Array 1 40318-39952 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI258974.1 Porphyromonas gingivalis F0568 Scaffold847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 40317 36 100.0 30 .................................... GCCGTAGAATTTCACTTCTTCTCTTTTCTT 40251 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 40184 36 100.0 30 .................................... TATAAACTAACTGAAGTTACAATAGATACT 40118 36 100.0 29 .................................... ACAGGTAACTTAATCCCGATAGATTGTCC 40053 36 100.0 30 .................................... TATAAACTAACTGAAGTTACAATAGATACT 39987 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCTGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCGACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 16396-15388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI258943.1 Porphyromonas gingivalis F0568 Scaffold611, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16395 30 100.0 36 .............................. ATCCAGCCACGCTTTCAATACAAGATCTTCATCCGA 16329 30 100.0 35 .............................. AAGAGTTCAAAAAAAGATTCGAGGGAGAAAAGGGT 16264 30 100.0 35 .............................. GACACGGGTTATACGTAGAGCCTCTTCGAGATTTT 16199 30 100.0 34 .............................. GTCCGCCTCTGCTTCGATTCTCGTATAAGAATCA 16135 30 100.0 36 .............................. ACTTCCACGAGAAGCCTACCTCAGTTCCTTCAGCCT 16069 30 100.0 34 .............................. TTTAATGAGCTACACTCCAATATAGAGATAGAAG 16005 30 100.0 35 .............................. TAGAGGGTCTTCTACTTCTCCACTAGTAAGACTAC 15940 30 100.0 35 .............................. TTGAACAAACTCTCCGTCCTCTTCTATCTCTATAT 15875 30 100.0 36 .............................. GAAGTTTATTATGCCACTTAGTTTATCTTGAATTTG 15809 30 100.0 36 .............................. CATGTAAGGAGTGCTATTATTCCCCACGACTGAAAC 15743 30 100.0 35 .............................. AGCCCAGCCCCACTCAAAAGTAACTCCAGAATTAA 15678 30 100.0 36 .............................. ATCCAGCCACGCTTTCAATACAAGATCTTCATCCGA 15612 30 100.0 34 .............................. AAGAGAGGTAAACAGGCTAACGGCGTGGCAGCAT 15548 30 100.0 36 .............................. AGGATATGGCATGTTTGTGAAGTCTGCCACCACATC 15482 30 100.0 35 .............................. TTTCTAAATTAGAAACGAACATACCGGCGTTAGTT 15417 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 16 30 100.0 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : | # Right flank : AAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTTTTAATTCCTGTATGGTGCAATTGAAATTACCGCACCCAAGCCGGTTACAGATAGCTTCTGCAACGTTTTAATTCCTGTATGGTGCAATTGAAATATCGATAGCGGCCCCTTTCTGCAGGTCTTTGAGCTGCTGTTTTAATTCCTGTATGGTGCAATTGAAATCCAGCTCCGCGAGCGTCACGAGCTCGGGGTATTCCGTTTTAATTCCTGTATGGTGCAATTGAAATACCTCGTTATCCATTGCACCGCCACCCCCGCGGGGAGTTTTAATTCCTGTATGGTGCAATTGAAATGCATCGGGGATCAGCTGTATCCCGCGTACCAAACGAGTTTTAATTCCTGTATGGTGCAATTGAAATACCGAGTCGTAGTTGTTATTCAGCAGTACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 5693-5927 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI258981.1 Porphyromonas gingivalis F0568 Scaffold911, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 5693 37 100.0 29 ..................................... ACTAAAAAAGATCTTGGTGTTAATGATGC 5759 37 100.0 29 ..................................... CAACGAAAACAGATATGAACACTTATGCA 5825 37 100.0 29 ..................................... TCCCAACAAGGACAATTGTTCGGAAATAT 5891 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 AGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Left flank : ACCCCCTCTACGATGGAAACATCGGCTTCACTGCCGTAGCGATCATAAAGTCGGGCGATATGCTCCCGGCTCATCATGAAAGCATCCAGATTCACCGTTTCCGTTCCGCATGCAAGGCGGTGATACTTAGGATCGATATAGTCGGGACCGCATTTGAAAGGCTGCACTTTGAGACCGCGCCTTCGAAGCAATCGTAGCAATCCGAGCGTGAAAGTAGTCTTTCCACCACCCGATGAAGCAGCACTGATAAGGAGATGAGAGCGTTTGATAGGAACAGACAATTATATGAGTTAAAAGAATCGAGATTTACAGACAAAAGCCAAGGAAGAGAACGAAAGGCCTCCCGATCGAATGGATAGCTGCACACAAACACTGTCGGCTACAACCCTCTCCTCCGAACACGATCCCCCTATCCATTTTCCATCACTTTAGCGATCGCTAATTTAGGAATACTTCTCCATCAACAGCACAACTGCCCCTCTTTCTCCTTTCGGAATAAT # Right flank : CTGTATTAAACTTATAGATCCTATAGAATTAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTATTGTGCTAAATATTTAAGAAACAGATATGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTCCCAACAAGGACAATTGTTCGGAAATATCGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACACTAAAACTGTCAGGTATAGGAGTGGTATAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACTTATTCTCGGTTTTGAAGATATAACCGATAGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACCGACCCTTTATAAGTCATTGATAGGTTGAGACATATTATT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 6387-6153 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI258981.1 Porphyromonas gingivalis F0568 Scaffold911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6386 36 100.0 30 .................................... TATCGGTTATATCTTCAAAACCGAGAATAA 6320 36 100.0 30 .................................... TATACCACTCCTATACCTGACAGTTTTAGT 6254 36 100.0 30 .................................... GATATTTCCGAACAATTGTCCTTGTTGGGA 6188 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : ATATCTGTTTCTTAAATATTTAGCACAATAGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATACCCTTAGTTAGAAGGGTGGAGACAACTAATTCTATAGGATCTATAAGTTTAATACAGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACGATATTTCCGAACAATTGTCCTTGTTGGGAGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACTTGCATAAGTGTTCATATCTGTTTTCGTTGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACTGCATCATTAACACCAAGATCTTTTTTAGTGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACTATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTGTTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 487-2684 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI258874.1 Porphyromonas gingivalis F0568 Scaffold146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 487 30 100.0 34 .............................. TCCCGCCTTTTCAAGGCGACAACGGGTAACTGCT 551 30 100.0 35 .............................. GAACTTGACAAGACGGCAGTGAGTAAGATCAAGAG 616 30 100.0 35 .............................. TGAGGCAGGGCGGAAAGCCTGCAAGCGAAACGCCG 681 30 100.0 36 .............................. AAAAAAACACACACGATTCGTAGCAACCTTCCCCTG 747 30 100.0 36 .............................. CTTTGTTGATAGCGTTTCTGCTTTTAATCTCATGTC 813 30 100.0 35 .............................. ATCCGTCATCTCGAGCAGTTTGTACTCGTCGATGA 878 30 100.0 36 .............................. CTTGTACCATTTCACTGTCTTCCCGCTGCCCTGCAC 944 30 100.0 36 .............................. GAGGGGCGGGACGCCGGTGTAACACTGACGTCCAAA 1010 30 100.0 35 .............................. CCAAGCCTCCACGGTAGCACTGCCCCAAGCCTCCA 1075 30 100.0 36 .............................. TTGGCTAACGAATCTTGAGGACGAATCCTCTTGTCT 1141 30 100.0 37 .............................. CGACTTCTGTGTAGTCGAATCGATGAGTCCGCCCTGC 1208 30 100.0 37 .............................. CATAAGAAGAGCGGATCACGCCAACACCGATATCGTG 1275 30 100.0 37 .............................. TAAAGCAGCTGCCAGCGATTGGGAACCGAGTAGGTGG 1342 30 100.0 36 .............................. CAGCCCGTGGGCACCCGTCAAGGCCGAGCCCGGCGT 1408 30 100.0 36 .............................. CCTTGCCGTATTTCAACGCCACCAGCGGCGAAAAAT 1474 30 100.0 36 .............................. AAATTGTTTGGGCGGACGGTTCTCTCCGCGCTCTTG 1540 30 100.0 36 .............................. ATTCACTTTGTGGACAAACGTTGTCCTCTCCATCAT 1606 30 100.0 37 .............................. TTGGCGATTTCGCCATAAGTGATATTCTGTTTCCGTC 1673 30 100.0 35 .............................. AGAAGACGCTCTGAAAGACCACGCTCTTTTGAGCG 1738 30 100.0 35 .............................. ATCTTTGGGGCTTAACGCTTCAAAGATAGTCGGCT 1803 30 100.0 35 .............................. GGTGCCCAAAGGCGGCAAACAAGAAAGCCGCCGAT 1868 30 100.0 35 .............................. GCTCAATGCAACAGGGTGGAGCGCGTACACGACAA 1933 30 100.0 37 .............................. TATATCAACGCCCGCGTCCTCCCTGCCCTCTACATGA 2000 30 100.0 36 .............................. GTATTTGAAAACAAAAAAACATGCCCGGAATTTGAC 2066 30 100.0 36 .............................. GATGTGACCGACTCATATAAGGGTTTCTTGGAGAAA 2132 30 100.0 36 .............................. TAGCTTATGATGAGAATAACCTAATGAGCGTATGCA 2198 30 100.0 36 .............................. AGGCTTTGTTGCTGCTGAGTTTTATGACCAGAATCT 2264 30 100.0 34 .............................. TTTAATGAGCTACACTCCAATATAGAGATAGAAG 2328 30 100.0 35 .............................. TAGAGGGTCTTCTACTTCTCCACTAGTAAGACTAC 2393 30 100.0 35 .............................. TTGAACAAACTCTCCGTCCTCTTCTATCTCTATAT 2458 30 100.0 36 .............................. GAAGTTTATTATGCCACTTAGTTTATCTTGAATTTG 2524 30 100.0 36 .............................. CATGTAAGGAGTGCTATTATTCCCCACGACTGAAAC 2590 30 100.0 35 .............................. AGCCCAGCCCCACTCAAAAGTAACTCCAGAATTAA 2655 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATACATTTTAATTCCTGTATGGTGCAATTGAAATCGAATGGAAGACCGAGGGGAACCTGTTGTCGAACGGTTTTAATTCCTGTATGGTGCAATTGAAATAAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCTGTTTTAATTCCTGTATGGTGCAATTGAAATTGCTGAAGAACAACCGCCAGCAGTCGGAGGGGTCGCGTTTTAATTCCTGTATGGTGCAATTGAAATCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAATTCCTGTATGGTGCAATTGAAATCCGTTCAGGTTTCCCCTTTTGAATTTCAGCACCACCCG # Right flank : ATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //