Array 1 51-1763 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQU01000042.1 Pectinatus frisingensis strain MB174 PFRB_65.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 51 29 96.6 31 ............................G CTTGCGGGGCGAACATTGATAACCGGCAATT 111 29 100.0 32 ............................. ATGTCGACTCAGTACGACATCACATTTACTAA 172 29 96.6 31 ............................T TCTGTTATTAATAGCAGCGTTATTTATGAAG 232 29 100.0 31 ............................. CCAGCGGTTATAGACAACTTAAATCTTAAAT 292 29 96.6 31 ............................T GAAACAGGGGATAATCCCTTGCTTGCAATAC 352 29 100.0 31 ............................. GTGTATTGATAATGTCTAAGCCGATATTGTA 412 29 96.6 31 ............................T GCCGAGTTACAAAGCTATGCAGCGTTTAGCG 472 29 96.6 22 ............................G CGCTTTGCCAGCCTCTACCGGT T [485] Deletion [523] 524 29 93.1 31 .....T......................T CCTTATGTGCTATAATCACCTTTGCATGTTA 584 29 96.6 31 ............................T AATGAAAATACTGCTTGGCTTAAAACCTATA 644 29 100.0 31 ............................. AACGCCTGTCATAAATCCTCCTACAAGCCGA 704 29 96.6 31 ............................T GCGAAGAGCAGCGGCGAGAGGGAAAGCACTG 764 29 100.0 31 ............................. TCAGCTAATGTATGCAGCTTTTTAAGATTCA 824 29 96.6 31 ............................C ATATCAGCGTTACGCCGATGCCGAGCGTAAA 884 29 100.0 31 ............................. AAAAGAGGAACGACATACTATTTCGTCAATA 944 29 100.0 32 ............................. CAATTTGTTATCCGCCAGATGATCAAGAATGT 1005 29 96.6 31 ............................T CACAACTTTTTTTGTAAATTATATGACTGTA 1065 29 96.6 43 ............................G ATTGAAGCGGTTTCATGGCTGGCATATGAATGTTATCCGCCGC 1137 29 75.9 30 A.AGG.GN....................T CTTTTCCGTGTCTGAAAACTTTTCTCAAAT 1196 29 96.6 31 ............................T TTCATATCCTGCAATGTCAGATCGGATTCGC 1256 29 96.6 31 ............................T TTTGGCATTTATCCCTGCAAATTGTTCAAAA 1316 29 100.0 31 ............................. TCCCGAAAAGGCTATAAAATAAGCGTTGATC 1376 29 100.0 31 ............................. CTTTTGTTCTTTCGTTATATATAGTATAGTC 1436 29 96.6 31 ............................T AGCACAAGATACCTTTGTTCTTTGTAGCTTT 1496 29 96.6 31 ............................G CTAATTTTTCATATTTTTTAATTAAGTCATA 1556 29 100.0 31 ............................. TATTTATTAATCTTGTAATTCAATACTAATT 1616 29 100.0 31 ............................. TACAAACATTATTATCAGCTCTCTTCGTTTA 1676 29 96.6 31 ............................T ACGCTTATATTTATCTGCGTCTTCAGGTGAT 1736 28 72.4 0 A.....T..T.......T..-..CA...T | ========== ====== ====== ====== ============================= =========================================== ================== 29 29 96.2 31 GTTATCCGCCGCATAGGCGGCTTAGAAAA # Left flank : GCATAGGCGGCTTAGAAAAGTATAGAGCGTCAGATACTGATTCCTTATATG # Right flank : TTTCATGAGTGTGTGGCTCACTTTTTCGTTGACGTTTATAAATATAAAAAAATACGATGTAATGTATTATTATAAGTACATATAAATTGTAATATACTACAATAGAAAAAATATATGGGAGGTAATATATTATGCTGCCAAATTCCGATAGACGGAGGCCGCATGGGAAGGTAAAAAAAGAAAGTGCATCGGGGATTTTCCCGGTGCACTTTTTAATTAATGTGTCCAATATATTTTGAAGTTGGATTAAATTTGTAAGTCGTAGTTTTTAAGTAAAAACTCTCTTTGGGCATTTAGATGTATTATCATACCGTTTTTGGCACCGGTAGCATCACCTGCGGCTATAGCTTTAGCTATCTGACGATGCGTGATGACCGTTTCCTGGCACAGAGAATTATCCGTTATGAAGATATTTTTCTTTATGGAAGCATGGATTATCTGTGTTATTTTATAGATGATTTTATTGCCGCTGGCATTGCCGATAGCGGAGTGAAAAAGAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 82682-84158 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQU01000032.1 Pectinatus frisingensis strain MB174 PFRB_49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 82682 35 100.0 39 ................................... TATAATCGTGTTATCATTAAAAGTAAAGCTATTGACAAC 82756 35 100.0 37 ................................... AATCGACAAATATGCTTAATGTACCCTGCTAAATCAT 82828 35 100.0 37 ................................... TTAAAAAATATAAAGGTGTTATTGAACACGGTTATCC 82900 35 100.0 39 ................................... TATGCGCTTGCGAATGGAAGAAAGGAACGTAACAGAAGA 82974 35 100.0 37 ................................... GTTATTACTCTCCTTCTTGCATTTTTTTGGATTTCTT 83046 35 100.0 35 ................................... AACAAGGACACAACGTATAGCGTCAGTTTTTCCAC 83116 35 100.0 37 ................................... TTAAAAATATTCATCTCTTTTTAAATTTACATTTTCT 83188 35 100.0 38 ................................... TACTTTAAACATTTAAAACGCTCCTTTAAATTGTTTTA 83261 35 100.0 37 ................................... AACTTTTATAATAGTGGATACAGCTCCACCTATTAAC 83333 35 100.0 37 ................................... TCAGTTGTTTATCAACGATTATTGCAGATACAGTATA 83405 35 100.0 35 ................................... GTCGTACAGTGCGTTGGTAGAAACAATGTTGCCGT 83475 35 100.0 35 ................................... AAAAATATTTTTGAAATTGCGGCAAATTGGCACGA 83545 35 100.0 37 ................................... TATCTCCTGCTGTTGCGGCTCCCATATATCCTGCTGT 83617 35 100.0 39 ................................... TATCTGACAGTATTTCTCCTACTGCTTGCCAACCAGATT 83691 35 97.1 37 .................T................. TAATTTTTTCTGTACATCCTTCTTCATCAATTTCCGT 83763 35 100.0 33 ................................... AAGTCATTATTTTCACTGGCAATATTATTTTTT 83831 35 100.0 37 ................................... TTTTTAACAAAAAATACTTATAATTAGCATTTATGTC 83903 35 100.0 43 ................................... TTCTAGGTCGATAACTTCAACATCGCCGAGGTATTCGTCGGCC 83981 35 100.0 37 ................................... TTAGCTAACATTTCGATGATGTTAGCTTTTAGCTCTT 84053 35 100.0 36 ................................... ATCTGACTCATTTCTAATTTTGTGCCTGCAATTCTT 84124 35 94.3 0 ..............C.............T...... | ========== ====== ====== ====== =================================== =========================================== ================== 21 35 99.6 37 AATAAAAACCATTAACCCCTGTAGGGGACGAAAAC # Left flank : TTATTCGATAAAAGTATGCTATAATAAATAATTATGGTAGGCAAATAAAATGGATAATAATGCAGATGAAAATGAATTTGTTGCTATTGATGATAGACGCTATATAATACTGGCAATTTATGATATTGTCAACGATAAGCGCAGAAGTAAAATGGTCAAATGTCTTGAGGGGTTCGGAGTCCGAGTGCAAAAATCAGCTTTTGAAGCTTATTTGACGAAAAAAAGCTATGAAAAATTAATGAATACAGCAAGCCATATAATTGATATCAAAGAAGATTCGCTGCGTGTATATTTGCTTGCAAGTCATACTTCTGTGCGCTCATGGGGCAAGGGGCATGATCATGTTGAAGATGTTATAATATTTTAATCCGCGCCGCACTGCTGATAGCAATGTTTTTAAGTTGATTTTTTAGGAGAGAAGCTTATTGAAAGCAAAAAAAATGATCCGCGCCGTAAACAGACAAACTGATTCAGTATTGTCAGGCATCCCAGGGCACAGT # Right flank : CTCATATTCGGATCCGTCAGATCCCCAGCTTTCAATAATAAAAACCATTAACCTTGAACGAACATTTCCATTTCATGAGGATATATGGGTAAAATTTAAGAATCAATAAATTTTTTGACAAAATAAAGAGACTGCTACACATAAACTGATATGCTCCCCCTATAGGAGACAATGAAAAAATAAATTGTCAACTATAGAGGGATTTCTATGTCAGTTAAAACTAAAGCAACTCCTGAAGACAAGATTAAACTGGTGGAACAATATATGTCTGGAGAAATTAGCCAGCATGAGATCAGTCGAATTACTGGATTAATGGTCGCATCGATTCAGGATTGGATATGTAAATATAAAGCGGAAGGATCTGTTGTTTTCTTATCAACGAGTAAAAATCGGAAATATACGCCTGAACTTAAGGGGAAAGTGGTAAAAGAATATCTCTCTGGAAATGGGAGTTTATTAACGCTGTGTGAAAAATATAAAATTCGTTCCAAGACTCAAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAAAAACCATTAACCCCTGTAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 52-379 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQU01000035.1 Pectinatus frisingensis strain MB174 PFRB_66.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ ACATCTTTGATCTTAGCATTATTTTCAATCAG 112 28 100.0 32 ............................ AATAGTTATAAAGGCAGAAATTACGATATTGC 172 28 100.0 32 ............................ TGACAAGTGGCCTGTATGGTATAAAGACGGAC 232 28 100.0 32 ............................ ATATGGCTCATAACTCTCCTCCCCATTGCTCC 292 28 100.0 32 ............................ ATGGATATACCGGAGATGGTAGTAAAAAAACT 352 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTATCCGCCGCATAGGCGGCTTAGAAA # Left flank : CGCATAGGCGGCTTAGAAAACTGTAGACGGATATACTACTTACCTAGTGTAG # Right flank : TCAAAGTGGAGACACTATCGTAACAGAAAAGCGTTATCCGCCGCATAGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATAGGCGGCTTAGAAA # Alternate repeat : GTTATCCGCCGCATAGGCGGCTTAGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9061-10102 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQU01000006.1 Pectinatus frisingensis strain MB174 PFRB_67.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 9061 29 96.6 31 ............................T TTTACAAGTATATGCTTGATATGCAGCGCGT 9121 29 100.0 31 ............................. TTGCAATTTAACATCAAACGGTAAGGTCGAT 9181 29 100.0 31 ............................. GATGTATAAGCTTATGCTTGACGGGCAGATT 9241 29 100.0 31 ............................. AGCAAAATATCATCCGGTGTTAGTAAAAACA 9301 29 100.0 84 ............................. ATAAAATTTAAAAAAATGAAGCATTTTATTAGNCGCATAGGCGGCTTAGAAATACAATAAAACACTAAAGCGGACAAAGTTACC 9414 29 96.6 31 ............................C ATATCCCGCAGGGTATAAACGCGATACAAAT 9474 29 96.6 31 ............................T TAAAAAACATTGAATATGATAATTTAAGCCA 9534 29 96.6 31 ............................G GACAATAGAAAAATTTCTCCGGAGCAACGCA 9594 29 96.6 31 ............................T TTGAAATTTTCTGTATGAAGTGTTAATATTT 9654 29 100.0 31 ............................. TTTCGTTATTATTAAAGCTAATACAACAATT 9714 29 100.0 31 ............................. AATATTTTATTGACGGAACGCCTAAGGCTGC 9774 29 100.0 31 ............................. AGGAAGGTGAGATGATGAGCGATTATTTAGT 9834 29 100.0 31 ............................. GTAAGTTCTGAAGCTTCATCGGGTGACAATA 9894 29 96.6 31 ............................T TTGAACAGTACGACAAAGGGCAGAAACGTAT 9954 29 96.6 31 ............................T ATATGCGCCGGAATATATATCTCTAAAGCAT 10014 29 100.0 31 ............................. TGATAGTGTTGGTGCTCTGCGTTGTGTATGT 10074 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ==================================================================================== ================== 17 29 98.4 34 GTTATCCGCCGCATAGGCGGCTTAGAAAA # Left flank : GAATAGTTTAAATTTATCTAAATGGTTATATAGGCTTAATGATTATATTCATATAACCAAAGTAAGAAAAATACCGGATAGAATTAAAGGATATGCTGTTTATAAACGTTTTAGGGAAAAAAATTCTATTAGTAAAATAAGAAGGTACGCTGATTATCGCAATATTTCCTACAAGGAAGCTCAAAACAAATTAGCAATAAAAGAACAAGAGTGTAATTTGCCCTATATTCAGATGAAAAGTTGTACAAATAATAATAAGTTTAGTTTGTTTGTACAAAGGATTAAAACAGATGCTGTAATTAATTGGAAATTCAATTTTTATGGATTAAGTAATTCATCGGCTGTGCCGGAATTCTGAAATAATCTATTTTACCATTATTTTTTCATATATGAATAAATCCAATATTATCAAGCTTTTTGTCGTGAGCGTAAAATTTTGGTATTTTTAAAATAATTGCCGATAATACTGTAGTGATAGGGAAAATTCATTACTTATTGCA # Right flank : TAATACCAAGCGATTACAGGCAATTACCGAAGTTATCCGCCGCATAGGCGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //