Array 1 28376-29137 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZN01000024.1 Streptococcus halichoeri strain S171 NODE_24_length_31804_cov_69.309752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28376 36 100.0 30 .................................... CTAATTTTATTGGCTTTGTAGGATACTTAG 28442 36 100.0 30 .................................... AACAGCGTAAGAAGCCCAATCTCGGCTTTG 28508 36 100.0 30 .................................... GTAAGCTTTAAGGTCGCGTCCAGAACCATC 28574 36 100.0 30 .................................... CGATAATTTCGTTATCAGCATTCATCCAAT 28640 36 100.0 30 .................................... TCTAGAAGAGGCTTTGCAACGCAAAGCTGT 28706 36 100.0 30 .................................... CAGTTTATTTAGTGATCTGATGCAATCAAC 28772 36 100.0 30 .................................... CCGCCGATTAGTTAAAGATTTGTCTAAAGT 28838 36 100.0 30 .................................... ATGGGATTTAGTCAAACAAAAAACGAGTTG 28904 36 97.2 30 ...............A.................... ATGCATTTCTTGGAGGAAGGGAGCTAAGGA 28970 36 100.0 30 .................................... TTACAGACGATTGGGAATTTAAGGTTTTTA 29036 36 100.0 30 .................................... CTTGCCCTGCTTTATCGTCAAAAATTGGTT 29102 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATAACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTGTTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTCCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAATACTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CGAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAGAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTTTACAGAGAGGGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCCAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGTTAGTTCGAATCCGGTTGACGAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 9714-10277 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZN01000044.1 Streptococcus halichoeri strain S171 NODE_44_length_10462_cov_62.687567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9714 36 100.0 30 .................................... TCGTGGACCAAGCCGAAATTTACGGCGATA 9780 36 100.0 30 .................................... AATACTGCGCTAATTACACCGGTCAATGAT 9846 36 100.0 30 .................................... AAAGCAGTCAAGCTCTCTGGCACAGCAACT 9912 36 100.0 30 .................................... TTCAACTATTTCAGTATCGTCATAGATGCT 9978 36 100.0 30 .................................... CCTTCAAAAACATTTTAATATATACGGATT 10044 36 97.2 30 ...............T.................... GCTTGCGTGAGCGATAATACCATTCGGAAA 10110 36 97.2 30 ...............T.................... TGAGACTTTGGAAGAAAAACAATTTTTAGC 10176 36 97.2 30 ...............T.................... TGGTAATGAACTTTACGGGCTTTAGTACAT 10242 36 83.3 0 ...............T.............TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GCTTTAGAGCTATGTAGTTTTGAATGGTCCCAAAAC # Left flank : GCTATCGTTCGCGGGGAAGGGCTCACGCAGATGAAAGGATGTAAATGTTCCTTTAAAAGCTATGCCGTGCTTAAAACCAGTCAGATAGTTCAAGTTAGCCAAATTTAAAGAATAATGATGTGATAGGTAAAGGGGAAATGAATGAGGCGGACCGTAAATTAGGCGATTTTTACTGTGCTTATCAAGGTAAAAATCGCTCATGCTCCGCCAATTAACCGTAGAGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTCCGCCTAGAAATTAATCTGAGAAAGCTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGCTTTTGCCGTATAATAGTGCTATGAACGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : AAGTGTTAGCTCCGCCTTTCCCCGTTTGATTGCTAAAACTAAAAATAAATTTGAAAACTGTACCTTTGTCAATGATGTGAGACCAAAGCAGGGATTGAAAGAAACTGAATATGCTATTCTCTAGAAGGAGCTAGCTGCTTCTAGTTTTTTTCTTGTTTCGATGGGTGAGAGCCAGTCAAGGGTCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTAGTTTTGAATGGTCCCAAAAC # Alternate repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //