Array 1 65179-63519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVPP01000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-356.16 contig_25_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65178 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65117 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65056 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 64995 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 64934 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 64873 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64811 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64750 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64689 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64628 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64567 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64506 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64445 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64323 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64262 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64200 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64097 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64036 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63975 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63914 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63853 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63792 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63731 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63670 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63609 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63548 29 96.6 0 A............................ | A [63521] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1187-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVPP01000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-356.16 contig_25_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1186 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1125 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1064 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1003 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 942 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 881 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 820 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 759 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 698 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 637 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 576 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 515 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 393 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 332 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 271 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 210 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 149 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 88 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : C # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //