Array 1 1112-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQW01000020.1 Enterococcus faecalis strain R5E NODE_20_length_48489_cov_42.330135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1111 37 97.3 29 ....................................G AACAACGTGGATTCAAACATGTTGGGACA 1045 37 97.3 29 ....................................G GTTTATATTTGTGTAAAGCGAAATATCCT 979 37 100.0 29 ..................................... GTTAATGAAATGGGTTGACAGTGATACTA 913 37 100.0 29 ..................................... AATTTTAAAATACGGCAGACCGATAACGA 847 37 97.3 29 ....................................G CGTACAGCCATTCGTCTGGCATCTTCAAT 781 37 100.0 29 ..................................... AGCACAAAAGGCTGAAGAACAAAAACAAC 715 37 97.3 29 ....................................C AAATATTATTGGGAATGCGCTGACTTCTT 649 37 100.0 29 ..................................... ATGTAAGTCCACCAAACACTTTGTTATAT 583 37 100.0 29 ..................................... GGCGAATAGAAATTCAATCCCACTGTTAT 517 37 97.3 29 ....................................T CATGTCAAAGGGCGTTCTCGACCAGCAGA 451 37 97.3 29 ....................................T TTTATTACGGCAGGATACACAGAATCAAA 385 37 97.3 29 ....................................G ATGAACCGCAAATAAAAAATACAAGAAGC 319 37 100.0 29 ..................................... AATTATTGAACGCTTTTTACAAGACTATG 253 37 97.3 29 ....................................G CATCACGTTCTGCTTCAACATCGAGCATC 187 37 91.9 0 .........................A..G.......T | ========== ====== ====== ====== ===================================== ============================= ================== 15 37 98.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : ACATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAAGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTTGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGA # Right flank : TTGATAGGTGCGCCAAAAATCTTTTTGGAATGGCAACACTTTTTTTGACAAAAATTATAAGGTGTTGTGAATGCTGCGGTGTTATGGCTCCGATTGCCCTTGACAATGAGCATCCTCGGATCTGATTTTCTCCGGCAGAAGCACAATCATT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4284-5112 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQW01000018.1 Enterococcus faecalis strain R5E NODE_18_length_51421_cov_44.289839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 4284 37 97.3 29 ....................................A AGTGGAGCGTTGTTTGTTCATTACTATAA 4350 37 100.0 29 ..................................... TACGAAAAATACTGGAGCTCCCTCGTCCA 4416 37 100.0 29 ..................................... ACTCCACGTGCTTCCATTTCAAAAGTTAG 4482 37 97.3 29 ....................................A TTTTCATAGTGACCATTTGCAATATCTAC 4548 37 97.3 29 ....................................C TAGAATTTAGTTAAAACAAACAAATTGAA 4614 37 100.0 29 ..................................... GGTGCACCCGAATGCCACACTTTCTTTTA 4680 37 97.3 29 ....................................G TTAGCTGGGCGGTTCAATGTGGTCATCTA 4746 37 97.3 29 ....................................A CGTTTGATTGCAGACATTTGTAAACGATA 4812 37 100.0 29 ..................................... TGCGATAATGTTTTTCAATGTTTTTGTCA 4878 37 100.0 29 ..................................... GCCTGCATTAAGAAATAGCTTGATTGTTC 4944 37 97.3 29 ....................................G AATAAGTATCCAGTAGTTATGAAGGCTCT 5010 37 100.0 29 ..................................... GCTAAAGGAATTGATGATTGATATTGTGT 5076 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 13 37 98.5 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GTAACGATGGGGAAAGTAAACGCTGTATTAAATTCAGGAGAAGAACTATACGATGTTTCAGAGGATAGACGTTTTGCTGTGTTAGACATGGGGTTAGAAGATTTAATGAAAATAGAAGAAGTTTGTAAGGAATATAAAAAACCAATACCAACAGAATTTAAATTAATCTATAACGTTGAAACAACAAGCTTTAATACAAAGTATAAATATGACCTTCAATATTCCAATAACGATGCTTTAACTGATTATGATCTCTTTATGTCGTGGTATGAAGAAGTTAAGAAAGAGGTAGAAAATCCACCATTGTAATTTGGATTTTAATAAATTTTCATTTTTTCTATTTATTCGAACAAAAAAATGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAAGGAATCAATACATTTTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTACTTTGAAGTAGTAACGAGTGCCTTTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5158-5524 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQW01000047.1 Enterococcus faecalis strain R5E NODE_47_length_7340_cov_47.323167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 5158 37 100.0 29 ..................................... TTAAAGTCTGTGAAAAGACCAGCGACTTG 5224 37 97.3 29 ....................................G AGTATATAAATAGAAAGGAAGAAACTCAT 5290 37 97.3 29 ....................................A TGTCTTTCTCATTTTGAATTGAACGGTGA 5356 37 100.0 29 ..................................... AATGCCTCGATCGTACTTCCTTTTTGAAT 5422 37 100.0 29 ..................................... AATGCCTCGATCGTACTTCCTTTTTGAAT 5488 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAATGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATAGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGAGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGAAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GTATACAGTTTAAAATTACTAGCAATTGGATAGGCTACAATTAACTAGACAGAAAAATTAAGGTGTGTAGACTAGAAGAAAACATACCAGGAGGAATTTTTATGTCTAAGAGAACACGAAGAACTTTTTCACAAGAATTCAAGCAACAAATCGTCAATCTTTACTTAGCTGGAAAGCCACGTGTAGAAATCATTCGAGAATATGAACTAACGGCTTCAGCATTTGACAAATGGGTAAAGCAATCTAAAACGAGTGGTTCATTCAAAGAAAAAGATAATCTTACGCCTGAACAAAAAGAATTGTTAGAACTACGTAAAAGAAACCAGCAATTAGAAATGGAAAATGATATTTTAAAGCAAGCAGCGCTGATATTCGGACGAAGAGACAAGTAATCGATGCGAATAAGCATCTTTACCCTATATCAGCGATGTGCAGAATATTAGGTCTATCACGTCAGTCCTATTATTATCAATCAAAACCAAAGAAAGACGAATCAGAAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 7170-6936 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQW01000047.1 Enterococcus faecalis strain R5E NODE_47_length_7340_cov_47.323167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 7169 35 81.1 29 ......CG.AA.--......................C CCTTTATCCAACAAACCACCGTCGACCGT A [7168] 7104 37 97.3 29 .........................A........... TCACAGATGTAGCCCCTCTACCAGATATT 7038 37 100.0 29 ..................................... TAGCGTCGGTACCTACTACCATTCTATAG 6972 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 94.6 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : ATGATTGTGCTTCTGCCGGAGAAAATCAGATCCGAGGATGCTCATTGTCAAGGGCAATCGGAGCCATAACACCGCAGCATTCACAACACCTTATAATTTTTGTCAAAAAAAGTGTTGCCATTCCACAATCACATTTATACATATTAACGATATTTTTACATCAATCATAT # Right flank : ACTCACCGCCTTATCAACGATGGAATGGCAACAGTTTTTTTGACAAATTTTATAAGGTGCAGAACTTCTTTCCGTATGCTATTCCGATTGTCCTTGACAATGAGCCTCCTCGGATGTGACGATCTTCGGCAGGAGCTAACAGTTAAAGTTAGACTGCCTCTCTAGCGTTAGCACATCCGAGCTCATTATCAAGGATTCGCTGCGCCAATCTCTGGTTACGGTAACCAACCGGTGTCTCGTAGCCAAGTGTACCGTGCAACCGAAGGTGGTTCCACCAATTGACATAGTCAAATAACTCCAAATCCAATTGTTGTAAGGTTTCAAATGTGTATTGATAGACAAATTCTACTTTCAACGACTTATAAGTTGATTCAGCTACGGCATTATCAAAAGGACAGCCTTTATGACTCAATGATCGATTGATGTCAAAAGTTGTTAATAATTCATCAATAGCTTGGTTATCAAACTCTTTTCCACGATCAGTATGAAAAATCTCAACC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //