Array 1 49674-47457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWKA010000005.1 Bifidobacterium longum subsp. longum isolate LH_206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 49673 36 100.0 28 .................................... ACAGCGGCGATATTGCGTTGAATCAGGT 49609 36 100.0 29 .................................... TGTTGTTTCGTCGATGGCGCGGTCGGTGA 49544 36 100.0 28 .................................... CATTCGGAGGAGGTGTCTGTCTGATAAA 49480 36 100.0 28 .................................... ATCCGGAACGGTTCGCCGACGCCGGCCG 49416 36 100.0 28 .................................... GGAGAACAATGATGAACGAGAACGACAA 49352 36 100.0 28 .................................... GCCTTCTCTCGCTTGTGCGGCCAGAAGC 49288 36 100.0 28 .................................... TCTACCGACGTGATGGGCAACTACACGA 49224 36 100.0 28 .................................... GCACTCAGAATTACCACACATCCGATGG 49160 36 100.0 29 .................................... TGCTTACCGCGCCCTTAATACCGTTCCAT 49095 36 100.0 28 .................................... GTATGATTCCTTTGGGTGGGCGTGGATG 49031 36 100.0 28 .................................... ACGACGCAAGTGTGGTGTTGCCCGACAC 48967 36 100.0 28 .................................... GTTCAATCGGCCTTGATAACCCGCCTGA 48903 36 100.0 28 .................................... TGATGTCTCCTGTTGTGATTCGGTTTAT 48839 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 48775 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 48711 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 48647 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 48583 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 48519 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 48455 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 48391 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 48327 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 48263 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 48199 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 48135 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 48071 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 48007 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 47942 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 47877 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 47813 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 47748 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 47684 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 47620 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 47556 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 47492 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAGTAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 130940-131284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWKA010000039.1 Bifidobacterium longum subsp. longum isolate LH_206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 130940 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 131006 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [131012] 131090 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 131150 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [131198] 131198 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 131255 27 81.5 0 C.............C....T.....CG | G,CC [131271,131276] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //