Array 1 225076-223314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000002.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 225075 29 100.0 36 ............................. GAATATAAAAAGAAGAAAGCGGCGGCAGTTATAACC 225010 29 100.0 38 ............................. TACCCGAAGTAGATCGGTTTGGTGAAGGTGTTTCAGAA 224943 29 100.0 39 ............................. GCGAAAACGGAACCCCCGCCACTATTAATTTCAACGTCA 224875 29 100.0 38 ............................. ACTCGTTCCGTGTATGCAGGTGTCATGCTTGGTTCGAT 224808 29 100.0 36 ............................. GAATAATCTGCCGCCACGCATATAGGTGAATAAAAA 224743 29 100.0 37 ............................. AATAAAGTTGTAGTTCTCACAAGCTATGTGCAATCCC 224677 29 100.0 35 ............................. GGAAAAGACAGCGTAATTCTTGCCGTCCCAGATCC 224613 29 100.0 39 ............................. TAGCAATCCAAAACGGTGAGTCTCAAATATGCACAATAG 224545 29 100.0 37 ............................. ATACGATTACGATAATCAGTCGTTAGGGGTCACTAAC 224479 29 100.0 39 ............................. TGAAAAAGTCAGAAGTTGAGGAGATCAAAGCCTTTCTAT 224411 29 100.0 39 ............................. AGTAGACCTAAGCGCCCGTGTTCTTATCCTCGTTGTCCA 224343 29 100.0 40 ............................. TTGAAAGTGGGACCATGGTGGAATCACTTTTAGGGTGAAA 224274 29 100.0 38 ............................. AGTATTCAACAATCAATTTACCGTTGACGAGTTTTATG 224207 29 100.0 39 ............................. TAAATAGTAGCAGCTAATGCCGCTTTCCCATTCGCCAGT 224139 29 100.0 37 ............................. ATACCTAAGAAAATGCCAAACGCCGGACCCTTTTGGA 224073 29 100.0 36 ............................. TTCAGATAGAGATAAAAGGATATACGAAAAATCCGA 224008 29 100.0 38 ............................. CCGACACCAAACGGACAATGACGATGCTAGACGCCACA 223941 29 100.0 38 ............................. TAGCTTCTTGGAATGGACGTGTTGTATTGATTGATGAC 223874 29 100.0 37 ............................. ATAACAGACTACTTAGCCGTTTAACAATAGGGTTAGT 223808 29 100.0 38 ............................. TCGACACGTTGAAAAGAAGTGAAGGAACGTATGCTACA 223741 29 100.0 37 ............................. TTGATTCTAACAGCACACGCCAACACACCAGACTCAA 223675 29 100.0 37 ............................. ATAGCAGTGGCAATATATTCCTTTTTACTCATACCCC 223609 29 100.0 36 ............................. TCGCATCGGACAATTGACTGACGAATTAACAAGGTC 223544 29 100.0 39 ............................. TGATGGTGGCGGTTCTAGTATGTTGTATACGAACGTACC 223476 29 100.0 39 ............................. GACAAGTTTAAACGCAAGGTAGAAGAAGAGAAGCTAGAG 223408 29 100.0 37 ............................. TTCTGAGTGTAGTGATGGAGAAACTGAAACTCCCCAT 223342 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.9 38 GTTTTATTTGAACGTAGTGGGATATAAAG # Left flank : GAAAGCGTGGTGGTAAGAATGTTTGTAATTATTACTTATGATATTGGTCAAAAGCGTGTAGGTAAAGTGTGTAAAAAGTTGCGAGAATACTTGGATTGGACACAAAATTCTGTGTTCGAAGGTGAGATAACAAAAGGTTTACTGTCAAAATGTTTAAGTGAATTAAATCATATTATGGACAAAAATGAAGATTCACTCTATGTTTATCAAATCAATAATCCTCGAAATATAAAAAAGGTGGTTCATGGACAAGAAAAATCTCCGATTGATTTATTCTTGTGAATATGTGTAAAGTTGTAGTAGGGGAATTGATGAAATTGCAGTGAATCGTTTTATTGATCAATTGGCTTTCATGCCATATATACCAACGGATTTCAGTCATATTTTCAAGTATGGCAAAAACACAACTGGAAGCTTACTGCAAATTAAGGTATTATGATAGTATCAACATTCTTTGAAAATGCTTATATATCAAGGGATTTAGCAATTTTGATTTTAGG # Right flank : TCTAAAAATCGCCGCTCGTGAATTACTCACGCATGACAAAATAAGCGGCGAAGTCATTAGTGTAAGCTCTTACAGTACTCTTTCGTATCTCAAAGTTCATGCTTACATAGAAATAAGTCTCAAAATCAACTTCATTTGCTCCTCTAATTGCTCATTCTTTTCATGCAGCTGATTTAGTGTCTGCTGCTGATTGCCGTTGAACAAAACGAGTACTTGATTATCATTTAACCGTTCTAACACCCGATAGCCTACGCTAGCTTTAGTAGCTATTCCTTCGTCATTAGGTAGACAGTATTCTCCTACGTTGCATGTTCCGTCATCTCGTACTCTAATTTGTCCTATTAGACCTACAACTTCCCATTCAGGTCGTTGCATCCTTGGGATGTAGGTTTTATTTTGATCGAACGCTGGATTAGGAATGAGCCTCCGTTTCGTTTGGGCAGGAGTAATTTCCTTCCCATTAGCATCGATTACTGCTTCAACCTCTATATCTTCATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATTTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 185313-185612 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000001.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 185313 30 100.0 37 .............................. CCATGCTTTGCAGCAAAATAGAAACACGAGGAAAAGA 185380 30 100.0 38 .............................. GTTCAACTACGATGTGAATTCCTAAAAAATAAAATACA 185448 30 100.0 35 .............................. CCGCCCGTCTTCTTGCTTTAATAAAGTAAATAATA 185513 30 100.0 40 .............................. TATACTCAGTGTTTCCTATTTCATAATGAGCGTTAGACGA 185583 29 93.3 0 .......................-.....A | C [185610] ========== ====== ====== ====== ============================== ======================================== ================== 5 30 98.7 38 GTTTATATCGTACCTATGAGGAATTGAAAC # Left flank : ACGTATTTATTGTAGAGGCAGTTAATGAAAAAGAAGCTTTGCGAAAATTTGTAAGAGAAAGAGGTCATGTAATAGGTTTTTTTGAAGCTCATGCTCGTGAATTAATACAAGAAAAGGAAAAAGATAGATTTCGGTATATTAAACATAAAGAATATGCGGAACAGTATATAAATTACTTTATGAAACAAGAGAACATAGAATATTCAGATGAACTGTTTGATTCCGTCTATGAAGATTGTGATATATATTACGTTATAAACATGACAGAAATTTATTATGGTTAATTAGTATGTCAAAGAGTCAGGAAATGAAAATGTCGTCGACCTCCAGTAGTGTAAAAATCCCTGGGGATCGACGACAAAATGAAAATAAGAGTAAATACGTGAAAATAGGAGAAAGAGAGAGTAAGGAATGCATATTTTGATTGTTTGTTTTTTTAGAAAATGAAGAAGGAGTTTTTTTGTTATTGTAGAAGTATTATAAGCAAGTGCATTTTTGGG # Right flank : AGGTTGGTGAGTAAGTGAAAGTGGAGGAAAAAGACGTGAGCACAGAAATACAACAATTGAAGGACAGAATACAGAAATTAGAAGATGATATGGAAATGTTACAACAAGTAACCCAAACCCCTAAGCGAAATAGTTTTATAGTAGGTTTTACATCGGGTTTTTTATGGGTAGCTGGTGTATTCGCTGTATTTATTATTTTCGGTATGCTGTATAACTGGCTTGGTTAATGCTACATTCCCGAATGACCGCCTATTCCGTTATTGCTTTCGTTTGCTTAAAATAACGTGTTAAATAGACGAAGGTTATTCGAAATTAAAGCAACAAAACAAAATGAATGAACACAACAACTAGAAGAATAAAGTGCAATCTATATCCATGGCGAGTAATGTTTACCGTAACACTGTTACAAAGATACTCAACGAAGTAAAGGAGTCGGCAACATGAACAATATCGTCGTTGTAGGTAGTGCTTCCATTGATTTAGTGACGGTATCTAGCAAG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 196621-196854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000001.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 196621 30 100.0 40 .............................. GCTTTTAACTTTGATGCTTCCCTTTTCAAGAAGCGGTTAA 196691 30 100.0 37 .............................. ATAAGTCCGCGGTTGATATATCCTTGTAAATTCTTTT 196758 30 100.0 37 .............................. TTATGTATCTCATATATGTTCTCAACAAAACGATATG 196825 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 38 GTTTATATCGTACCTATGAGGAATTGAAAC # Left flank : TTTAACTTTATATTTGAAAAAAGAGTTTGTAATAATCAAAGTTTTTTCTGTAATATTGATCTATTGTATAAGTGCAGTTTTTGCAGCGAGTATGTTAGAGTTTACTTTTTATGGAAATATACTTATATGTGTATTTTTTTCATTGTTTGCATGGTTACATTTTATTTATTACATAGCAATAAGCAAATCGTGGTTGAATTAGTGCCGTATCTGTTAAAATTCAGGGGAGATGGTCTTAATCTTCGTAATTTTAAGGGTATTTCATTATAAATGCTGCATTTTAATTAAAAATTAAAAATTAAGTCCTCTTCAATGTCGTCGACCTCCAGTAGTGTAAAAACCCCCGGGGATCGACGACAAAATGAAAATAAGAGTAAATATGTGATTATAAAAGAAAACGGGAGGAAAGTTTGAATAGATTAAGAAATCATTTTTTTGAAAAGTTGAAGAAGGAGTTTTTTTGTTCATGTAGAAATATTATTAGCATAAGCATTTTTGGG # Right flank : CCTAAAATAATTTATGATTTAGAAGTGTGCTGAAAAATCTGCACAATTCTATTTTGATTATTTTAGTAGGTGATATTCTATGAAAATTATTTTCCACTTAGTAAATTTTATTATAATTAGTTGCTCTCTGTTTCTGGTTATATTTTTTTGGAGTGATTTTATTGACTATGAATACCCCATTTTGACATATATATCGTTAGTTTTCTTTTTACCTTACTTTTTTATCATCTTTTTTTCGAGCCCTTGTATTTTTTTAACTACCACTTTTAAATCGAAGTTTAAAAGAGCTAGAATCTTTCTTGTAATTATCATTTATTTACTGAGTACAGTTTTCGCAATGAACAGTTTACAATTTTCTTTTTTCGTAGATATAAAAATATCTATACTCTTTTCATTGCCTGCATGGCTACATTTCATTATTTACATCATAATACACAAAAAGTTGATGCAAGATCCGTGTTCCCAAACTAAAAACGATTAATATACTATCATATATACGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 199975-200826 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000001.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 199975 30 100.0 36 .............................. CAGGTACGACTATCAACATCGCGATGACCATTGATA 200041 30 100.0 41 .............................. CCGAGTCCCATGTCTAAATAAAACGCAACTCTATTGTGTTG 200112 30 100.0 40 .............................. TCCACTGATTTTTTGAGATGATCAATATCTTCATCTTCTA 200182 30 100.0 35 .............................. CATATTTAGTAGTCGTAATTTTTTTAGTAGGTTCC 200247 30 100.0 39 .............................. GATGGTGCAACAGTATTCGTGCCAACTATTGGGGAATTT 200316 30 100.0 36 .............................. AGTGAAAACTATACGAACATAAGTCAGTCAAAAAAC 200382 30 96.7 36 ...T.......................... TTTAAACGAATAGAGATAGCATCTATTAAGTCATTA 200448 30 100.0 37 .............................. ACCTTTAGTTTTGTGTCCCTACCGGTCATATCAACGT 200515 30 100.0 40 .............................. TATTCTCTATCTGACAATATTTGCTCCATATTTTTCACAG 200585 30 100.0 42 .............................. AAGTCTGCTTGTGCGCTATTGTATTCTGGTCTTCTATCACTC 200657 30 100.0 40 .............................. CAAAATCTCTGTTCAACTCTCTTAATTCTTCTTTAATTTC 200727 30 100.0 40 .............................. TTGATAGTAAGAAGCATCTTCACCATCAATAGGTAAAATC 200797 30 86.7 0 ......................T.AC...T | ========== ====== ====== ====== ============================== ========================================== ================== 13 30 98.7 39 GTTCATATCGTACCTATAAGGAATTGAAAC # Left flank : TAACGACATTGTACCAGAACAGAGGAGGGGCGACTTCTTCTATTAGTGAATTTGATGTATCTAAAATAGCAGAAAATGATTCTATATCAAGCTTTAAAGCATTGAATTCCTATGAAAATGAAGGGTTTGAAGAAGATCAAGTTGCTATTTGGGGTTATGTCGCTTCAATAAATAGCATCTCTGGCAGAGTGCTTGAACAAGATTTAAAAAGCATGGCAACACAGGTGGATTTTGCGATTATAGTGACAATGAGTGTGAAAACAGTTGAAGAGTAATATATGTAAACATCTATTAATATTTAACCTCGTTAAAATGTCGTCGCCCTCCAGTAGTGTGAAAATCCCGGGGGATCGACGACAAAATGAAAATAAGAGTATAGATTAGATATAGGGAGTAAACAAGAGTAAAGATCTCATAATCTTGATGTTGATATTTTTTTAAGTATGTAGAAGGAGTTTTTTTGTCTATGTAGAAATAGTATAAGCATAGGCATTTTTGGG # Right flank : TAACATTCGATGAAATTAGAATCGTAATTGTTTTTGTTCATGCCTGTATCAACAATCTGTAAGACAAACTAATGTTCTACCTATTATGTCCCTACTACTCAAAGTGGGGATTTTTTTATTGTAATTTATAACTTTTTGTATGAAAAGATCGATAAAAGAAGGAATTTCCAATAATTTATCAAATATTATAATGTATCTTTGATTTAATATAAGCTTAAGGAGGACTTGATGATCTAAAAAAGCGGTTTTACGCTCACCAAAAAAAGATGGAAACTGATTTATCATTACACAGAGGGATTTTTAATCATCCAAACCATTCTGTTCGGAAGATAAGTGGAGAGAATTTTTTGAATCGTATTTGCCCCGTAGGGGATCTGTTAAATGGAAAGCAGAAACGATGGAATTGCAGAGAAGCACGAAAGATGAGATATTAATTTTCTTCTTTCTAAACTTAGTGAATGATTTGCAAAAACGAGGCACCGTACCTGCAATAGATATAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 212628-213194 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000001.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 212628 29 66.7 100 .AGT........GA...G...-.G.A...G AGAGTAAAGATCTCATAATCTTGATATTGATATTTTTTTAAAAATGTAGAAGGAGTTTTTTTGTCTATGTAGAAATAGTATAAGCATAAGCATTTTTGGG 212757 30 100.0 40 .............................. TTCTTCGTCCCTTTCGTATTCTGCCGCATGCCTACGTTAG 212827 30 93.3 35 ...TG......................... TACGTACTTAAATCATTGTCGTGCATTCTGTGATT 212892 30 100.0 39 .............................. TGTATCCCCCTGTTTGTTTATCTGCAATCGTTAATGCCG 212961 30 93.3 38 ...T................A......... AAGGATTCAAAACTGCAAAGTGAGTTCGGATGTGTTGA 213029 30 93.3 35 T..T.......................... AGTCTTGATATTGCAAATGTTTTTGCAGGCTCTGA 213094 30 96.7 39 ...T.......................... TTACGTTCTTCAAGTGATTGTAGATAAAAGATAACAGGT 213163 30 90.0 0 .......................A....TT | AA [213183] ========== ====== ====== ====== ============================== ==================================================================================================== ================== 8 30 91.7 47 GTTCATATCGTACCTATAAGGAATTGAAAC # Left flank : TTAAATGTTCCTGTTACAATTCCCCCTTTGTCTCCTAATACATTCAACAGCGTTCTACCTTTTATGTTCGGATACAGAGGTGTTGCTTTGTCCGTAGTAATCACGTTTAGCCCAGTCTCTAAACTGGACGTTGTTTCGTAAGCTTCTCCTAAAACTTCATTTATACCGTCAATTTGTTCTTGGAGTAACTGCTTTTGTTGCAACAACTCATCTACCGATGCTGCATTTTCATCAATAGCATCCCAGTTGTAATTAAAAGATTCTAGTTCGACATATTCATTGATAAGTGGTTTTTTGATCCCTAATTTTGGTGTTTCATTTGGCATCGTCAATCTCTCCCTTTTGTAAATGTTATCTACATAAGAGGGTGACGAACAACTAATTTGACACCCCAAAGAAGGAATTTTAGTATTTTATTTTTAAAAGTGAACTTGACTATATGTGTCGTCGACCCCCAGTAGTGTAAAAATCCCGGGGGATCGACGACAAAATGAAAATAA # Right flank : TCACCCACTAAGGAGCAAATCTATGTACAAATATATCTCGCTTCTATTCTTTCTGATTCCTTTTACATCGTATAATTTAGCTTTTTGGTTCAACTATAATACAAAAATGAATCCCATCCATTGGACATTATTGTTATTAGCAGGCTTACTGTTTGCGATTATCAGTATGAATAAAAAAGAACAAAAACTATTATCCTATACGTCACTTATGCTAAACACACTGGGGCTGCTTTTTTTATTTATTATTTTTGTCGTTATGACATTTTTTTGGAACACCCCATGATGGATAATATCAAAAAAATAATCACTAATATCCCTGAATCACCTGAAAATCGGAATCCCGAAAACTTTTACTTAGTAACCGTGAATCCTCTAAACCATGCCGACCTAGTCTTATATACGTAAGGTTCAAACCACTCACTCCTACCTAAAAAGCAATAGGAGGCTTTTCTCATGCACATCTCACTAACCACCAACATCAAAAAACAACCAAGCCGATG # Questionable array : NO Score: 7.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:-0.86, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26510-26878 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000005.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 26510 30 100.0 39 .............................. TTCACAAATTTAACTCCTCCTTAACCACTTCCGCCATTT 26579 30 100.0 37 .............................. AGAACCTCAATCAGGCTTGATCCATGATCATCGTTAA 26646 30 100.0 38 .............................. TTGGAATAGCCCTTGGCGTTATGTTTAATTTTAGATAT 26714 30 96.7 37 .........................A.... TCCAGAAATGTTTGATAGTCTGAATCGTCAACACTCG 26781 30 96.7 38 .........................A.... ATAATTCTTTTTGTTTCATACTATCCCACCGTTTCCCC 26849 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.9 38 GTTTATATCGTACCTATGAGGAATTGAAAC # Left flank : CAGGTATTTATGCAAGAGCAGCAGAGAAAGGTACGTCATTTGAAGATGATTACATCGCTCTATTGCAGGATACTGCAAGCATGAAGGTAGAAGATTTAGCAAGCAAGCATTTGGGTGTAGATTTGACGAAGCCAGACTTCTGGCAGTCTGCATTAGATATTAGTTTGGACGATGTAGATCAATTTTTGAAGCTGTAATAAGGTTGGAAAAATGATGATTTGAGCGTGGCTATTTTTTTGATGAAGGTGGAGCCATGAGCTGTTAAAATTATGGAAAGAGCGGGACAATGTTTATGACATTGCATCCCGCTTTTTTGTCGTCGACCTCCAGTAGTGTAAAAATCCCTGGAGATCGACGACAAAATGAAAATGAGAGTAAGAGAGGTAGAAGGAGTAAGGAGGAGGTATTGATTTGTTTTTATGCTAATTGATGTTTTTAGGAATATGAAGCAGGAGTTTTTTGCTTGATGTAGAAATACTATAAGCACAAGCATTTTTGGG # Right flank : CCTCCCGTTTCTTGATTTTCTTTTGTCAACTTGATTTGGGTTTATATCACGTTACTGCCCGTCGTTTGAATGAAAAGAGGGAATAGATTGGATAAAGATATAGTGTCAAATGTAACATTACAAGAAGCAAATATGGAAGATCAGGTTGTACTAAAAATCTTTTCAGCTTTATTTGCATGATCTATCAGAGTATGCTGAAAGTTTAATGCTAGGACAAGACGGAAAGTTCGAAAATGACGTTGTTGAACTTTTTTAATCTCTAGCGGCCATAATGTGTCCTCTAAGCTGTTTTTTTGAAGGGTATAAATACCAGACTTGTTTTTCTTGGCGAAGTTATCACAGGCTAATTTTGAAAGGATTTTATTTTCTCCAATGCCGACTCTGGACCATACGCCTGTTTCTTGTAGGATAGCATGCTGTAATTGTTGGTTATATTGTTTGCTGATCCAAATAGCTTTGTGCTGCCTGTAACATCATGAAGTTGTTCATCGATGCTGTAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTATATCGTACCTATGAGGAATTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 32430-32861 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXJP01000005.1 Longirhabdus pacifica strain SCSIO 06110 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 32430 30 100.0 36 .............................. CTTTCTCGGTACATGATCACATACTGTGACACCTTC 32496 30 100.0 36 .............................. GAACGCATCATCCTGTCACAGGCAAGCGAGTAGCAC 32562 30 100.0 37 .............................. CAATATATAAATCTTCACTAACGATAATAATTTTCAA 32629 30 100.0 38 .............................. TAAAAATATAAAGTAAAAGATGTTGTCATTGCATCATC 32697 30 100.0 36 .............................. CCTACTTTTTTCATCGCTTTTGTGATGCCTCTCCCC 32763 30 96.7 39 ...............C.............. ACATCAAAAGGTATACAGAAACGGTATATAGAAGCAGCA 32832 30 90.0 0 .C......................C.G... | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.1 37 GTTTATATCGTACCTATGAGGAATTGAAAC # Left flank : CTGTCGAAGAGATTGCCATCGAAAAAGGAGTGGGCATATGGGCTCATTTGAATGTTAGAGGTGAAAATTAGTATGAGCAACAAAAATGCATATTGAAGATTTACTTAATTATTTCATCTAGCAAAAAACAAATACAAATAAATATTAATGAAGCACCTTTATTGACATGAATAGACTCGATATTAAAGCTTGATAATAGTATACAAGTTTTATTGACTTGAGCAAATACAACATGAAACAATATGTAGGACATTCGCTGTTATTTTTAATGAAGAAAAGCGGGGCAATGTTTATCGCATTGCATTCCGCTTTTTTGTCGTCGACCTCCAGTAGTGTAAAAATCCCTGGGGACCGACGACAAAATGAAAATGAGAGTAAAAGAGAGGTAGAGTGAGTAAGAAGGAGATGTTGGTTATTTTTATACAAAATGATTTTTTGGGAATATGAAGCAGGAGTTTTTTGCTCAATGTAGAATTACTATAAGCACAGGCGTTTTTGGG # Right flank : CATGATTGATCCCTGTTGTTTAGTGATTGATGGATATATTGTTTCTATCGAATTTTTATCATTTTGACTCACTAACACTAGATAGGAGTCAAGCATTGCCCCGTCGTTTGAATGAAAAGAGGGAATAGATTGGATAAAGATATAGTGTCAAATGTAATATTACAAGAAGCAAATATGGAAGATCAGGTTGTACTAGAAAATCTTTTCCAGCTTTATTTACATGATCTATCGGAGTATGCTGAAAGCTTAATACTAGGTGAAGACGGAAAGTTTAAAAATGACGTTGTTGAACTTTTTTTAACAAGAGAAGATCTAATTTCTCTCAAAATACTTTATAAAAATGAGATGATTGGTTTTATCTTTTTGGTGAAAGGGAAAAACGTGGATTATGCCATCAATGATATGTTTATCTGTAGGCAATTCCGTAATAAAGGCATAGGAAAAATACTAGTGGAAAAGGTGTTTACACAGTATAAGGGTACTTATGTGATAGTGGAATT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //