Array 1 22758-24251 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVS01000038.1 Corynebacterium sp. LK11 contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22758 29 100.0 32 ............................. CAACCCGCAGCACCACATGACGCTCAAGATCC 22819 29 100.0 32 ............................. CAGACCTAGCGGCCTGCGCACGGCTCGCAGCG 22880 29 96.6 32 ............................G CGTCTCCGCAATCCGTAGCTCATCAGGCTCCA 22941 29 100.0 32 ............................. AAGGTCGGTGTCGGTAGTACTGGCTCCGAAGA 23002 29 96.6 32 ............................G ATTCGACAAATCAACCACCGGGGCAGGAACCA 23063 29 96.6 32 ............................G CGCTGTGCCTGCCCTCCCAGCCAACCGCGCGG 23124 29 100.0 32 ............................. GACGAACAGCCAGAGAACATGCGTCTCATGCT 23185 29 96.6 32 ............................G GGGCCGAGGCCACGTCCGATTTTGGAGACTGT 23246 29 96.6 32 ............................G AACTGGGCGCAGGCTGCCTGGGACTGGATTGT 23307 29 96.6 32 ............................T TCGACGGAGTGCCGTCCACCTCGTAGACGATT 23368 29 96.6 33 ............................G GCACTGAACGGCGCACAGTTGGAGGGCGAGGGG 23430 29 100.0 32 ............................. AAATACAAGGTCTTGAAGCCGGTTGCCCCTTT 23491 29 100.0 32 ............................. AACGTCCTACGTTAATAGCCTAAAGGTGCAGC 23552 29 96.6 32 ............................G TTGAACGCCGCAGCACCGTGCTTGAGAATGCC 23613 29 96.6 32 ............................T ACGGCTGCAGCCCGGAAACCAGGCGCGTCGGC 23674 29 96.6 32 ............................A ACTCCTGGTTCGTGGCTGATTACAGCCAAGTG 23735 29 100.0 32 ............................. TCCATCTGCAGCTCCGGGTGATGGCGGAACCC 23796 29 100.0 32 ............................. GCTGCTGTGAGCGCTGCGAGGAGCAGGTACAC 23857 29 100.0 32 ............................. CTGTTCAGGCTCAAACCAACCGTTACAATCCA 23918 29 96.6 32 ............................T CAGATTCTGCTCCGCAGCCTTCACCGCAGCAG 23979 29 96.6 32 ............................A GAACTCCGCACAGAGTTCGACGCCGAACGAGG 24040 29 96.6 32 ............................G CGCGGCAACGCTCGCCCCGGCTCAAAGCGTTA 24101 29 96.6 32 ............................G TAGACCTGCTTACTGCACAGCGGGAGACGTTT 24162 29 100.0 32 ............................. GCAGCACCCGGTACGGAGACGCTACACCAGCT 24223 29 82.8 0 ................T....TA....AA | ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.4 32 GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : GAAAACGAGGAATTCGGCGAAGTTATCGAATTGTGGGATTACAGCCGCGGCACGATTAAAGGTGGTACAAACTACTCCTCCGGAGAACCGCCATGGTGACACTAGTTTTGACGAGCTGCCCTGCCGGGTTGCGGGGACATCTGACTCGGTGGCTCGAAGAAATTGCCCCAGGTGTATTCGTTGGGAAAGTTAACTCTCGTCTCCGTGACATCTTGTGGGGACTCGTCATCGAAATGGTCGGCAGCGGTCGTGCCATTATGGTTTATCCGGATCGGAATGCCGAACAAGGGTATGCCTACAAGGTGCATCGCCACGATTGGGAGGTCGTTGATGTTGAGGGGCTATCCCTGATCCGGCGTCCGTTCAAAAACAGGACTAAAGGTGATATCGGATTACAACCGGGGTGGTCAAATCCAGCCAAGCGGCGTCGCGCCCGACGTGCTCGTCGAGCTAAGTGATATAAAATTTTTCACTGGGAACCGAACTCTGCTGGTTAATAA # Right flank : AGTTTGATTATGAGGGGATATTATCCCGATAGAAACACTCAGGAGGGTACACGCATGACAAGGTATTGGGATCACAGCGGCAGTATCTACAAAGATGACGGTCAGGAAGACTGGTGCGTTTACAATCCGTCTTTGCGTGATTGGGAGCGCACCCCGCGCGCTAAGGAAGCCTACGACCAGGCAGGACAAGACTCGTTCGACCCCATCACCGAGCAGCAAGCACTCGCTGAGATCGCAGAGCAGCAGGAACAGCATGACGAAAGGGCGAAGAACAAAATCAAGGAACTGCGCGCAAGAATGAAAGCTGTCGGCGCGCAGGCAAGGCAGGCTGACGAACAGCCGTATCCAACTTTTTCTCAGCAGTCCGCCGCATACCGTGAGGGCGCGCAGGCCTACAACGAAGGCAAATCTTGGCGCGATAACCCGCATGCCCCCGAGTCAGGTCTAGCCGCCCCGTGGCGCATGGGTTTCAATACCCGCAAGCAGCAGGTAGCGGAGAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52647-50972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOVS01000031.1 Corynebacterium sp. LK11 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52646 29 100.0 32 ............................. ATCGCCCGGCCCAAACCCGTCAACCTGAACAC 52585 29 100.0 32 ............................. CAGCAGGCGGACGCGGCCAAGCAATATCCGCC 52524 29 100.0 31 ............................. ATGCTTTCCACCGCTATCCAGTGGTGGGTGA 52464 29 100.0 32 ............................. GAGATGAACGCCTACCTGGACTACAACCCAGA 52403 29 100.0 32 ............................. CAGGTGATTGTCCGGAACCCTGCGGCAGGTGT 52342 29 100.0 32 ............................. TCAGGTGATGTACCTGGAGGTAACGCGCGCCG 52281 29 100.0 32 ............................. TGTTCGAATTCGTACTTTTCGGTTGTGATTGT 52220 29 100.0 32 ............................. TATAGCACTCACGGTGAAACAGGTCGCCGAGC 52159 29 100.0 32 ............................. ATCACCAGCGCCATGAAGATAATCGTGCCGAA 52098 29 100.0 32 ............................. ACCTGTAGGGACATGCCCGGCCCTGGGGCGCG 52037 29 100.0 32 ............................. GTCAAAGGGCCACGCACCCGCAAGAACTGTTT 51976 29 100.0 32 ............................. AAACTATGCAGTTGCGTGCGCAGATTAAGGCA 51915 29 100.0 32 ............................. CGCATCGCCGCCGGTCGGCCCAGCTCGTCAAG 51854 29 100.0 32 ............................. GTCGGTCCAGCTAGTACCCGCCCAAACATGTA 51793 29 100.0 32 ............................. GGTGGTGTACGGGTAGTAGTCCCCATCATTGA 51732 29 100.0 32 ............................. CACACAACTACTAGCCCAAGTAGACAACAAAA 51671 29 100.0 32 ............................. CAGCACCCCGTGTTCACACGAACCCGCATCGC 51610 29 100.0 32 ............................. AGAATGAAATCACCACGCTTAGCCTCAAACTT 51549 29 100.0 32 ............................. CTCAGTCAGGAAGACCTCGCAATGCCAAGCGC 51488 29 100.0 32 ............................. ATTGTCATGGGTGTGATTCAGTCCGCGATGGA 51427 29 100.0 32 ............................. TTGACCGACCGGGCTGTGTCGGCTGCTGACCG 51366 29 100.0 32 ............................. ATTCACCCGCACCACATTCGGAGTCGGCCCCG 51305 29 96.6 32 ............................T GAGAGCGAACTAGAAGCAACTCATGATGAGGA 51244 29 100.0 32 ............................. ACTTCTTCCTCGGCGACCGTGTAGGCGGGGAA 51183 29 96.6 32 ............C................ CATGAGATGGTCTGCCACATGAGATACTTCCT 51122 29 96.6 32 ............C................ ATTGAGCAGTTGGGCGCAGGTGCGTCGATTCG 51061 29 93.1 32 ............C.....C.......... TGGCAAGCCTTCCTCCGCGACCACGAGCAGGA 51000 29 86.2 0 ...........GC...........G...T | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 CTCTTCTCCGCATACGCGGAGGTATTTCC # Left flank : TTCATCGAAGGGGCATGTTGAAAGAGATGATTGGAGTATTAATGGAGATTCTCGAACCGTATCTGCCAGAAAGAGACGATGACCGGTTGATTGCGGGACGGGGCGACGAAGTGGCTGGGCATACACAGTATGGAAATCGACCCCAGTAACAGTAGGTGCGTCCCTTATGTTTTTGGTACTTACTGCATCTAATTTGCCGGAACATCTCCGAGGGTATCTAACTCGTTTCTTAGTTGAAGTTGATACTGGAGTTTTTGTCGGTAACGTGTCGAGACGCGTTCGTGATAATCTATGGGGCCGGTGTAGCCGAGCTATAGGGGAGGGACGTCTAACGATGATTAATAATGATCCCACCCGAGAGCAGGGGTTCGCCGTAAATACGATGGGGAGTAATCGCCGAGTGATTCAGGACTTCGATGGTCTGTTGCTGCCTGTGACCTTATCTGCCGAAACTCGCGGACTTGAAGAAACTTCTTCGTAAAAACCGCAGGTCGGGAACT # Right flank : CAGGTACCAAGCGTCAAGCTCGCCACCTACCTTGTGGCCCCAGCCTCAACCCCCTACCGCTTCCGCAGCACCAGCACCAGGTTCGACACCGCGAACTCGCGCAGCCCTGGCACGTGCACCATCCACCAGGCCCACCACGGGTGGTAGCGCGGGAAAGCGGCTAGCAGTTCACAGTCGCCAGCCTCCGCCGCAGCGCGCGCCCACTTCAAACCTTCACCGCAACCGACCTTGAACAGGGACTCGCCAAAGTAGTTCTTCGGCCGCTTGCCATGCTTCTTCTCATACATGCGCCGCGCGCGGTCGCCACCCAGGTAGTGCGTCATCCCCATCTCGTGGCCGCCGAACGGGCCGTACCAAATGGTGTAGGAGTAGACGACCAACCCACCCGGCTTGGTCACGCGCAGCATTTCCTCACCCATCGTCCATGGATCGGGCACGTGCTCGGCAACGTTCGATGAGTATGTCAGGTCAAAAGCATCATCGCGAAACGGCAGTTCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCATACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //