Array 1 42-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHUL010000018.1 Phosphitispora fastidiosa strain DYL19 Ga0451573_018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... ATATAATATATCATATCCATTTATTGTTGT 108 36 100.0 30 .................................... TTTGCCCTAGAGATTATGGCCTAACTGCAA 174 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTGGTTCTCTGATGGATATTGATAAACTTACAC # Left flank : TAAACTTACACAATATTCTTCTCCTGGTACATTCCTCACATG # Right flank : CGATAAAGAGTTCGGTATTCCCGGGGAGTGTTTTAGCTAAAAACAACAAAAAGCGCCCAATTGGATGCTTTTGGCTGTTGCGGTTATATCTGTAGTCATCTCTCCTGCCACATGAACCTTACCTTTAATTCATCTCGCGCTTTCCCCAGAGTGTGCCGCCACATTATTCCCACAAATCATTGTCTTATCCTGATACTGTGCAAACACTGTTTCACACCTGTGGCAGGCAAAGCGAAACTCGCACCTGAAACAGGGCTCCAATTCCCGGTCATTCTGCCAGTATGGCTGAATTTTTTTCTCTGCAAATATTTCCTGTACCGTGGTATCCCGGACATGACCCAGTTCATGTTCCGACAGTGCCGGACAGGGATAATACTTGCCATCCCAGTTTAGGGCCAGCTTGCTGTGCCGGCAGGTATGGTTTTTTTGTTTGGCAATATACCTTTGTATGTCTGGTGGGATTAGATAATTTTCGCCATAAATGAAATCCTTAACCGGTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTTCTCTGATGGATATTGATAAACTTACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 236937-241263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHUL010000003.1 Phosphitispora fastidiosa strain DYL19 Ga0451573_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 236937 30 100.0 38 .............................. TTTTATAAGGTGGTCTCACACCATCAACTTTAACACCA 237005 30 100.0 37 .............................. ACTAAAGCCGGGGTGATACCTGATGATAGCTGGCAAC 237072 30 100.0 38 .............................. GATGATCAGTGATATCAAAAAAGTAACATCTGAAGAAG 237140 30 100.0 36 .............................. TCCAGAGTGCTCCGATTCATGAAGTAGGCCTGGACT 237206 30 100.0 36 .............................. GCCCAGTGATCCGCGATATCTGCAAACTGTTCCTCC 237272 30 100.0 37 .............................. ATCAAAACTATAACTATTTCAAACGTAACCTCGCCAA 237339 30 100.0 36 .............................. CGTGAAACAATTAACCGGGAAGAAGTACCGGCTAGA 237405 30 100.0 36 .............................. CTGTAATTCTCCGACCCAAACGCGGCCATTTCGGTT 237471 30 100.0 38 .............................. AGCAGCGGCCCCCACGTTTTAAACTCTTCCACGTTTTC 237539 30 100.0 38 .............................. TGCAACCAAGTCCTTAACTTACCTGCCGACCTACTATT 237607 30 100.0 33 .............................. TCCTCGGCGAAGGCCCCCTGCGTGATGACTTTG 237670 30 100.0 37 .............................. CCCTGGACCTGGACAACATCCAACCTGGTCAGACCCA 237737 30 100.0 36 .............................. CTTTACATATTGCTTCAGGTGCTGTTTTACCGTTAA 237803 30 100.0 34 .............................. AGTCCATCCAGTACTCAGGTAATAGATGCCACTG 237867 30 100.0 36 .............................. TTGAAAAAGACAGCACCGAAACCACTGGAACAGTAG 237933 30 100.0 35 .............................. CCGGAAATTCCGCCACAAAGGCACCGACATACACC 237998 30 100.0 37 .............................. ATACCTTCAGACATTGAAGACTTACAGGAGGCTTTAC 238065 30 100.0 39 .............................. ATCGCAGTCAACAGCGCCTCAGTATCACCCATAGCCACA 238134 30 100.0 38 .............................. AAGACAATTCTTCCATAATGCCGATAAGACAGGCTTTA 238202 30 100.0 36 .............................. AAGCATTTGCAATTTGCTTCAAGGGTGTTTCGTCGG 238268 30 100.0 36 .............................. TTTGAGAATCCACCCGTCACTCTTGGGTCAGCTACG 238334 30 100.0 37 .............................. GGATAAACAGCACGGTATCTGTTTCATAAAGAGCTAA 238401 30 100.0 39 .............................. CCTTTGTAATCCAGTTTATAACTTCTGCTTTTGTAGCAA 238470 30 100.0 38 .............................. CCAAATGGGGGGCCGCTGCTGCCGCCGCAGCCGGTACA 238538 30 100.0 38 .............................. TTTGGAGCGGAAGATAGAGGACCTGAACATGTCTCTGG 238606 30 100.0 35 .............................. CTGAAAAAGAAGTAGATTTTCCAGACCCTTCTTTA 238671 30 100.0 37 .............................. TGGCCCGCTGTCGAACTACATGCTCACCATTTTCTCC 238738 30 100.0 37 .............................. GGATAAACAGCACGGTATCTGTTTCATAAAGAGCTAA 238805 30 100.0 39 .............................. CCTTTGTAATCCAGTTTATAACTTCTGCTTTTGTAGCAA 238874 30 100.0 38 .............................. CCAAATGGGGGGCCGCTGCTGCCGCCGCAGCCGGTACA 238942 30 100.0 38 .............................. TTTGGAGCGGAAGATAGAGGACCTGAACATGTCTCTGG 239010 30 100.0 38 .............................. TCAGCACAGGTATTGATATCACCAAAAAAAATGTCACA 239078 30 100.0 37 .............................. TAGATTATATGCCACAGATAGAAATAATTTTTGAAAC 239145 30 100.0 36 .............................. AGTATTAATGTTCCTGCAGCTGCTGTAACGGTCATA 239211 30 100.0 35 .............................. GGCAGCGCATCAAGCCTTTGCCTAATTTCGGCTAT 239276 30 100.0 36 .............................. CGAAGCGGACAAGCGTCTTGAGGGCTATTCCCCATG 239342 30 100.0 39 .............................. CCAAAAGGAGGCTGGTGTGGTGGTTTGGTCAAACGACAA 239411 30 100.0 37 .............................. GCTGATAAGCGTTGTGGTCAGCGGCAGAAACCAAATC 239478 30 100.0 35 .............................. GTTGGTGCTAAAAGGAGTCTTGCAACAAAATATCC 239543 30 100.0 36 .............................. TTACAAAATCAAAGAGGAGCAGCACAAAAACGCTGA 239609 30 100.0 40 .............................. ACGAGGGCCGCCTATCCACCAGTACCTATGCCACTTATGA 239679 30 100.0 36 .............................. CCTACTAGATACGCAGCGCCGATGAGCAGAAACATG 239745 30 100.0 36 .............................. TCGTTCCTGTAATCCTGAATCATCTGGAACACCTGG 239811 30 100.0 38 .............................. ATGCTGCACGGGTCAGTATTGCAGCCCGCGACGGTTCG 239879 30 100.0 41 .............................. ATCTTCCTCGGGCAGTAATATTGTTGTAGCCGACCTGTCCG 239950 30 100.0 39 .............................. ATGCTCTTGTTACGTTTTGTCAACAAAAATGTAACATTA 240019 30 100.0 37 .............................. GATGAAGGACAGGCCACACTTGATAGCAGGAGTTTTT 240086 30 100.0 38 .............................. CCGGCAATTACTACATTCCCCGCAATGCCCCCAACATT 240154 30 100.0 38 .............................. GTCAGCCATGCCTCACATACAGCACAAACTGCCTTGTT 240222 30 100.0 39 .............................. GCGAATTTTGTCAATGCTTATCGCAATATTTATTTGATT 240291 30 100.0 47 .............................. ATCACAACAACGCAGCATCTAAATCATGCTATGATGCACATAACCGC 240368 30 100.0 35 .............................. AACTCAGCTTTAGACTCTCTGGACAGGATGGTTAA 240433 30 100.0 38 .............................. TGGTCTTTGAACTTCACCACATTAACACTTTGTTTAAA 240501 30 100.0 36 .............................. CTGGTCGGGGTGTAGACCTTGACCTCCTGGCCGTGA 240567 30 100.0 39 .............................. TTTTCATTAATCTGGCGGCTTCACTAAAAGAATATCCCT 240636 30 100.0 36 .............................. TTAGATGACCTTGTGGATGTGCCAAAACAACCGAAG 240702 30 100.0 35 .............................. CAGGCCAACGGTGAGCAAGCCGATAAGGCACTCAA 240767 30 100.0 37 .............................. TTTTCCATTAATCTTCATCCTCCTGTTCTCCGCATTC 240834 30 100.0 35 .............................. ATCCACCAATATCTCCCATCTCTCAAATTGTCAAA 240899 30 100.0 38 .............................. CGGCGAAGCTCAACTTTCAACTGATAATGGTGTTGCGT 240967 30 100.0 37 .............................. TTTTTTCCAGTATATGAGCCTTCCTGGTAGTCACCAC 241034 30 100.0 39 .............................. ACGGCATCGATTGAAATAACGGCAGAGGCGGTGAATGCC 241103 30 100.0 34 .............................. TGGGAGATGTAAGCAGGATGAGAAAAAGTTTTTA 241167 30 100.0 37 .............................. TTGTGTTTTGTATTGGCCAAATAACAAAGGATATTAT 241234 30 96.7 0 .........G.................... | ========== ====== ====== ====== ============================== =============================================== ================== 65 30 99.9 37 GTTTTCAGCTTACCTATAAGGAATTGAAAC # Left flank : TTTGTAGCCAGATGGTAAAAATAGCCGGTAGGTGATGGAATGTTCGTTATTTTGGTATATGATGTAAATACAAAGCGCGTCAGTAAAGTGCTGAAGCGGTCCCGGAAATACCTGAACTGGGTGCAGAACTCCGTCCTGGAAGGGGAAATCAGTGAAGTGAATTTTAAAAAATTGAAGACGGAACTGCAAAAAATCATTAACATTGAAGAAGATTCCTGCTTGTTTTATACCTTTCGAACTCTCAAATATTCTGAACGGGAAAGTATTGGAATAAAAAAAGGGGGAGAGGGAGTTATCATCTGAATTAAAAATGTCGTCTAAGTGCAATAACGTATTTTTTCCGGAGGATCGACGACAAATGTAAATATTGGATCAAGCCTTGATATACGAAGACTTGCATAAATGTGACCATCATGAAATACCTGTAATATAAAATATGACAAAATTATCCGGTGACGCATAAACCGTACTGTTACTGAATTTTTGCATCCCCGGAACGG # Right flank : CCGAAAAGTGAGAGCGTTCGCCTCACTATAATATTCGCAATCACCGCCATTCGACGTAATTGTAAATTTTACTGCTCAGGGCCAGCATGATAAGGATAATCACCGCATTTGCCAGGACGACACCCTGGAAAAATGCCAATGGAGTGCGGAATATAAAGGCCATAATCCCCCCGGCGGCCAGACCGGGCAGCAGCAGTAATATAATCTGCAGCATCATAAAGAGGGGAAATAATGCCTTCTGGTCAATGGCATCAGGGAATACCGCCCGGGTAATGAACCCTGACAGGAGAGTAATAGCATAGAAACTTATCACAAATAAGACCATAGTGCCCACTGTTACAAGATCTGCCTTTATCCATAACAAAAGGGCTAGATTTAATACCAGCACATTGATAGCCATTCTGATGATATCCTGCAGGTTTACAGCGGTTATTTTTTGGAGCGGGCTTCCGGGCATCAAATAGATGTAAGGCTTACCCCATTCGGTGAACCTGTTCTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 298038-301432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHUL010000003.1 Phosphitispora fastidiosa strain DYL19 Ga0451573_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 298038 36 100.0 30 .................................... TTCCGTGTCCTCGTTGTAATCGCTGAAGGT 298104 36 100.0 30 .................................... AAAAACATTGGATGTCTTTGATTGCGAATG 298170 36 100.0 30 .................................... CACACTCACGAAACGCATAGCAGCCGGTGT 298236 36 100.0 30 .................................... CCCAATACTCATCAGAGCAACTATTAAAAC 298302 36 100.0 30 .................................... TTACAGATGAATCTGTTGACCGAGGACTCG 298368 36 100.0 31 .................................... TGAATCAAATAACCAGAATATCCATTACCGC 298435 36 100.0 30 .................................... TTCACAGACATTTTTATATGCCTCACATAG 298501 36 100.0 30 .................................... CACACTCACGAAACGCATAGCAGCCGGTGT 298567 36 100.0 30 .................................... TATAATAATCTTTTCGACAGTGATGAATGG 298633 36 100.0 30 .................................... TGGAGGGTCCATGGATACACCGATCATAAT 298699 36 100.0 30 .................................... GGGACTTCAGTTCTCTATTAATTCAACATG 298765 36 100.0 30 .................................... AAGACAAGAAAATTTATTGAACAACAACAA 298831 36 100.0 30 .................................... TTTATTAAATGAGAAAATCTTTTGAGTGGA 298897 36 100.0 30 .................................... GCATCTCCGGTAAATAATCCCCAACAATGC 298963 36 100.0 30 .................................... TATAGAAGGTATTTTACCTACAGACATTAG 299029 36 100.0 30 .................................... CTACTGTTTTATCATAATTTTCTTTCATTG 299095 36 100.0 30 .................................... CATGGACTTCGACATATTTAATGAGAAAAA 299161 36 100.0 29 .................................... TAAAATAAAAGGAGGCCTAAACAATGGAA 299226 36 100.0 30 .................................... TGCGGCAGAAAAGTCTATTATCAATCATGA 299292 36 100.0 30 .................................... GATATGGATGCTCGATACGACAGAGATGAA 299358 36 100.0 30 .................................... ACATTCCAAGGAATTGTAATTCCCGGAGCA 299424 36 100.0 30 .................................... TAAAACAATGAATACTATATATATTCAGTA 299490 36 100.0 30 .................................... AGGTAACGATATCAGGATTGGCAGGATTGC 299556 36 100.0 30 .................................... TGCGGCAGAAAAGTCTATTATCAATCATGA 299622 36 97.2 30 .....................A.............. TTTCTTGTGCTGATTCAACAGACATATCAG 299688 36 100.0 30 .................................... GGGATACCAGACAGTAATAAGTGTCTTAAA 299754 36 100.0 30 .................................... TTGGCCAAAAACGGGGAGAACAATCGCAAG 299820 36 100.0 29 .................................... CTCGATGAGGCGATAAAGCATGTAACAAT 299885 36 100.0 30 .................................... ATGATGAACGTGGATATCATATTGGATTGT 299951 36 100.0 29 .................................... ATGCAATTGCAAGTATTAACCCTGCTACA 300016 36 100.0 29 .................................... CCCGTTTTCTTGTGCCGCTGTCGAGGTTT 300081 36 100.0 30 .................................... GCGGTGGTTAAGGGTATGCTAGCACCGTTC 300147 36 100.0 30 .................................... TCTTGTCCCTCCCGGTCCATGCGAGATTTG 300213 36 100.0 30 .................................... AAACAACTGCAGACTGACGTCGATGTGATG 300279 36 100.0 30 .................................... CGGAGACATTAACGGTGTTGACCTGTCTCA 300345 36 100.0 30 .................................... ACCAACATGCGAACACCCTTGATAACCACA 300411 36 100.0 30 .................................... CCCCTTTTATAAGTTATGAATAAGTTATTT 300477 36 100.0 29 .................................... AAAACAGTTAAGAGTGTCGCTAAAGTAAT 300542 36 100.0 30 .................................... GAAGTTTAAAAAGTAGTAGTAAAGTAGATA 300608 36 100.0 29 .................................... GCAGCAATATTTGTGTCTGCAGTGCTTTG 300673 36 100.0 30 .................................... CTAATGTTGTGGCATAACCTACTCTTATCA 300739 36 100.0 29 .................................... TTGTGCTTTGCCCTCCCGGACTAACTTTT 300804 36 100.0 30 .................................... ACTAAAGTTAATGACATGCAACTTACTGAT 300870 36 100.0 30 .................................... AAAGTTGTAGATAATAGTTGGTTAAGCATG 300936 36 100.0 30 .................................... CTTCGTCAAAAATTGCTATTTGGAAATTAC 301002 36 100.0 30 .................................... GATGATTATGGTTTTGAATGTAAAAAAGTT 301068 36 100.0 29 .................................... AACAGCCTTCCTGTTATCAATGAAGGGAT 301133 36 100.0 30 .................................... AATATTCTTCTCCTGGTACATTCCTCACAT 301199 36 100.0 30 .................................... TTGCTATGGAAGGAACTCATTATCAATTAC 301265 36 100.0 30 .................................... CTGATGCTGTGGCAAACGTCTTAACCTTTG 301331 36 100.0 30 .................................... AATATTCTTCTCCTGGTACATTCCTCACAT 301397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 52 36 99.9 30 GTTTTGGTTCTCTGATGGATATTGATAAACTTACAC # Left flank : CGATTTGGCAGGAAAATAAGCGGATGAGTCTTAGAAATGCCATTGACAGGTACATCAGCAGCCTTACCACGGCAATTGAGTGCCAGAATCCCAAATTCATTAAAATACCGATGATTATAGGCATTAATGCCCAAATGGGGGATAAAGGGGATGAATAATAGGTATATGCGTATTATGGTCATGTTCGATCTTCCGGTAACCAGCAACAGGGCAAAAAAAGAATATACGAGATTTAGGAAATTCCTGATTAATGACGGGTATGATATGCTGCAATACTCCATTTATTGCCGCATTACCAGGAACCATGATGATGCATCAAAACATGTGAAGCGTCTCAAAAGAAACCTGCCTTCTAAAGGCTCGGTCAGAGCAATGACCGTGACGGAAAAACAATATGCCTCTATGCTTGTACTTGTGGGCGAAATTACTGCTACCGAGGATTTATTAAAACCGCGGGAAATACTTGAATTATAGCCTGCTTATGGTAGAATAAATTTAAG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTTCTCTGATGGATATTGATAAACTTACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 5077-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHUL010000004.1 Phosphitispora fastidiosa strain DYL19 Ga0451573_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5076 30 100.0 36 .............................. GTAATCATTTCGATTTCATGCTCTGGCACACCATAC 5010 30 100.0 36 .............................. CATCGAGTGCATAGATAGCAGTGTATTTTTCTTTGT 4944 30 100.0 36 .............................. CAGGTCCGTAGTACCGTATTTTTGCATTACATTCAC 4878 30 100.0 38 .............................. TTTCTCTACAGGACATTCTATGCCTGAGCAGTATTCGT 4810 30 100.0 36 .............................. GCTTGATGGAGAGTATCGGTTTCATGTGGTTACCTA 4744 30 100.0 35 .............................. AGGTTAGACAGCGTTTCAGATTATGAGATTACTGT 4679 30 100.0 35 .............................. TTAAAAGGACACTAAGAGAGGTAAGTGGATTCAGA 4614 30 100.0 35 .............................. GTATTATCAGGAAACGGGCAATACACAGATGGCAC 4549 30 100.0 35 .............................. TTCGGTGTAGGTGTTGAGATGGAACAATGGGCTTA 4484 30 100.0 35 .............................. CTGCGCTTTTACCTGTCTCCTGCCTGCGGTTCCAC 4419 30 100.0 36 .............................. TTGAAACTTGCGCCATAACTTGTTTTCGCGTCCTTT 4353 30 100.0 36 .............................. TAAAAAGAGGGGGTTATTTTTATTCTCTCAGCCTTC 4287 30 100.0 35 .............................. TGGAAGAAAAGCAGGCGCACTTGTTCTGTTGTCAA 4222 30 100.0 36 .............................. CCTTTTTTCTGGACTAACCCAGCCATTTCTAATATA 4156 30 100.0 35 .............................. TTCCATGTTATACCTAATTCTATTAACTCTTTTCG 4091 30 100.0 35 .............................. CTGTCATTGAATATTTTATCTTCCGGATGCTCATA 4026 30 100.0 35 .............................. TCGCCGATAAGGGATTTAATAACCGGCATAGAACA 3961 30 100.0 34 .............................. ATGATTCAGCGGCAGCTTGAGAATCACAGTATCG 3897 30 100.0 37 .............................. CTTATCGAATGGGATTGGGGTCGTAAAGAATGCATAA 3830 30 100.0 36 .............................. TGAAAACATTAACGTGGTATCTACTCATAGCCATAG 3764 30 100.0 35 .............................. GTATATAGGGGCAATTACTACGATGTAACACAGAT 3699 30 100.0 36 .............................. CTTATCTGACAGACCTTTTGCTTGCCGGCTGGGTCT 3633 30 100.0 36 .............................. CATATTCTGCCAGGGCTAAGGTTATCACCGTTAGGC 3567 30 100.0 34 .............................. AAATATTGCACGGGCAACTTATGCACAATATGAA 3503 30 100.0 38 .............................. CATTTCCGCACTTTGCTACCTGTGTGGCCTTGGAAAAC 3435 30 100.0 36 .............................. CCAAGCCATTCAAACTTAATCACTGCCCACCGCTCC 3369 30 100.0 35 .............................. GGTTCCCCGGCCTACCATCTGGCAGTATAGGCTCC 3304 30 100.0 35 .............................. GTAGTACATGTAAATATATGTAAATGTATAGGCAA 3239 30 100.0 37 .............................. TTTTCTAATTCGTAAATAGTAGATTGATTTTCTATTG 3172 30 100.0 38 .............................. CTATACAACAAAAGAAATTATCAGTAGTACGGTTTTTG 3104 30 100.0 36 .............................. CCGGAAAAAGATACATAAATCTTTTCAAATTCCTCA 3038 30 100.0 36 .............................. AAGGCAAGACCAGGGCTAAAACAAACCTGTTATATA 2972 30 100.0 35 .............................. TTCTTCCCTTTGCGCTTTTTTATACTGGCCATTTA 2907 30 100.0 35 .............................. TTATTGGACCGCCCCGAAGTGCTGCCTGCCGGATG 2842 30 100.0 36 .............................. CGGCTTTGAAACCAATCCAAAACCACATCTACATCA 2776 30 100.0 35 .............................. TTTCAATTGCGTGCCTGATGCCTCTCTCGATCTTG 2711 30 100.0 35 .............................. CTCTAATACAGCAAGTTACTTGGCTGTAGAAATTA 2646 30 100.0 36 .............................. GGTATATTCATCCTTGGTTTTGGACACCGGTTCATC 2580 30 100.0 36 .............................. TGCCACCCATGCGCTCCGTAACCAACCGGCAGAACT 2514 30 100.0 35 .............................. TTAGCTTCATCATCGCCAAGCCCCCCACGGCTTCA 2449 30 100.0 35 .............................. CTAGAATGGCAAGTCTGTTGTTGGACTTCGCTTTG 2384 30 100.0 36 .............................. CACTTCTGTATATTCACCCTGGCCTGCAACATGAAA 2318 30 100.0 36 .............................. GAGTTACTCAGCTACAGCTATTTTTACAGCCATTGG 2252 30 100.0 36 .............................. GGTTGAGCATGGCGAAGTGGTATTTGTGGTACAGGA 2186 30 100.0 35 .............................. GCCGCATCTGGGCCAGGAACTGGCGGAACTGATAT 2121 30 100.0 36 .............................. TTTAACTAAATCTTTCAGTAGGACATTCTCTTTTTC 2055 30 96.7 36 ....C......................... CCAATTCTTTCTGACTTAAGCCTTTTTCCTCTCGTA 1989 30 100.0 35 .............................. GCGAATTGGGCCCAAAAAAATGACGCTCCCCATAA 1924 30 100.0 35 .............................. TGACTTGAAAAGTGGAACCAGGTGTGGATTACCAG 1859 30 100.0 35 .............................. GGTGCAACCGGTACTTTATGTATGATGCCGCACTT 1794 30 100.0 36 .............................. TCTAACATTGCTTGAACCTTTTCTCTTAAATCTTTC 1728 30 100.0 35 .............................. TTGCTTGGTTTACCATCTTGAGCGTATTCCGATAC 1663 30 100.0 34 .............................. CCAGTTATCGCCAACTTAGCACCGTGCCGCTTCG 1599 30 100.0 35 .............................. CTGGCCATAATCATCCTTCCTTTACCAATATTTCC 1534 30 100.0 37 .............................. CGTTTCCCGCACGTAAAGGACCGTCCCCTGGTACTCT 1467 30 100.0 36 .............................. ATGGATATGTTTACGACAAAGAAACATCCTCTTATA 1401 30 100.0 36 .............................. TTGAATGTGGCAAAAAACAATCTGCCAAAAGCTATG 1335 30 100.0 35 .............................. TTGAATGTGGCAAAAAACAATCTGCCAAAAGCTAT 1270 30 100.0 35 .............................. CTTGGAGTTTACGGGGTATCAATCATAGGTGCAGA 1205 30 100.0 37 .............................. TGGGTATACTCAAAAAAAGGAATGCTTGAAGGTTTAG 1138 30 100.0 36 .............................. ATGGTTTAGCTACAGTGAAGCAGCTTGGGTCTCTCG 1072 30 100.0 36 .............................. GTGTTTTTTGATTCAATAAAATTTTTAGATGCTACA 1006 30 100.0 37 .............................. CCAGGTAACAGGTGAATCAAAGTCGTGGTCGTTTTTG 939 30 100.0 35 .............................. GTTACCACGACTGCACAACTGGCACCCCCGGTTAC 874 30 100.0 35 .............................. GTATAAGCTGTTTCCAATACTCTTCCCACACGGCA 809 30 100.0 35 .............................. GAATAAAAGGGGGTTAAACTAATATGGCTAAATGC 744 30 100.0 34 .............................. GTAACCGTGAATACCTGTCAGACATAGGTTTTCA 680 30 100.0 36 .............................. ACCCGACTGCCAGTGCAAGTGTTACAGCCTTACTTA 614 30 100.0 35 .............................. CAAACAGTTAATTCAGGAGCGGGGCCGTAAAATGA 549 30 100.0 37 .............................. GACTATGAGCCCTGGGTATTTTTCTGAATACTCCAGA 482 30 100.0 36 .............................. CTCCATCGCATCGCTCACATATTCCATGCTGACTTA 416 30 100.0 36 .............................. TTATCACATAAGCCGCATATTGCACCGTGTTTGTTC 350 30 100.0 36 .............................. AAATGTGTCGTCCAATTGCTATGCCGACAGTCAAAA 284 30 100.0 36 .............................. TAACCGGAATTTCGGTTCTGCCCAAGTCCGAGCATT 218 30 100.0 36 .............................. TAAGAACTGGGGGACAGGGGCGCCGATTCGAGATCC 152 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 76 30 100.0 36 GTTGAGATAGAACCATATTGGAATGTAAAT # Left flank : AGGGAAAAACCTTATCAGGGCTTTAAGATTTGGTGGTGATTATTTTGTATGTTATACTGGTTTATGATATAAGTAGTGAGGAAAATGGAGCCAAGACCTGGCGGCGGGTTTTTAAAATCTGTAAAAAATATCTGACACATATTCAGAATTCGGTATTTGAAGGGGAACTAAGTGAATCCCAGATATTCAAACTAAGGGGTGAGTTGAAAAAACATTTGCGTATTGATATGGATTCATGCATCATTTTTAAGAGCAGGAGTGAAAAGTGGCTAGATAAGAAATTTTGGGGAAGGGAAGATGATGCAACAAGTAATTTTTTATAAGATTTATGCATTGTTGTCATATGTCAACCGTAAATAGTGCCAAAAGGCCGGGGGTGTGACATACAAGAATGAACGAAAATCGGGATTTTTCCCTGGTTCAAAAAGCTCTAAGACGTGTTAATACAAAGTATTGTATATTTCAACCGTAAGTTTTGTATGATTATGCATTTTTTACGG # Right flank : TGAGTAATCATCTGAGACAATGGCAGTGAGCCCGGTGGTTGAGATATGACCCATACTCGATTTGCCGGACACAGCTTAGTTAGGATAAAATATAGCTGTGGGGAGGCAATGACATGAAAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGATAGAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 182708-184499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHUL010000005.1 Phosphitispora fastidiosa strain DYL19 Ga0451573_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 182708 30 96.7 35 .............A................ CCGTTTAAGTTGGTAGTAAACAATACAACAAATAA 182773 30 100.0 35 .............................. CGTGAAATGGATGCCGAAGCAGGGTTGATGGAGAA 182838 30 100.0 34 .............................. TTGATCAGGCTGCAGATAAACTATCTAAGTCTAC 182902 30 100.0 35 .............................. TCCAGTTTGCCATCAAGGGCTGTTGATAGAGAAAA 182967 30 100.0 35 .............................. GGGGCAGGCACAACGGCTCTGGTTGCAATACAAAA 183032 30 100.0 35 .............................. CAACTATAACAAGGTGCATCGGCAAGCGGTTAAAG 183097 30 100.0 34 .............................. TGAAACAAACATCGGAACGCTGCCGGACGAATGG 183161 30 100.0 34 .............................. TTGGTCCAGCTGCAGGATCATCCGGCATAAGCAT 183225 30 100.0 34 .............................. GGGAAAAATCTGACTGATACCCGGCCATACATTC 183289 30 100.0 35 .............................. TCTTGACCGCTCAGAACTGCTTCCGGTTTATTTTC 183354 30 100.0 35 .............................. GCAAGAATCTGGCCAACCTCCTCGTTAGATATCAG 183419 30 100.0 37 .............................. CAAAGTAGCCGGGATGTTCTTTGGCAATATTGGCCAG 183486 30 100.0 35 .............................. AGCATCATCTGCCCCGAATGTAGCCCTGAAAGTAA 183551 30 100.0 36 .............................. TTCGCCTTGCCGTCACCTTCCACCGGTTCAATGCCC 183617 30 100.0 39 .............................. CGGTCCATAACGAGATATCAATATGAAAACGCGGATTGT 183686 30 100.0 36 .............................. CTATGCAGACTTTGCGACTGCCATAAAGGTAAAAAC 183752 30 100.0 33 .............................. GGAAGCAAGCCCATGAAGAATGTCAACTGTTAG 183815 30 100.0 35 .............................. CTAAAATCTTGTCTATTGTTTGAACTGAAGGCTCC 183880 30 100.0 37 .............................. CCTGCCGCTTGATTCAATACTGGCAGCCGAATGGATG 183947 30 100.0 36 .............................. TCCAATTCTGGCGGTCTCATTGTTTCTCAGAAAATA 184013 30 100.0 36 .............................. TAATGACCATGAGATATAAGAGATGCCTGTATCTCA 184079 30 96.7 35 ...C.......................... GAAACATTTAAACTTGTATAGCGCTCCCTGAAGTC 184144 30 100.0 35 .............................. TAAGTCCAAACGTCTTCCCAGTGCCAATTTGCCAA 184209 30 100.0 37 .............................. TGATTCATTCTGAGATTCTTTTTGCTGCACTTTTTCC 184276 30 100.0 34 .............................. TTGAAATTGGCTGACCAAGGTAAGGCGGTGGTGA 184340 30 100.0 35 .............................. TGAGGCCTTTTGGTAGATATCTCAAAGGTGTGCTG 184405 30 100.0 36 .............................. TCAAAAAAGGTCCAAAAAGGCGAGCGTAAGGCCTGG 184471 29 90.0 0 ........................-.G.C. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.4 35 ATTTACATTCCAATATGGTTCTATCTCAAC # Left flank : GTATTTCTTGTATATTATGTATCTCAGTTTATAAAAATTTGAATTAATTGTCAAGTAAAGTACCTTTTTAAAGTGGGCTTAAGAATTAGAAACCTATGGATCTATTGCTTTTACATGTAGGGATAGTATATAACCGGAATATGGATAATTAATAAATCTCACACTCTATTTCGGACCCATCAAGCAGGCTAATTACCAACCTTGCATCATAGACCGTTATCTTTTCTACCAATTTAAAGTACAAATCCACATCAAACTGATCAATGGTCCTTGCTGTTTGGAACGTTGCAATAAAGCGTTTTGCGATTACTTTTACAAGTATATTGTAGAACGCCATTTTAAATTCCTGAGAATCGCCCAATTGACTGCAAATTAATTTCTGTTTCCCTTACCCATATCTGATTTGTCTATGCCGTAGATTACGGCATTTTTTTGTCTATCAAATGGGGTATGGGTCACTATCTCCGAATTTGTACGGCAAGACGTGCATTACCGAGATA # Right flank : CTTTCTTGATAAACTGGACACTCTAGAGTTAGGATTGCTCCTAATATCTCACAATTGCTTCGAATTTAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTTCTATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //