Array 1 8588-5379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKML010000002.1 Listeria monocytogenes strain LM19_6 contig2_denovo_LM19-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8587 36 100.0 30 .................................... GTATAAAGCGACGCACATATTTGACGATGT 8521 36 100.0 30 .................................... CCTCCCGCTATGAATCCATCGTGACCTTCT 8455 36 100.0 30 .................................... TTGCAGTCTTCCCATTTATTTTGACTGCCT 8389 36 100.0 30 .................................... ATTACCTTTGGATTACAACGCATTGCGTGT 8323 36 100.0 30 .................................... TATCCGAGATAGCTTACATCACATCTGAGC 8257 36 100.0 30 .................................... TGGGCATTTGATGCAGTAAAAGCGAATGAT 8191 36 100.0 30 .................................... TATTATTCAACGTGCTGAACGAAGCAAACA 8125 36 100.0 30 .................................... GATTAAAGTGCTATGTAACTTAGATTTGAT 8059 36 100.0 30 .................................... TCAGTCACAATGGTTACTTCCTGTTCGCTA 7993 36 100.0 30 .................................... AATTAAACGAGCATTACAATAGGCCATTCC 7927 36 100.0 30 .................................... TAAGCAAGTTGCAGATAAGAAAACCATGTC 7861 36 100.0 30 .................................... TGATTATGCGCAAAAAGCTAGCGTTAAATA 7795 36 100.0 30 .................................... TTGTGCAAATTTAAGAGGTGCAAATTTAAG 7729 36 100.0 30 .................................... TTCGTATCTAGATAGCTTGTAATCATTTCC 7663 36 100.0 30 .................................... CATCGAACTCCCCGTTAGTAGACATAGTAT 7597 36 100.0 30 .................................... CTAATTATCCTGAAAAAGATTTGTTTAATG 7531 36 100.0 31 .................................... TAAACGTTTTTGCATCTAACCATAAAAGGTT 7464 36 100.0 30 .................................... AGATTACTTTTTCACTGTTTATATGCGCGA 7398 36 100.0 30 .................................... TTGGATTAGCAATGGTTACTAACATGTATT 7332 36 100.0 30 .................................... ATCAAACTTGATAGCAATATAAAGCCTGTC 7266 36 100.0 30 .................................... TATTCCATCGTTTCGCGATAACTACCGTCT 7200 36 100.0 30 .................................... CTTTATGCAATTCAAAGGAACATTAGATGC 7134 36 100.0 30 .................................... AATAACTTGTCATTATTTATCATCCTTTCT 7068 36 100.0 30 .................................... AGTCTGAATGTTGCAACTGCTACACCGCTT 7002 36 100.0 30 .................................... TTATTTTATGTTTTAGATTAAAGCCGAGCA 6936 36 100.0 30 .................................... TTTTTCTGCGGCACTTGAACCGTCTAGCGC 6870 36 100.0 30 .................................... ATCTAACATTGTTTTATTAACAATTTGAAT 6804 36 100.0 30 .................................... ATCTGCATTCGCAATCATACTTTTTTGTTC 6738 36 100.0 30 .................................... CGTTAATATTAAATACCTCTCGAAGCGCTT 6672 36 100.0 30 .................................... TTCAGACTGTAACGGATACAGAGTGCAATA 6606 36 100.0 30 .................................... TGGTGCAAATTTAAGTTATGCAGATTTAAG 6540 36 100.0 30 .................................... GAAGCGATTGTTTTGCAACAAATTCACTAC 6474 36 100.0 30 .................................... TATGGAGTAAATTAATTTCTAAAAATGTAA 6408 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 6342 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6276 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6210 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6144 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6078 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6012 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5946 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5880 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5814 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5748 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5682 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5615 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5549 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5483 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5417 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5382,5385,5390] ========== ====== ====== ====== ==================================== =============================== ================== 49 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1205714-1204385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKML010000001.1 Listeria monocytogenes strain LM19_6 contig1_denovo_LM19-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1205713 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1205647 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1205582 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1205518 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1205452 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [1205443] 1205384 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1205319 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1205254 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1205188 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1205124 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1205059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1204994 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1204929 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1204866 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1204803 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1204737 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1204674 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1204609 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1204543 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1204478 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1204414 29 93.1 0 .......................C....C | A [1204389] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //