Array 1 106418-104740 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXU01000001.1 Salmonella enterica strain BCW_6222 NODE_1_length_269828_cov_4.43761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106417 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 106356 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 106294 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 106233 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 106172 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 106111 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 106050 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 105989 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 105928 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 105867 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 105806 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 105745 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 105684 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 105623 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 105562 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 105501 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 105440 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 105379 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 105318 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 105257 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 105196 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 105135 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 105074 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 105013 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 104952 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 104891 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 104830 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104769 29 93.1 0 A...........T................ | A [104742] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123879-123058 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXU01000001.1 Salmonella enterica strain BCW_6222 NODE_1_length_269828_cov_4.43761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123878 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 123817 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 123756 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 123695 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 123634 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 123573 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 123512 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 123451 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 123390 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 123329 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 123268 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 123207 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 123146 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123085 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //