Array 1 434682-432784 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIR01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2049 NODE_1_length_497472_cov_1.00451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 434681 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 434620 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 434559 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 434498 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 434436 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 434375 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 434314 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 434253 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 434192 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 434131 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 434070 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 434009 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 433948 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 433887 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 433826 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 433765 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 433704 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 433643 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 433582 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 433521 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 433463 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 433402 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 433341 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 433280 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 433219 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 433158 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 433097 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 433036 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 432935 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 432874 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 432813 29 93.1 0 A...........T................ | A [432786] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 452580-450964 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIR01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2049 NODE_1_length_497472_cov_1.00451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 452579 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 452517 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 452456 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 452395 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 452334 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 452273 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 452212 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 452151 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 452090 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 452029 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 451968 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 451907 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 451846 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 451785 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 451724 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 451663 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 451602 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 451541 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 451479 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 451418 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 451357 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 451296 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 451235 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 451174 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 451113 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 451052 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 450991 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //