Array 1 227392-229275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCLX010000001.1 Pediococcus acidilactici strain LSF1-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 227392 36 100.0 30 .................................... TGCTTCGGACATTATGATTGACCCATATTA 227458 36 100.0 30 .................................... AATCTTAGTCGATAGGTGAACAATTACCAT 227524 36 100.0 30 .................................... CATTTGAAAGCAAAACGGGTAGCAACGACT 227590 36 100.0 30 .................................... TATGAATTAAAAGATGATGGGCTATATCAT 227656 36 100.0 30 .................................... CAATGTATTACTTCGACGGATTAAGCAACG 227722 36 100.0 30 .................................... TACATCTTTCTACTCATTACCGAAATGACT 227788 36 100.0 30 .................................... AGTTCGTCGTCCAAGTATGTCGATGTGTCA 227854 36 100.0 30 .................................... AAATGAAGGATTGAAACTTTCACTTAATTC 227920 36 100.0 30 .................................... ATGACGCAAATCAAGCAAGGTCAATAGATT 227986 36 100.0 30 .................................... CAAAGGGTTAAGCGATGCTATCGAAATTCA 228052 36 100.0 30 .................................... TGCAAATTCGGCACTAATTCGGTTAACTGC 228118 36 100.0 30 .................................... TTATCAAGACAAATATGGAGCGTCTAACAT 228184 36 100.0 30 .................................... TTCGCGTTGTCATATTCTGCCCAATTTCCG 228250 36 100.0 30 .................................... CGTAGGTCGATTGATAAAGACCCGGAAGTT 228316 36 100.0 30 .................................... CAAATCCTTCCTCAATTGATCCTAGCAGCT 228382 36 100.0 30 .................................... ACAGAACCAATTTCTATTTTTTGTGAGCTC 228448 36 100.0 30 .................................... AAATAGCAGATGTTCTGCGATCAATCTTCG 228514 36 100.0 30 .................................... AAGTCGTGAGCTTGCATCCCATCTTTAACA 228580 36 100.0 30 .................................... TTGAGTTTAACAAAGGCGTAGAAGAATTAA 228646 36 100.0 30 .................................... ATTGCGGTCGGGTTCTTAATTACATCAACT 228712 36 100.0 30 .................................... TCTATTGATACCTTTGAAGAATACTCATAT 228778 36 100.0 30 .................................... AAATTTCGTATTGGGTATAGAATAGTTCCT 228844 36 100.0 30 .................................... CACAAATCACACGCAGTCGTGACTGCGACA 228910 36 100.0 30 .................................... ATTCTTCTTTGAGCCATTTTCTATACCTCC 228976 36 100.0 30 .................................... CAGAAAAACGTTGGTTCACAAATTGATCAA 229042 36 100.0 30 .................................... GGGTGCACACAAAAGTAAAAAAGGGTGCAC 229108 36 100.0 30 .................................... ATATTCTTTTAAACAGTACCAAACATCATC 229174 36 100.0 30 .................................... TCCCTACCTTTCGAATAATTTACATTTGTT 229240 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAGGACTTAGTTATTCAAAAGTATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGGTTGGTGGATGAGCAACGTAACCAAATTCACGATCAGGTCAATCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTCAGTTAGAAAATAACG # Right flank : CTGACTGAAATTAATAAGAGTTAACGTTTTAAGGAAGTTATCAATAGTATTAGAAGTGTACTTTGAAGAATGGAATTTTGATGAAACTACTAGTCATGGAGGATGATAAACTACTAAGGTCCAAATGAATTTATAGGTTTAGCATCATTACTCGAAGACGATGTTTTAGTGGTGGTTGGAAATAAAATCCGGCCGAAACGATCGGGTGGTTTTCAGTTTGTAAAAGTATACCAATATATTGATATAGTAAATGCATAAAGTTAAGAAAGTGATAAAAATTGGGTGATGAAGAATAAAAAAGGTATCGCAATAAGCAAATGACACAATAGTGACACTAATCATTCAGACGATTACAGCTATTGTACAACTCATCACAATGCTTAAAAAATAGGTAAAAGAGGCGATACGCCTTTCTTCTGTTCATCAATTTTAAAATGGAGGCATTAAAATGAAAAACATAGGAAAGCTACAATATTTAACTTTGACTATCAGTATCGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //