Array 1 3272581-3270966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012598.1 Salmonella enterica subsp. enterica serovar Newport strain 0211-109 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3272580 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 3272519 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 3272458 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 3272397 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 3272336 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 3272275 28 96.6 32 .....-....................... GGAATAAAAATGAATTTGAGTCAACTCTATAA 3272215 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 3272154 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 3272093 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 3272032 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 3271971 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 3271910 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 3271849 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 3271788 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 3271727 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 3271666 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 3271605 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 3271544 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 3271483 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 3271422 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 3271361 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 3271300 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 3271239 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 3271178 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 3271117 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 3271056 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 3270995 29 100.0 0 ............................. | A [3270968] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3290433-3289248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012598.1 Salmonella enterica subsp. enterica serovar Newport strain 0211-109 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3290432 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 3290371 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 3290310 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 3290249 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 3290188 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 3290127 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 3290066 28 96.6 32 .....-....................... AGATATGAAAAACGTAAAAATTTACACCGCCA 3290006 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 3289945 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 3289884 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 3289823 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 3289762 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 3289701 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 3289640 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 3289579 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 3289518 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 3289457 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 3289396 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 3289335 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3289275 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //