Array 1 1885832-1888721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLN01000001.1 Clostridium algidicarnis strain B3 BV55DRAFT_scf7180000000002_quiver_dupTrim_6430.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1885832 37 100.0 35 ..................................... CCCTCCTTTCTAATTTCTTTCTTTAAGTATAAACC 1885904 37 100.0 37 ..................................... CGCATATATGTACAATCCTTTTATTGTACATATAAAC 1885978 37 100.0 37 ..................................... CCTGTATCTCCTTTAGCGCCTTGCTCTCCTTTTGCTC 1886052 37 100.0 37 ..................................... CGATAAACGTAGATATTAAGAGTATATACTATATTAA 1886126 37 100.0 36 ..................................... TTTAAATAATCCTCAATCCATTCATACTCATTAAAG 1886199 37 100.0 38 ..................................... TTGAACACCTGTTCACATGGTCAATTTAGGCTTATAAG 1886274 37 100.0 35 ..................................... CTCCTTTTTGTTCCCTCCTTCTAATTACTTTCTTT 1886346 37 100.0 36 ..................................... TTGCTTGACCGATACTCTACAACTCTTATATTAAAC 1886419 37 100.0 37 ..................................... TGGTATGAACTAATAATAACAAATAAATTTGCTTTAT 1886493 37 100.0 37 ..................................... GAATATATATGAATAAATTAAAAGGAGGTCGGTTATA 1886567 37 100.0 37 ..................................... GACTGAAGGTTGACAAGTAGTTGTTAAGCTTTATACT 1886641 37 100.0 35 ..................................... CTAACATATCTAATTTATATTCAACGTCTAACTGC 1886713 37 100.0 35 ..................................... CCGCTCAAATATCAATTTTAAGCATATCTTTAATT 1886785 37 100.0 35 ..................................... ACTATAGATCAATTTTGAGTATTAAAACAATATAA 1886857 37 100.0 36 ..................................... TCCTTTATATAAGTCATATGTCTTAAAATTATCAAC 1886930 37 100.0 36 ..................................... TTCTACTTGTCCACCCTCTGGACACCAACTTTTTAT 1887003 37 100.0 35 ..................................... TTTGCCTAATATAGCTTTATTAAATGCTACAACTT 1887075 37 100.0 38 ..................................... GCCCAAAAAATAGAAGGTGTCATATAAGGATTAGGCAT 1887150 37 100.0 36 ..................................... TTAAAATGTAACACTTCTTTTTCGTTTAGTACGTAT 1887223 37 100.0 34 ..................................... TTTTATAACCTTTTGAACTCCGCTTTCAGTATCT 1887294 37 100.0 38 ..................................... ATTGTCCATTAGTATATGCACTCTCTTGTGACACCTAT 1887369 37 100.0 35 ..................................... TTCTTTATTTTCATTGATAATTATTATTTGTGTTC 1887441 37 100.0 36 ..................................... TTAATAAAAACTTGAACTTTCAAGTGGTATTAATTT 1887514 37 100.0 36 ..................................... CAAAGTCCATTTAAGACTATATAAAGTGTTTAAACC 1887587 37 100.0 36 ..................................... TTTTTGCCAATTCTATGAGTGCCATTTCAAGTTCGG 1887660 37 100.0 35 ..................................... GATTATTTCACCAAAATTATACCGGCAACAACAGT 1887732 37 100.0 36 ..................................... TAATCATTTTATATTCACCCCTTAGCAATATCTTTG 1887805 37 100.0 37 ..................................... CCTATATTCAAGTTCGGATACCCATTTTCATCATCCG 1887879 37 100.0 38 ..................................... ATTATATATAACTTAAATATAATAAAAGGTGGTTGATT 1887954 37 100.0 36 ..................................... TTCTACTGGAAAAGTGAAAGCACTATAAGCTACTTA 1888027 37 100.0 35 ..................................... TAATTTTATCCAGTATTGTAGGAATATTATCGCCA 1888099 37 100.0 37 ..................................... CGTATCGTTCCCATGGTATTTCTACTTCTTGGTTTTC 1888173 37 100.0 37 ..................................... ACATAAAGCCATTACGAAAAAATAGAAAGGAAATAAA 1888247 37 100.0 37 ..................................... TATAACCTTTTATTAAGTCATGAAGCCTATCATCATT 1888321 37 100.0 35 ..................................... AAGTGTATTAAGGGTAGGAGGATTTCTCACCCTCC 1888393 37 100.0 36 ..................................... AGATTCCTTAAAGTTGGCTCTAGCAATTCCTTTCAC 1888466 37 100.0 36 ..................................... ACCTAAATAGCCGCTTAGAAAGCTACCACGTGCCTC 1888539 37 100.0 37 ..................................... ACAATTACCAATTGTAAATATTATAACATTATCCCCC 1888613 37 97.3 35 ...........T......................... TGAGAAGGTGCAATTATCAAAATTGCACCCTTCCT 1888685 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 40 37 99.9 36 ATTTCTAAAGACATTAAGCTCCATTGGAGATTGAAAC # Left flank : GCTTTGATGGAAGAAATTGAATATATACCATTTTTAATTAGATAAAAGGAAGTGAATATGGTATGATATATTTAGTTAGTTATGATATAGTTGATGATAAAAAAAGATATAGACTTCATAAAATGCTAAAAAATTTTGGGTCTAGAAACCAATATAGTGTTTTTGAATGTGATTTAGATGGTAAAAAGTATGTTGAACTTGAATATAATATTAGAAAGATAAAGATTGAAAAAGGGGATAGTATTATGGTATATCCTATATGTTCCTCTTGTGAATCTAAAATTATAAGAAAAGGTTCATTTGTTCCACTGGATGTTACAAATATGATTTATTAAATCGCAAGCCTATGTGTATTGAAAAACACGGTACCTTGGCGATACTTGCAAATAGCCACTTTAGCAGGGATTACTGTAGTATTCACAAAAAAAATATTGAAGAAATAGTACCCCTGCGAAAAGAGGCCTGTAAGACCAGTGATTTCAAGGCCTAAATCGCGAGCG # Right flank : CAACAATTTCACTTTATGTGTGTGTTTGTTTTTATAATTTTGATGTAGGGTAGAATTAATATTTTACATAGATAAATAAAGATAATTACTAATGTACTGGTTTATATTAAAGAACTATGTGTTAATATATATGATAATAAGAATAGAGGGGATGGTTAGTATGGTTACTATTTGTATTGATGAAAGTGGAAACTTTGAAAAAAAAGAGTATTTAAAAAAGTTTATTGGTGGAGTCGTATATGTAGGGGAAGACTGTGAGGATGAGGAAAAAAGATTAGATGGCTTTTTTAAAAAGCAGTGTGAACTATTTTCACTAGATTATCCAAGGGGGATACATACAACTGAAATGAATTCTAATAAAACGAATTCCGAAGGTAAATCAATAAAGGAAAAGATTATTGAAAATCTTAAGATTTACTTAAGAGAAAATGGAAAGTATCATTTTACTTGTCTTATAAAGAGTAGGACAAAGAGAAAGGACTATGTGAATGTATCAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAAAGACATTAAGCTCCATTGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 1901231-1902508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLN01000001.1 Clostridium algidicarnis strain B3 BV55DRAFT_scf7180000000002_quiver_dupTrim_6430.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1901231 37 91.9 35 .GCG................................. TCATCTTTTTCTACACATTCATTACATTTAGCTTT 1901303 37 100.0 37 ..................................... TTAATTCTCCTATTATCTGTTGGCTTTGCTTATTTTC 1901377 37 100.0 37 ..................................... CATTCTGTTACATCATCGTTACATGTAACGCTTTCTA 1901451 37 100.0 36 ..................................... TATGGAGGTTTTACCATGGAGGAATGGAGAAGAAAA 1901524 37 100.0 36 ..................................... TATGGAGGTTTTACCATGGAGGAATGGAGAAGAAAA 1901597 37 100.0 35 ..................................... TTAACAAAGGGTTAAAAGATATTAATTCAGAATTA 1901669 37 100.0 37 ..................................... TGAAATTTTTCACCACATTCACATTGTAATGTTAATC 1901743 37 100.0 37 ..................................... TCCAGAAGAAGGATGCCGAAGCGATTGCCCTTTAAAG 1901817 37 100.0 37 ..................................... GATTAAAGAGTATAATTATCTTTAGATACAAAATTAA 1901891 37 100.0 35 ..................................... TAACCCTTCTTTATTTGCTTCAAATCCTATTATTA 1901963 37 100.0 36 ..................................... ACGGAACACAAGCCACAGAGAAGGAAGGTTTAGAGC 1902036 37 100.0 34 ..................................... GAAATAAGGTATCAAAAACAAATCTTCTTTTTGC 1902107 37 100.0 35 ..................................... ACTCATACAAAATGCTTGAACTATCCCTTGTAGAT 1902179 37 100.0 36 ..................................... GAAGGCTAAATTGAAAGGGAGTGAATCCATTTGGGA 1902252 37 100.0 38 ..................................... AATTCTATAAGTGGCATTTCCTTTAAGTTCAAGTGTAT 1902327 37 97.3 35 ...........T......................... GTAGCATTTATGGACATGCTAGGGTTAAAGAAAAA 1902399 37 97.3 36 ...........T......................... ATGCGTGTAGCCACCTTGATAGAAGGGTTTACCTTT 1902472 37 75.7 0 ....................TGG.G.T.C.C.T...G | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 97.9 36 ATTTCTAAAGACATTAAGCTCCATTGGAGATTGAAAC # Left flank : GATGATTTACAAAAAGAGGATACTGATGAAAAGGAATCAAAAAATGTGTATGATGGGCCTGCAGTTAGTGAAGATTTACTTAAGAAGTTGTTAGAAAAAAATAGTAGTAATTATAGACAAACAAGCGATAAAAATAGTAAAAAGAATAGGAAAAGGTAGCTTGTAAAACTATTTTTGGATTCAGGTGGAGCTTAATTATGATAAATGCTATCTTCATCTGAATCTTAGAATAATATATACTATTTTTAATTAGATAAAAGTAAGGCAATATGGTATGATATATTTAGTTGGTTATGATATAGTTCATGTTAAAAAGTGTTATAAATATGATTTATTAAATCGCAAGCCTATGTGTATTGAAAAACGCGGTACCTTGGCGATACTTGCAAATAGCCACTTTAGCAAGGATTACTATAATATTTGTAAAGCATTTTATTGAAGAAATAGTACCCCTGCGAAAAGAGGCCTGCGAGACCAGTGATTTCAAAGCCTAAATCGCA # Right flank : GAAATACTTATAGGAGTACATTATTTAAATTAATAACAAAAAAACTTTAGTAGGATTAATTCAATCTACTAAAGTCTTTTTTATTGTAGTGGGTAATAGGATAATTGGGTTTTTACTGCTTGGTTTTTTTATTTACATAAGCTATATTTAATAACTAAGTCTAAAGTTGCTATTAAAGCATCAATGTGAGTTCTTTCATAGGCATGTGAAGCAAATACTCCAGGCCCTATAAGAGCTGCTTTAACGTCCCAACCAGCGCCTAATACTGCTGAAGCATCTGAACCGTAATATGGATATATGTCGATTTTATAGTCTATATTATTTTTTATACATACATCTATTAAGGTTTTTCTTAAATTATAATCATAAGGTCCTGAAGAGTCTTTTGCACAGATGCAAACAGCATATTCAGTAGAGTTTTGACCAGGTCCTGGTGCACCCATGTCTACAGCTATAAATTCTCTTGTATTTTCAGGAATAGAAGCCTTTGCACCATGTCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAAAGACATTAAGCTCCATTGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 2569312-2568763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLN01000001.1 Clostridium algidicarnis strain B3 BV55DRAFT_scf7180000000002_quiver_dupTrim_6430.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2569311 29 89.7 38 ..CCA........................ ACTATTTCATCTTGTACATTAGGCAATCCCATATGAGG 2569244 29 100.0 36 ............................. TAAGGTATTGCGTAACATTCTTTTTGGAAAAAGTCT 2569179 29 100.0 36 ............................. CGGGATTTGATAGAAACATCACAGGCATATATAGAT 2569114 29 100.0 36 ............................. AATAAAATTAATAGATATTAGATAACATAAACCAGG 2569049 29 100.0 35 ............................. GTATTACAAAGTTGCAGTGAGGCAAGTATCGCTAA 2568985 29 100.0 35 ............................. ATTGATAAGTTTACTGGAGAAATAGAAATTTACAA 2568921 29 96.6 36 .......................C..... TCTGTTTCACCTTCTTTAGCTTCAAAAGGTGTTCCT 2568856 29 100.0 35 ............................. ACAACTATGGTTATATTAGGTAATGGAAATGATAC 2568792 28 79.3 0 ............G...-......T.T.GT | A,C [2568770,2568782] ========== ====== ====== ====== ============================= ====================================== ================== 9 29 96.2 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : TATCCATGTCCTTAAAGAAGGGTGGACCTACTTAGCATCTGTGATGGACTTATACTCCAGAAGAATAGTAGGCTACGCCTATGGCGAGCATATGACCGCAGAATTAGCCGTTAATGCTGTTGAAAATGCTTGTCTTAATGTTACTAATCCTAATGGTATAATACTTTATAGTGACCTTGGAACACAGTATACTAGTAAACAGTTTAAAAAGATAATTGCTGATAAGGGCTTAATTCACTCTTTTAGCCGTAAGGGTAATCCCTACGATAATGCTTGTATAGAGTCATTTCACTCTATTCTTAAGAAAGAGGAAGTATATGTACATAAATACCCTAACTTCGAATATGCACAAAGAGCTATCTTTGAATTTATTGAATCCTGGTATAATCGTAAGAGAATTCACGGTGCTTTAAACTATATGACCCCAGTAGAATTTGAAAATCTTAGAAAAGAAGCTTAGTAATATTGTACGACTTTTTGTGTCTAGGTTATTGACATAG # Right flank : ACATTAATCTATGAAGAGACCTTTGGTAAAAGCAATAAAGAACTTAAAGCTGATTGAATTAAATACCTTAAAGATAATATTAAATATATAGAATTGATACTCTGATACAAAACATTATTATGAAGAACTATAATTTGTTTTTTTATTGCTCCCTTTTTTTATGATCTGAACATTCCCTCCATCTTTTAAGAGGTGGGGATTATTTTTTATAAGAAAGTTTACTATTATTAATAGATATTCTAACCTTATTAAGGTAAGATGAAACCCAAAATATTATTATTATGATATAGTTAATTAAGAACACTACATAAAGAAAAGAGGAAAAATCATGTCAGAATGTATATTTTGTAATTACAATAAATCAGAGATAATAGCAGAAAACAAATACACATTTGCTATCTTAGATCACTTCCCAGTAAATGAAGGTCATTGTTTAATCATACCTAAGAGACATTTTATGAACTTTTTTGAGGCAAGTGAAGAAGAGGTTAAAGCCATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2573516-2570556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNLN01000001.1 Clostridium algidicarnis strain B3 BV55DRAFT_scf7180000000002_quiver_dupTrim_6430.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2573515 29 100.0 37 ............................. CTGAATTAGCTTCATTAGACGATGAAGAAATATATTT 2573449 29 100.0 36 ............................. TGATAATTGGCTTAATGCCACAACACACACTTCTAA 2573384 29 100.0 36 ............................. AAAGACTTAAACACAACAAGATTTTTACAGAATTGT 2573319 29 100.0 36 ............................. TAGATAGCGTGTAACTGTTGCAATGGATAACCGCAT 2573254 29 100.0 36 ............................. TGCAATTAGTAAATACGTTGTTTTTAACCGCTATTT 2573189 29 100.0 36 ............................. GTGAACCCCATTGCTAATAATGTAAACCCATCTCTT 2573124 29 100.0 37 ............................. TAGTCCCTATTTCAAAATTCCTTATCATTGATATTAT 2573058 29 100.0 37 ............................. TTAATGGATAAACTAAGTTCGGGGATAATGCTTATAA 2572992 29 100.0 36 ............................. GTAGAAGATAGTGCAACAACAGACGATAAATACAAT 2572927 29 100.0 36 ............................. TTGAGCTTCATACTTCATGATATTCTCAATTGCAAA 2572862 29 100.0 35 ............................. TGGTATTTCTACTTCTTTGTTTTCCATGTGCCCTT 2572798 29 100.0 36 ............................. AGGGTTACAGGGTTGATGTCGCTAAATCGATGTTTA 2572733 29 100.0 36 ............................. CTTGACTACACATTTTTTACAAAATTTTTTAAAAAC 2572668 29 100.0 36 ............................. ATAGAAATACTCTATTGCTTTTCCAAATTTATTCAT 2572603 29 100.0 36 ............................. TTAACTCTTGAGTGTTAACAGTCTTTTGGCCTTCTA 2572538 29 100.0 36 ............................. GAAGATAAAGCACAAGAAATGATATTAGAAAACAGT 2572473 29 100.0 36 ............................. AATTACAGAGGAAGAAAGGAATGATTATATGTCACA 2572408 29 100.0 36 ............................. AGAGGCTGGATACATCGAAACTAGGCAATTAAAAAT 2572343 29 100.0 35 ............................. CCGTTCCACCACGTGGATTCATTTTTATATTGCAA 2572279 29 100.0 36 ............................. ACAAGTAGTCGCGGTAGATAGCAATATGGATATAAG 2572214 29 100.0 36 ............................. GACGCTGGTAGTGGTGGGAAAGGCGGAAACGGAGAA 2572149 29 100.0 35 ............................. ATATTATACGGAATATCCGCTATAACTAGTTGTGC 2572085 29 100.0 36 ............................. TTTAAATATCTTAATGTGGTTATTGTTAGATGAAAT 2572020 29 100.0 36 ............................. GATATATGAGATAATGGACTTAAAATTGATACAATA 2571955 29 100.0 36 ............................. AGAAACAAAGGGTGTAGGTCTTACAAATAAGGGGGC 2571890 29 100.0 36 ............................. CCCGTTGGTATTGATAGGCTTTATCTAAATAATAAG 2571825 29 100.0 36 ............................. ATACAATCTGCCATTATGTCATTTTTTATAAATATA 2571760 29 100.0 37 ............................. TGCAGCAAGTCTTTATCTATGCTATTTGTAAATGTTA 2571694 29 100.0 37 ............................. TTTAGTTAGTACATATCTATAGTTCATCGCTTACCTC 2571628 29 100.0 37 ............................. TCTCTAGTCAATAAATATTCTTTAAATGGTCTATTAT 2571562 29 100.0 36 ............................. AGTAGAGTAGGTTATGAATTAGTAAAATAATTTATG 2571497 29 100.0 36 ............................. CTAAAGTATCAATGCAAGTGGGGAAATCTGTACCAT 2571432 29 100.0 37 ............................. AAATTTGAATGGTGAATTATGTCAAGGGTACATGAAG 2571366 29 100.0 36 ............................. TTTACACTTTATAAAGTTAATAGGATAATAAAATTA 2571301 29 100.0 36 ............................. AAGAAAACCTATTAAATATATGTAATTTATAAATTT 2571236 29 100.0 36 ............................. AAAAATAGCAATCACACAAGGACTAGGATACGCTTT 2571171 29 100.0 37 ............................. GTTAGGCACAGATGTTGCGGGGAATTTACAAAATCAG 2571105 29 96.6 36 .G........................... AGGATTCAGAAATGACTATTCAACTAAAATATATAT 2571040 29 100.0 37 ............................. CACTTTTAGAGGTGGCAGCACATAAGGAGATAATCAA 2570974 29 100.0 35 ............................. ATGGCTCAAATCTATATATTTCTTCACACCTACAT 2570910 29 100.0 36 ............................. TCTTAATACTGTTTTTTTGTAAGCTTCCCCTGGTGT 2570845 29 100.0 37 ............................. AGTGATAGAACAGTACAAAAAGATAATTATGTTTTAG 2570779 29 100.0 36 ............................. TAGAAAGGCTACTTTGCAAAGATAAAGTAGTGGGAA 2570714 29 100.0 36 ............................. TAGTGTTAAACTTGTAAGATTATAAGAAACGGAACT 2570649 29 100.0 35 ............................. ATAGGAAGATTTAATGGTACTTTTGACGGTAACGG 2570585 29 82.8 0 ...................T.G....GTA | C [2570558] ========== ====== ====== ====== ============================= ===================================== ================== 46 29 99.6 36 GTTTTATATTAACTATGTGAGATGTAAAG # Left flank : AAGTGTTTTAAATGATTAAAATTAATGATATAATGGTGGTGATATTTTGTTTGTGATTTTAACTTATGATATTGAGGAAAAGAGGATAAATAGAGTTAGAAAAACACTTAAGAAATATTTAACATGGACACAAAATTCAGTGTTTGAAGGTGAGATAACAGAGGGAAAGCTCCACAAATGTTTATCAGAGATTAATAAACTTATAGATAAAAAAGCAGACTCTATATATGTATACAGGGTAAAAATATCTAAAAATATTAGAAAAGATGTTATTGGAATAGAAAAAAGTTTTGATGAACTTTTTTTATGACTAAAACTGCATCGATGCAAACAAAGGTTCTAGGTGCGACAACACGTTGATTTTACTGTATTAGAATAGAAGTTTCTATAAAATAACAAAACATTATTCTAGGTTCACTGCAAAATTGTCTATTTAAGCACTATCAATGGTAGCGCCTAGGCCAGTAATACCAGTATGTTAATTAATTGTGATCTTTGGG # Right flank : TAGAATTGTGGACACGAAAAGCTGAACAAAGTAAAATATAATTAATAAGAAGGAGATGTTCAACAATGCCACAAAAAAGATACACAGAAGAATTTAAAAAACAGATTGTAGACTTGTACAATATGGGAAATAAATCCCTCACTGAATTAGAAGGTGAATATGGCGTATCAAAATCTACTATGAATGGATGGATCAAAAAACTATCACCAGTAAAGGTATCTGAAACAGAAACCATCACAATGAAGGAATATCAAGCACTACAAAAGAAAATGAGAGAACTTGAGTTGGAGAATGAAATATTAAAAAAAGCTACCGCCATATTTGCAAAAAAACTATAGAAGAAGTTGTAAACTTCATCTATAAGTACAAGGGAAAATATACAGTAAAAAGAATATGCAAAGTACTAAAGTTTCCTAGAAGCACTTACTATGAAGCTTTAATAAGAGTACCTTCAAAGCGTGAACTAGAAACAGAACACTTCAGAGAGAAATTACAAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGAGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //