCCGACGTGTCACCACCCGACCTCGAAGAACAGATCGTGGACCTGTGGGATCCCATCTCTGGTGCGGTTCCCGGAGCGATCAACCACAGCCCCGACGAATGGTGACCACGTGTTTCGTCCATACCGAGGGAGAAGAAGGTGATCCGGTTTGGCGAACATGATCGCCATCAGCGCCACTGCTGTGCCTGACCACCTTCGGGGTGCATTGTCACGATGGTTGTTGGAGGTCACGCCTGAGCTTTATGTGGGTACTGTTTCCGCCCGCGTACGAGACGAGCTGTGGGATGCAACCAGCGCATGTGTGGCTGATGGGGTGGCTGTGCTTCTCTACCCTGCTGACAACGAGCAAGGCTTTGAGGTGCGGACTGCAGGTCAGCGTCGACGTCGTCCAGCCGACTTCGATGGTCTGACGCTAATTGCTTTCGGAGCAATGGCAAGTACATCTGGCCTGGAAGGTAACGAAATAACAACGCCTTCGTAGATGTGCAGGTCAGGAAGT # Right flank : GTTGCGCACAGCCTGTCCGGCCATGTCTTGGCCGCGAGGTTACCCTCAGCAGAGGCGCCGCGAGGGAACATGGGCGAACAGGCTTAGCTCGTACGGGGGTGTTCAGGGTGGCTGCAGAACCAGGACTTGGCCCGTACGAGATTCTTCTCAGAGATCTCGGGGACGACACGATCAACTTCCCTTACCCGATGGCTGACAAGGTGCTGTCCAAGACCATGATCTCGTTCCGAGATGACGCGCACGCCTTCCTCAAGAACAGGGCGGACGAGCTGCTAGAGCAGGAGGATGAGGGAATCATCGCCGAGCAGAGGGAAGGCCATGGGGGCAAGGTGATCATCTTAAAGCCCGAGTGGCACCACAAGCTGGAGCATGCGGTGGGTGTGTGCCACTGCGATGCTTTGGATTGAGACGTAGCGTGCCTCACGTGTGTTCCCTGCGTGAGCAGGGGTGAGGCGCGCATTCAGGACGAGACCTCGCCGGTTGACTTGCAGGCTGCGGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 139484-143357 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703337.1 Nocardiopsis quinghaiensis strain YIM 28A4 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139484 29 100.0 32 ............................. GCCTCGACCGCTTTCAAGGCCGCCCGCAAGGA 139545 29 100.0 32 ............................. GCGGCGGGGGTTTTCCCATGTCAGGGGTGACT 139606 29 100.0 32 ............................. CAGGGCGGGGCAGACGGGCCGTTACGAGAGCC 139667 29 100.0 32 ............................. TGGGGCGGCAGGTGCCCGGCGTCGTAGGCGCA 139728 29 100.0 32 ............................. GACTCCAGGCGGCGACCTACAGCAACTACGCC 139789 29 100.0 32 ............................. ACCACGGGGTGAAGGTGACCGGGGACATGGAC 139850 29 100.0 32 ............................. TCGCGGCACGGGTGGTGCCCCTCATCGAACAT 139911 29 100.0 32 ............................. TCGGATGCGCCAGGTCGGTGAGCAGGCGGGGC 139972 29 100.0 32 ............................. CGGGTGAAGCCGTCGATCGTCAGGGACAGCTT 140033 29 100.0 32 ............................. CAGACCGCCGCCGAGACGGCCCGGCAGGAACT 140094 29 100.0 33 ............................. CCGTTGATGGTGGGCGAGAACCCCGGGGCGGGG 140156 29 100.0 32 ............................. AATCCACCGAACCGGTCGATCGCCTCGTCTTC 140217 29 100.0 33 ............................. CCGTTGATGGTGGGCGAGAACCCCGGGGCGGGG 140279 29 100.0 32 ............................. AATCCACCGAACCGGTCGATCGCCTCGTCTTC 140340 29 100.0 32 ............................. ACGGCGGTGCCGGTGAGGCCGGTGACGGCCAG 140401 29 100.0 32 ............................. TGGGTTGAATTGTCCTGCTTTGCGATGGCATC 140462 29 100.0 32 ............................. CCGAACACGTGCGAGGAACATCGGACCAGGAT 140523 29 100.0 32 ............................. GCACACCGCAGCCGGCAGTGGGAAGTGGACAC 140584 29 100.0 32 ............................. CAGCTCCCCGGGCTCAAGGGGGCCGTCCACTG 140645 29 100.0 32 ............................. TGAGCGCTGGGAGCATGGCGCCACGGACGGAT 140706 29 100.0 32 ............................. TCCTGGGTGAGCGCGTCGGTGAGTTCGGCCTT 140767 29 100.0 32 ............................. CGGTTGCGCGCCCAGTCAGGCCACTGGCCATC 140828 29 100.0 32 ............................. TCTCGTCCGACAAACCAGAGGAACGCTGGTTG 140889 29 96.6 33 ............................A GTCCAGGAGGCGGCGCCGCCGGGGGCGTCGGTG 140951 29 100.0 32 ............................. CTCCCGGGCCTGTTCCTCCTGGCCCTGTTCCA 141012 29 100.0 32 ............................. TCGGAGCTGACCACCGCCGAGGCGGAGGCAGA 141073 29 100.0 32 ............................. TCGGGTGGGGGCTGCGGCCTCGCGGGAGCGGC 141134 29 100.0 32 ............................. TTTCTCCAGCCACGCCGCCCGATCCTCAGGCG 141195 29 100.0 32 ............................. GTCGACAAGGTGTCGTACAGCGTCGCCACTGA 141256 29 100.0 32 ............................. ACCCCGGCGCGCAAGAGCGATGGGTGAGGGTC 141317 29 100.0 32 ............................. GTGCAGATCGTGCACCCGGACTGGGACAAGGA 141378 29 100.0 32 ............................. CCGCGCGGGGGGTGACATGCAGCCCTACCCCG 141439 29 100.0 32 ............................. GTGCAGTCCTGATGGGCACGTCTGGCTGGTCC 141500 29 100.0 32 ............................. CGTCCGCCGATCGCGGCCGGCCTGATGCCCTC 141561 29 100.0 32 ............................. GCGACCACATGGACCGCTACGGCCACACCTGG 141622 29 100.0 32 ............................. GTCCTGGACCGCCTCGTGCGCATCGAAACCAA 141683 29 100.0 32 ............................. TCACTGGAGGTCATCGGAGGTCTCCTTGGGGG 141744 29 100.0 32 ............................. CATGTCGCTTTCCTCCTGTGTGGTGGGGGTAA 141805 29 100.0 32 ............................. ACCCTCGGTGGACTGGCGCGTGGGCTGTTTCG 141866 29 100.0 32 ............................. CATCCCGGGCCGGACCACGGTGGAGGACTCCT 141927 29 100.0 32 ............................. TCGCCGATGAACCAGTTGGCGTGCTCGGCGAT 141988 29 100.0 32 ............................. TCGAACGCGTTCTCGGCGTCCTTCCCCATGGC 142049 29 100.0 32 ............................. AGGCCGGCGACGTAAATGACCACTGTCATTGC 142110 29 100.0 32 ............................. CCCGCGGAGTCCATCGCGATCCCGGCGACGGC 142171 29 100.0 32 ............................. TCCTGGCCGTGCACCCCCGCCATCGGGTGGGG 142232 29 100.0 32 ............................. GGGATGCCCGCGGCGTCGTAGGCCCGCCGTGC 142293 29 100.0 32 ............................. TCGATGCCCACGACCACGACGTCTTCGCACAT 142354 29 100.0 32 ............................. TCCCGACTCGACACGCTGGAAGCCGTTCAGGG 142415 29 100.0 32 ............................. CACTTCTACGCGTTCACCCTGTTCTTCCTGGC 142476 29 100.0 32 ............................. CCTCCCCAGGCCTTCGCACAGGGGGTGGGGAC 142537 29 100.0 32 ............................. ACCGGCAAGGGGCCGTGGTCGGCGGCCATGAC 142598 29 100.0 32 ............................. GCGGGTGGTACGCCTGCGGACCGTGCGCGGGG 142659 29 100.0 32 ............................. AGCGCGGCCGAGGCGACTTCACCGGGTACATC 142720 29 100.0 32 ............................. GGCCTGCCACCCGCGCAGCCCGTGACCCCCGA 142781 29 100.0 32 ............................. AAGCGGTTCCTCGTCGAGGAGCGCGTCGAAGT 142842 29 100.0 32 ............................. TCATCGACATCCACCTCACGGAAGGGGCGGCC 142903 29 100.0 32 ............................. ATGGCGCCGGCTTTCCCTCGGCATGCGGCTTG 142964 29 100.0 32 ............................. CGGATCACTCTTCCTGCGAGCAGCGCGATGGT 143025 29 96.6 32 .................A........... ACCGCCTTCACGGTGATGATGGCTGAGGCCCT 143086 29 100.0 32 ............................. TTCTCCCAGTACGTGGAACTGCACGGATGGAA 143147 29 100.0 32 ............................. CCGGTCATTGACCTGTACTTCGCCCGGTACGA 143208 29 100.0 33 ............................. GAGGACGGCAGTGTGGCTGTTGGCATCCACGAC 143270 28 75.9 32 ....-....A.A...A..T...C..C... GTCAACCTCGGCCTGGGCAAACGCCTCGCAGC 143330 28 75.9 0 .....-....T.T....A..AAC...... | ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.1 32 GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : TGGGATAGGAGCGCGTACTGATTGGGGTCTTTTTCCTGGAAGAGCGGGCTGGCCTTGCCGATGTCGTGGAGCCCTGCCCAAAAACTCACCAGGCTGCGGCACGAGGATCGGCTCAGCCCGATCTGATGTGAGATGCGCTCCTGAGCCCGGTCATCGAGCAGGATGTCCCACAGCGCTCCAGCTACGGCCGCTACATCACTCAGGTGGCAGATGAGCGGGTAGGGAGCCGGAAGGCCCTTGCTTTTTCCCCACATCAGGACATCTGGACGTGTATGCACTAAAATGTCCTTTTTCATGGATGGTTAGCTGAAGTCTGTGTCCCATCTCAGGGTTAGCATCGGGAACTGACATTCCAGGCTGGCCTGATGCAGCCCGAGCACGATACTTCGACAACAGAAGGTGAGAACACACAGATGGGACATGGGCGGGACCTCCCTCGACCTGAAACCATTTCAGGTCACAAAATTGCAACGCCCCATTAAAAGCCCAGTTCAGGAAGT # Right flank : GACGACCAGCTTCTCGGACTGTGCACCCGCACCCGGGCGGAAGCGGCCGACCTTACTCACCAGATTGGAGGTACTGGAACCGGGCGTGCCCTCCTATCCCCGATGGCGGCCCCGCGCGGGCAGGTCTTCACCAGCCACGACGCCTCCCAAATCGCCACAGTGGCCCGCACACCCTGCACCAAAGCCCCCTTCGTGCCAGTTCTCGACACGGGCCCTCGGGCATGATGAGCCGCATCGGATCCGTTGGAGAACTCTGGTGTGCCCTGCGGGTCCCTGCCTAAAGCACCTCACGTATCCACGAGTAGGGTCCTTACCCCGCTGTTTTCGGGATTCCTCTCAGGTAGATCAGCATGAGTGTCCTGACGTTGCCCTTGTTGCTTGACCAGGCGCCCCCAGCGTGGTTTGCGGCCGAAGTGCGCCGCGATCTCCCGGCCACTCGGTAGCTCACCCGTTTCCCGTTGCCGTTCCAGGGCCCATCGCCATGCCCTGGCCTGGAACGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //