Array 1 2663176-2662169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006692.1 Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2663175 29 100.0 32 ............................. GCTCTGCGCTCTTTTCTGGCTCTTTGTTGCCA 2663114 29 100.0 33 ............................. GGTTACAAAATTGACCACGATCTGGAGTTCAAC 2663052 29 100.0 33 ............................. AATATTTTTATATGAAACAGCCTGTAGCTCAGG 2662990 29 100.0 32 ............................. CGCAAAACAGATTGCGGAAAAATTGTGCGATG 2662929 29 100.0 32 ............................. AAATTGTTGATATGTTCGCACCTGAATCTATC 2662868 29 100.0 32 ............................. ACGTACAACTAGGAGCGCAGGTAACTCCTGGG 2662807 29 100.0 32 ............................. TCTTGCCATCGCCGGCAAACCCCATAATCCCC 2662746 29 100.0 32 ............................. CGAAGAGGGCGGATTCAGCTAAAAATGCAGGG 2662685 29 100.0 32 ............................. TCTTTCTTCCGGACGGGTATACGCGAACTCCA 2662624 29 100.0 32 ............................. TCACAGCCTTTTGAAGGAAGATATTTAAAAGA 2662563 29 100.0 32 ............................. TTACTTTGCGAATTTACCATCACACAACCGGA 2662502 29 100.0 32 ............................. CCCTTCGTGTCAGCAAATCAGCCGGGTGTGGC 2662441 29 100.0 32 ............................. TCCACAGGCGCGGTGCTACCGCCCATCAGTAC 2662380 29 96.6 32 .............C............... CTGGATATCCAGAATCAAAACTGCTGAACGCT 2662319 29 96.6 32 .............C............... ACCTACAGCCACTATCTAACGAAGAGCGTGAG 2662258 29 93.1 32 .............C.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 2662197 29 75.9 0 .............C.......C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2680055-2679171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006692.1 Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2680054 29 100.0 32 ............................. CGCATCTAAAAAATGCGCGGTATTTACCTCTT 2679993 29 96.6 32 ............................A TTAATATAATCAGCAATCTGTGATTTATTTGC 2679932 29 100.0 32 ............................. ATTAATAATAGCGCCGCTTCCTTCTCCTCCAG 2679871 29 100.0 32 ............................. ATGATGAGGCGGCGCAGGGTTGGTCAACGCTG 2679810 29 100.0 33 ............................. GCTGATGGCACTGACCTACAGCCACTATCTAAC 2679748 29 100.0 32 ............................. CCTCAGCCGTCAAAACTGGAACAAATCATCGC 2679687 29 100.0 32 ............................. AGTCTTCAGTAATTCCCAGAGAGGAGTTATTG 2679626 29 100.0 32 ............................. CGAATTAACTGTATCAGGATTTAATAAACTTA 2679565 29 100.0 32 ............................. GGAGAAGGCCCGGGTGCAGTTGACGTGTGGAT 2679504 29 100.0 32 ............................. TCGGTATTGGCAGCTTCCCAATTCCTGCGCGA 2679443 29 100.0 32 ............................. GCGTGTGGTTAATTGAGTAGTACCATTTTTAA 2679382 29 100.0 32 ............................. TAATCGCTTCCAGCAACTCACCCGCCTGCCAG 2679321 29 100.0 32 ............................. CAAGCCCCTGAGTATTACGTCAGATCAGAACT 2679260 29 100.0 32 ............................. AGTGTCATCGAGAGAGCAAAAACTAGACAGGC 2679199 29 93.1 0 ....................A.....T.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGGCATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGCTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGGACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAATAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //