Array 1 316741-313933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031334.1 Neisseria meningitidis strain M22293 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 316740 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 316674 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 316608 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 316542 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 316476 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 316410 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 316344 36 100.0 30 .................................... GTAACCGTTGCTTTGCATGGTATTTTCAGC 316278 36 100.0 30 .................................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 316212 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 316146 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 316080 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 316014 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 315948 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 315882 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 315816 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 315750 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 315684 36 100.0 30 .................................... TGGCACTGCCGTGTGTGTCGTTGTAGGTGT 315618 36 100.0 30 .................................... CGAAGTCATCAAAGACGTGACCGACGAATA 315552 36 100.0 30 .................................... ATAACCGACACTGTGCGTAGTATTTTCCGT 315486 36 100.0 30 .................................... ACCCGAAAAACGGTGATTCCTGTTAAATAC 315420 36 100.0 30 .................................... CCAACAGAAAAGAAAACGGGCGGGCAGTCA 315354 36 100.0 30 .................................... TTTTTTCATGTTTTATCTCCAATAAAAAAT 315288 36 100.0 30 .................................... TAAATGCGGTTAATGTTGCTTGGGTGCGTA 315222 36 100.0 30 .................................... CTCATTGTATTACGACATTTCGCCGACGGT 315156 36 100.0 30 .................................... AAAAAAACTTAAAACAACTTAAATATATCA 315090 36 100.0 30 .................................... CCAACTCGACATCGTAGGCGAAACCGAAGT 315024 36 100.0 30 .................................... GGTCAGATTACAACAATGTTGAGCGTGTGT 314958 36 100.0 30 .................................... AAACTCGGTGCACTGAATATGGCTCGCATC 314892 36 100.0 30 .................................... CGAATATATCAAGTTGGCTCGGATGCTGAG 314826 36 100.0 30 .................................... TGCTTAACGGGGCGTTGCTTAATCCGTTGG 314760 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 314694 36 100.0 30 .................................... ATAAAAAATCAAAAAAATCAAAAATAATAG 314628 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 314562 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 314496 36 100.0 30 .................................... CTTCGATGGCTTCGACGTTGAAGCGTTGGT 314430 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 314364 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 314298 36 100.0 30 .................................... CAAAACTTTTAGGGGGGGTCGGAAAAATAC 314232 36 100.0 30 .................................... CCCTAGTCTGCCATAACTTAATTTAGTACG 314166 36 100.0 30 .................................... TCGAAGAAACCGACTTTGAAGGCATCTTCG 314100 36 100.0 30 .................................... GGACGGCGGCGGGCAGGCTTTGCAATACGC 314034 36 100.0 30 .................................... AGAGGATGCCGGACAACGTCTTCGCCGGTA 313968 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 43 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //