Array 1 27295-28731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011913.1 Corynebacterium ulcerans FRC58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27295 29 100.0 34 ............................. AATCGCGGCCACTAGAAGCCATGTGATTAAGTGC 27358 29 100.0 32 ............................. CAGGGGCAGCGGAAAGTGTTTTCTGCAGCACG 27419 29 100.0 32 ............................. TGCTCAAGCGATGCATTCAACTTCTGCAACTC 27480 29 100.0 32 ............................. TACCAGGCGGCTGCTAGGAACCCCCAGCGGGG 27541 28 96.6 32 ..........-.................. CGTTTCTTGGTTTGTGTAAGTAAGGGGAGAGA 27601 29 100.0 32 ............................. ACCCAATCGCAGGCTTCGCCGGCGGTTTCGCC 27662 29 100.0 32 ............................. TCGAGTTTCACGGATCCCTGTAGGCCCCATAG 27723 29 100.0 32 ............................. CCTTTACCTTGCGCAGAACAAGCTGCACAGCA 27784 29 100.0 32 ............................. AAGGGCATTCCACCTCATCGGGCAATCGCCTC 27845 29 100.0 32 ............................. ACCGGGATCAGGCCAGGTGTGAGCTTCGCGAA 27906 29 100.0 32 ............................. TTTAAGCCCGCGCAGGGAAAGTACCGCTTCCT 27967 29 100.0 32 ............................. CGGGTTTCCGCCGCATCAAGGCACTGCTTCGC 28028 29 100.0 32 ............................. AAGGCTCATTCTGTGGCTTTGCGCACCGCGTT 28089 29 100.0 38 ............................. CACCCCCGGCACCCTTACCGGCTGGGGGAACCGGAACC 28156 29 100.0 32 ............................. AGGTCAATAGTGGCGACAATCGGTATGGGTTT 28217 29 100.0 32 ............................. GGTAAGCGCCACAGGCGCTAGGGAGGCGGTCA 28278 29 100.0 32 ............................. GGGTAGCTACCGACGCTTTTGATATAGGTAAT 28339 29 100.0 32 ............................. ATGCTCTTGACGGTGCCGAACTCAGCCAGGTA 28400 29 100.0 32 ............................. ATGGCGGGCTAGGTGATATTTGGGATAAAGTG 28461 28 96.6 32 ..........-.................. GAATACGGATTCCGGTGCCACAAGGCCATAAT 28521 28 96.6 32 ...........-................. ATCACTATGGACGGTACGGTATTTATCCCTAC 28581 29 100.0 33 ............................. CTTCTGGGTCTGCTGACCATGAGAAAAAAGCTG 28643 29 96.6 31 T............................ CCGTTGGCGATGACGGAATAATCGGAATCAC 28703 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.3 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTGCCCCAATATGCGAGGGTGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTGGAACTTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGCCTTTCCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTTGTCCGCGGATTTCACAACACCATGATTGACCAGCGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCGCCTTCAGGCCACACCATAGGGGCACTACGCTGCACAATCGCCTTATAACCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGCTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGACCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCTGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 108388-107551 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011913.1 Corynebacterium ulcerans FRC58 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 108387 36 100.0 36 .................................... GCAGCTCTCCAGAGGCTCGCTCCGCCCCGAGATGGT 108315 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 108244 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 108171 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 108099 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 108024 36 100.0 36 .................................... GTGGGTGATGTGCTTTTGAAGGATCCCGAGCGGGCT 107952 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 107878 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 107807 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 107732 36 100.0 37 .................................... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 107659 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 107586 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 1987932-1990887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011913.1 Corynebacterium ulcerans FRC58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1987932 29 100.0 32 ............................. AGCGCAAAGTCGCTGCTCTACGCTATGAACGG 1987993 28 96.6 32 .................-........... AAGGTCCCCACACGAAAAATCAATCAGCGGTC 1988053 29 100.0 33 ............................. CTTCTGGCATCGCATAATCCGGAACCACACCAT 1988115 28 96.6 32 .................-........... TGTTCCGAGCTTTTTGAGCAGCTCGCGGTCAG 1988175 29 96.6 33 ............................A CATCGTCTTCAAGAATCGGGAGGGCATCCACGT 1988237 29 100.0 32 ............................. GCTCCTGAGATTGCCTTACCAATATCAGCAAT 1988298 29 100.0 32 ............................. AGGTGATGTGAATTGCGTTATCAACCTCGTAT 1988359 29 100.0 32 ............................. TTTTCCGACTCAAACGCCTTAAAGCGCCAGGA 1988420 29 100.0 32 ............................. CGGCGTGTGGGCACGGAGAAAGCATTCATTCC 1988481 29 100.0 32 ............................. AAGGCGCTCACGCCGCTGGTTGATGATGCCAC 1988542 29 100.0 32 ............................. GTTTACGAACTTCGTGGATGCCCGGGTCAAGA 1988603 29 100.0 32 ............................. CTGTTTATTCCGATGCCAGCTTTGGGGTACAC 1988664 29 100.0 32 ............................. GCTCAAGCAACACCGCTGTGACTTCGCGCTGC 1988725 29 100.0 32 ............................. ATCATGGAGGCGAGGCTTGACAAGCTTCAGGT 1988786 29 96.6 32 ............................T ATGCCACAGGGTAGGTTTGATATTCGTGGCGT 1988847 29 100.0 32 ............................. CGCACCTATCCACGAAAGGTTGGCAAGCAGAA 1988908 29 100.0 32 ............................. GTGGTGAGCTATCCGGCTTGGTGGAGCAGGCT 1988969 28 96.6 32 .................-........... GGCCTTAGGATTATCAACGGCGAAAATGCGCT 1989029 29 100.0 32 ............................. GTACCCAGCGGGTTGCCCTTTGCACTTTCCCA 1989090 29 100.0 32 ............................. GCTGTGTGTTTTTTGTGAAGGTGGGTGGCATC 1989151 29 100.0 32 ............................. TGAAGGAGCGCGATGTTCTTATTTCAAAGCTG 1989212 29 100.0 32 ............................. GCAAAAGCGGCTCAAGGCTCAGCTGATCAAGC 1989273 29 100.0 32 ............................. GTGTCATAAGCAGAAGACGCCCCACCAATGAG 1989334 29 100.0 32 ............................. TTTTTCCGAGGGCATTAAAGAGCTGGCGGAAA 1989395 29 100.0 32 ............................. GCTAAAAGCTCAGCCCCGCTTTTCCGAATCCC 1989456 29 100.0 32 ............................. AAAAATTTTCACCCAATCAGGTCCGCGTGTCA 1989517 29 100.0 32 ............................. ACGGGGGCTTCTGCGACGGATAAGCTGAAAGC 1989578 29 100.0 32 ............................. ATCCTCCTATCACCAAAAATAGGAGGGATCCA 1989639 29 100.0 32 ............................. ACGGTCCGTGGGTCGATTGACATCCACAACAA 1989700 29 100.0 32 ............................. CTGCGACCACCACGACTGTGACCCGTTTTTAG 1989761 29 100.0 32 ............................. GCGTGGTGGATTCATTTTCACGCCGCGCTATG 1989822 29 100.0 32 ............................. TGGCTGCTCACTGACGAAATAGGTCATGTATG 1989883 29 100.0 32 ............................. GATATGGTCGAGGTGGAGTGCACGTCATTGTC 1989944 29 100.0 32 ............................. AAGACTGCTTGATCATGCTCTACTGCCGCTGC 1990005 29 100.0 32 ............................. AGCTTGTTGGAAAGAAGACTGCGCACCTTGAA 1990066 29 100.0 32 ............................. ATCCTCAACGGTTTTGAGAACAGTTAGTGGTT 1990127 29 100.0 32 ............................. ACTTCTGCCTGAATCCAGTAGCCGTACCATTG 1990188 29 100.0 31 ............................. ATCAATGGCGATGTGATTGCCTACGACCTCG 1990248 29 100.0 33 ............................. CATCATCGTGATGGCAGTGTGGCGTGCAACGTG 1990310 29 96.6 32 T............................ GGATCACTAGCGGAAATCCGTGGAATCAGCGA 1990371 29 100.0 32 ............................. GGGCTAGAACCCGTGCGTCTTGATCCTGATGG 1990432 28 93.1 32 .................-..........T AGCTGTGCCCATAGGCGACAGTAGCGTAGCGG 1990492 29 96.6 32 ........A.................... CAGTTGCGGTCGAAGCCGCTGCAGCGGGCTGG 1990553 29 100.0 32 ............................. GCTGGTTTCGGTGTTGCGGCGAATATTGTTGC 1990614 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 1990675 29 100.0 32 ............................. AAGCTGGGCAACCCTCGACCCCGCTGGAAGCA 1990736 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 1990797 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 1990858 29 82.8 0 ....................A...AGC.T | A [1990877] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.0 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //