Array 1 2960963-2962148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012599.1 Salmonella enterica subsp. enterica serovar Newport strain 0307-213 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2960963 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 2961024 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 2961085 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 2961146 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 2961207 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 2961268 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 2961329 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 2961390 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 2961451 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 2961512 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 2961573 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 2961634 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 2961695 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 2961756 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 2961817 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 2961878 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 2961939 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 2962000 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 2962061 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2962121 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2978818-2980433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012599.1 Salmonella enterica subsp. enterica serovar Newport strain 0307-213 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2978818 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 2978879 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 2978940 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 2979001 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 2979062 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 2979123 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 2979184 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 2979245 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 2979306 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 2979367 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 2979428 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 2979489 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 2979550 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 2979611 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 2979672 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 2979733 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 2979794 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 2979855 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 2979916 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 2979977 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 2980038 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 2980099 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 2980160 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 2980221 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2980282 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 2980343 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2980404 29 100.0 0 ............................. | A [2980431] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //