Array 1 5775-4052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJA01000168.1 Streptomyces kebangsaanensis strain SUK12 scaffold_168_114990nt, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5774 36 94.4 37 .........T.....A.................... ATCGTCGCCCGTAAGCGCGCCGAGACCCTCACCGGCA 5701 36 80.6 38 .......T.T...T......AG......G......T TTCTTCGGGTCACGACTGTCGGTCGAGCGCTGTACCTA 5627 36 77.8 36 ....A.C.......TA.A...G...G.......C.. ACCGTGATCCCGTCGCCGCCGGGGTTGGGCTCGTAC 5555 36 100.0 37 .................................... GGGTTGTGCAGGGCGTATCGTCAACCGCAGGGATAGG 5482 36 86.1 35 ...............C....A.G.....G......T GGCAGGTTGTAGGCCGTACCCTGCCCGCTGACTGG 5411 35 88.9 40 .............-T.A..T................ GAACAGTGGCGAGATAACTTCTGCGGCATGATCATCGACC 5336 36 97.2 38 ...........T........................ AAGATGATCGGCAAGGGCGGCGACTCTGCCCGCGACGC 5262 36 100.0 36 .................................... AAGATGATCTCCGGGTTCACCGGTACCGGCACCGGC 5190 36 97.2 36 .....................T.............. TCCACGCCGGGCACGCCCACGGTGGGCAGGCCTGCC 5118 36 94.4 37 ............G...A................... GCCCAGTTGTACCGCGACGGGGCCAGCATCCGCGCCC 5045 36 100.0 37 .................................... GATGAGGTCGGAGTCGAGACCGATCTGCCGTGTCAGC 4972 36 97.2 39 ..........T......................... ACCCTCACCGGCAGTGACGAGCTGTCCCGCGTCCTGAAG 4897 35 75.0 38 ....AA...T....-......G....C.GC.A.... GGCTTGATGCTCAATCGGTGGTTACCCACCGGGAGTAG 4824 36 69.4 37 ..........AG...AAAA..T.T.C.....A..G. CGTTACACGTTTCTGTTGGTGGAGTACGCCGACAAGT 4751 36 86.1 37 ....A...T.T...T...........A......... CACTCCAGTCCCTGAGTGGAGATGACGATCGGGATCG 4678 35 91.7 37 ...........-.G.............A........ CAAGTGGACGGCTACCTGTTCGGCGCCCTGGTCCACG 4606 36 83.3 39 .........T....T.A...AG....A......... GTCGAGAACTTGGCTTGGGAGTTCGGGGATGACAGCGAC 4531 36 91.7 40 ....A.....T.......................G. CCGGTGGAGTTCGTGCTGCAGCGCGCGTACGAGATGGGCC 4455 36 88.9 38 ............A..A...G.....G.......... TACAAGACCGCGCCGGGCACGTACGGCGGTGACGCGGG 4381 34 80.6 41 ...T...GA..G......-......G...-...... AAGTGGATGGGCGGCGGTATTGCTACCTACCATCCTGTTGG 4306 36 91.7 36 .......T..T...T..................... ACCGGCTTCCCGGTCGTGGCGAACTGGAACCTCGAC 4234 36 97.2 38 ...............A.................... AGCGTCCGCTCGTACAGGACCTCGTCCGTCCCTCAGGC 4160 36 94.4 37 .........T........A................. GTCGCGACGATGTCACCCCAGCCGGACCGGCGGGGCC 4087 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== ========================================= ================== 24 36 90.0 38 TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CCGCTCGAGGCCGGCATCACCCGTGTCGCCCCGAACAAGCCCGAGGACCTGGCCAAGGGCAAGGTCACCGAGATGGGCAACAAGCACTACGTGCCCTACGGGCTATACCGCGGCCACGGCTTCTACTCCGGAGCCCTCGGTGCCAAGGCCGGAGTGACCCCGGAAGACCTCGCCGCCTACTGGCAGGCCCTGACGATGATGTTCGACCACGACCGGGCATCCTCCCGCGGCGAAATGGCCATCCGCGGTCTGTACGTCTTCTCCCACGACGACGCGTACGGACGAGCCCCCGCCCACAAGCTCTTCGACCTGATCCGCATCAAGCCGCTCGGCCACAGCGAGGCACGCTCCTGGGACGACTACGCCGACCGGATCACCATCGACGAAGACAACGCGCCCGCTGGCGTGTCCCTGACCCGGCTCATCGACTGAACTCTCCAGCCGTGGGGGCCAAGGATCGCAACGATCTTGAAATCAATGCCATCCACCAGCTCCAGGCA # Right flank : TCGGCGATGTAGTCCTCCAAGTGCGCTGACACTGGGCCCGTAGCGCACCATCAGTCCCTGGCAGCGTGCGCAGTAGCCGACCTGGTTCGGGGTGAAGTGAAGGATGAGCGCGGCCGTGGCCCGGTCCGTGGTGGGGCCGATGCGTGCTGGCCGCTCACCCATGTATCCGAATGTACGTCCGGCGTCCGCTCCTGGCGGGGTCAGGGGACGTTGTCGCTGTCGGCTGGCGTGGCGGAGGGGTTGATCTGCGGGACCAGCCCGTACAGGACGCTCGGGCGGGTCCCTCGCGCACCAAAGCCCTTTTCAGTCACTCCACTATCTGATCTACTCCGCGAGGGTGTTGCGAATGCCTGGTTGTAGGCGGTTCGCGGATTTGCGTGACCGCTCGCCTTGGGCCGATCCGAAAGGGGCATGGGCATGGCGGAGGGGGTGGTGCACATCGCCTTCAAGGGCGACGTGGTCGCCATGTGTGACGCGCCGATCGACCGTTCAGCGCCGCG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.40,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [27-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12053-12745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJA01000168.1 Streptomyces kebangsaanensis strain SUK12 scaffold_168_114990nt, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12053 36 81.1 35 GC..T.....T..G..-.T.................. GTCACCCCTGACGGCCTGGAGGAGGCGCTCGGGGA 12124 37 97.3 36 ......................G.............. TCCGCCGCCATCAACTGGGCGTGCGTGTGCTCGCCC 12197 37 97.3 35 .......................T............. ACGCTGCTGCTCAACGTCGGAGACTCCGCGCTCAA 12269 37 94.6 38 ...........T........G................ ACCAGCTGCGGCTGCGCGTACACGAGCGCACCCTCGAG 12344 36 94.6 37 .........A....-...................... GGTGCCTGCCGAGAAGCCCCGGCAGGTGGTCACCGCG 12417 37 91.9 35 ........T..............T.....G....... TCCACCAGGTCGGCCTTGGCCTCCGGCGGCAGGTA 12489 37 100.0 35 ..................................... CACGGCCCCTTGATCTGGAGATTCTTGAAGCTGGA 12561 37 97.3 37 .....................A............... AGCACATGCATGTAGCGCGACATGGCGCCGAGCCGGG 12635 37 97.3 37 ......................G.............. AATGACCGGCCGATGGACTGGAAGGTGCCGATCGGTA 12709 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 95.1 36 CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CGCCTCCAGGCAGGACAACACTCCAAGGACCCCAACGGAGCCACCGGAGAAGTCATCGAAGCGCTGCGAGCAAAGCTGCACTACCCGGAGGTCGCGCACAGAATGCGAATCATCGACAACGAACACTCCGTGGCCGTGGTCGTCATCCGCCCCCAGCTCGAAGAAGAAACCCGACAGGCCGCCCAGAAGGCAGTCGACCAGCTCCGTCGCGGCCTGCCAACGCCAACGACCTACCGCACCCTGCAGGAGCACATGGCATCCATCCCCGAGCGGGAACTGGAACTGGCGATCAACGCGGGTCACGCCATCGAAGTCGCCGGTGACCTGCACCAGTGGGTCGGCCCCTACCACCCCCAACGAGGCATCGAACCCCCTGCATGACCATTCAGACCACCGAGCAACGCCTCACCAGTACGCTGACGGAACTGGACCAGCCTGCTGCCGAAGTGTGGTGATCAGCTTGCAGTGAAAATTCGAGTGTTTGGAAAACCGGACCCGTC # Right flank : CATGGCCTGCGCTCTCCCGTGACGGGACGCCCGGCGTCGTCGCCGGGCACGCTGGGCACACACGTGTTCTACGCCACGGTCTCGCCTTGAGCCGTCCAGGTCCGCAGCATGCGCTTCCGGCCGCCAGTCTCCTCAATGAGCCGCACCACGACGTTCGGGTCCTTACTGAGAGGCCGACCCACTCCGTGTAGCGGTCGCGGGCGGTCGAGGGCAGCGCCCACTCGCCTTCCACGGCGGGCCCGTCGGCCTCGAACTGAAGCCGAACAAGGTACATGGTCTCCATGCGGCGTTCCTCCGGCTTCAGTGTCGGCCCCGGCTCCCGGCGAGGACGGCCGACAGCACCGCGTCGGTGCCGAAGCGCGACGGGCAGGGTCCGCGGCGGTTTCGATACAGCGGGCCTCGTTGTCGTAGTGGTCGAAGGTCGCTACGACCTGGTCGTCGCACAGGCGGGTACCAAGCTGGTAGGTGAGGGCCGGCCGTGGCTGACCGTGGTGGTCTTG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : CTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 14794-15297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJA01000168.1 Streptomyces kebangsaanensis strain SUK12 scaffold_168_114990nt, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================= ================== 14794 37 91.9 35 ..........C..C.G..................... TGGAAGGTCGTCCATGAGGAGGACGGGCAGGTCTG 14866 37 91.9 36 ...............T...A..G.............. GCCGAAGCGGTGTGCGCTCAGGTCGAATTCTGGGGC 14939 37 91.9 38 ...................AT.G.............. GGCCCGCTCGCGCAGATCATCGGCGCTGGACTCGTCGG 15014 37 100.0 36 ..................................... CTTAGACGCGAGGGATCCGTCATGATCGCCCGAACC 15087 37 86.5 65 A.........C...T.......G.T............ ATGCGGTACGACAACCTCGGCGACGCCTGCCACCTTGTGATAGGGCACGAGTAGGTCACTCTGAC 15189 37 91.9 35 ..........C...T.....................T CTTGTTTTGAGGCGCCCGACGTCCTTCTTGACCTG 15261 37 83.8 0 ....G.....C....................GT.CG. | ========== ====== ====== ====== ===================================== ================================================================= ================== 7 37 91.1 41 CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CGTGCATCACCGTCGGCTGCCCCTCGATCTCGTGGTTCACGTGGCCACCTCCCACCCCCCACGCTATCGAACAGGAAATCGAACACGCGAGTGCAGCGACACCGCGCGGCGAGCCTAGAATCATAAATATGTTCGACGATCTGCCGTCTGACCTGGAAGGACTGCGCACCCTGCAGGTCTGGCATGAGAGGCGGCTGCGCCGCATCGACCGCAAGATCACTCAGCTGGCGCAGCGGCAGGCAAAGCGTCAGGCATCCGCCCGGCGCCTACGCGACCGCCACCACCACTCGTACCAGAACCGCGCACCGATCTACGTTGAGGCCTCCACGGCCCGGCTGCACTTGGATGTCACGGTCTGGCACTCGAACGCTCCCAGGAGCCCCTGCCTCTACGGAACGCTCATAACTACGGATTAGGCAAGCGGCATCGCCCGATCGGCCGTCACTCGCTGCTCGCCCACACGGCAGCGAGCGGTACGCTGTTTCCACTACTCAAGCAGC # Right flank : CCCACCGGTCGATGCCGCTGCCGACCGCGGCCGGGGCCTGCCAGGCCCGCTCGGTCACCAGGTTGTCGATCACCGCGGCGAACGTGATCGGATTACGTCCACCGGTGCGCTGCGACGGCCTCACGCGCCGGGTAGCGGCACCGCCTCCTGTCGCGTCGGCCGGCCGGATCTTCGCTGCAGCCCGAGCGACCTGCAGCGCTACTCAGGCCAGGTCCTCGCTCATGCGTACTCCTCCCAGGGACGGTCGATCACCACGCACGCTGCCAGGGCCTGACCGTGCGCTACGGGCCCAATGCCCAGGTCACATTTGTCGCTACTGTCAGGCGATCGAGCGCCAGAGCCGCTAGCCTGTCCCCAGCAGCCCGGACAGGGCCCGCGTAGACGGCCAGAGGCCCTATCCCCGAGCGGGGTAGGGCTTCTTTGCGTCGCAAGGGGTCTGCGCTGGAGGCGCTTTCGCCCCCGGCACTGAGCTGCAGGCCCGCCCGGCTGGGGCCGGGACA # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:-0.42, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGTCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.30,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //