Array 1 2531982-2531648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086377.1 Proteus mirabilis strain LB UEL H-11 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2531981 29 100.0 32 ............................. CTTTAGACCATTTAGACAAAGGGGAATTGAGA 2531920 29 100.0 32 ............................. AGTGAGTGATTGCTCAGGTTTTTCTGGATACT 2531859 29 100.0 32 ............................. GCCTGATGCTGTTGTCTGATGTTCCTTATCCC 2531798 29 100.0 32 ............................. GCACATGGGGGTACCGATGCAGAAGAGAACCT 2531737 29 100.0 32 ............................. TGACTTTAATTCCGTTTTCTTTTGCTTCATTA 2531676 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCATAATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGCCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCTGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2541203-2540685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086377.1 Proteus mirabilis strain LB UEL H-11 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2541202 29 100.0 32 ............................. TGAAGCGGAAACCACCACTAATATTATCGGTG 2541141 29 100.0 32 ............................. CTATGGATAACTTTAACACCGATGAGCCATTA 2541080 29 100.0 32 ............................. AAATTCATGGTCTTTCTGGTGAAGAGCAGGCT 2541019 29 100.0 32 ............................. TTACTCACCTCGGTATCTACCGCTTCCTGATC 2540958 29 100.0 32 ............................. CGGATTTGTTGGGTGAATATTTGTCGATTGTC 2540897 29 100.0 33 ............................. CAGTACGTTCCTTTTCATCGTGGGATCTCAATA 2540835 29 100.0 32 ............................. GTGTTCGAATACCGCTTGCCCGCTGAACCCCA 2540774 29 100.0 32 ............................. ATGACTAGACCAGCACGCGGTGAGCGTAATAA 2540713 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAGTTTTGAAAAAGTCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGCTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCAAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAGTTTTCTTCTTCATTTCAATATATTNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3275110-3274770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086377.1 Proteus mirabilis strain LB UEL H-11 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================== ================== 3275109 25 100.0 38 ......................... AACCCGTACAGGTAGTAACGGTCAGATCACCTATTTAA 3275046 25 100.0 38 ......................... AACCCGTATAGGTAGTAACGGTCAGATCACATATTTAA 3274983 25 92.0 38 .............A..........A CGCCCGTAGAAGTAATAATGGTAATACCATCTACCTAA 3274920 25 80.0 38 .............A..C.CA..C.. TACCCGTACAAATAGTAACGGTGAGACCATCTATCTCA 3274857 25 84.0 38 .............A..C.CA..... AGCTCGCACAGACAGTAATGGTACTACCATCTACAGAG 3274794 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ====================================== ================== 6 25 92.7 38 ATAAAAGTGGTCAGGTTATTGGTTC # Left flank : GCGTTGTGATCACCTATAGCTTAATGACCTTTTTTTTAACCTATCATGGGTAGATAACCGTAAATAAAGGCACGATAACATGCTGATAATAAAATGGAAGGAAGTAAATAAAGTAGGGTTTAACTCATCAGTCTGTTTTGGTGCGAAAGGGGGGACTTGAACCCCCACGTTCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACTCTCGCAAAACACAATATCTTAATAGATAGTCGGCGAATTTTATGCTTTTTAATTTTGGCGTCAATTATTTTTATCAATAGATTATCTTGGAGATAAAAATAAAACAGCGAGAGTTATAATATAAAATAGATAGATTCTATTTTTAGAACTAAGATAAATAATTATGACAAAAACCGATTATGCAGTAGGTTTATGAGGTTTTTTATGAAAAAAATCAATATATTGATTGTTATCTTGTTTGTGATTATATCAAGTAATGTATATGCGGAAATCTACAAAG # Right flank : AAAAAAATGATAATTTCGTTTGAAAATAAAAGTGTCTGCTATTAGATGACTGTTTTCAGTTATAAACAGAAGACCGCCAGTAGTTGAAAAATCAATTACTGGCGGTTTTTATAATAGTGCTGGTGATTACTATTTCTTGGTTGCTTGGTAAACTTTGAATTTACCTGTTGATGCAAGCACTTCATGAGAGCCAAACACGTGATCAAGAATATCTTGATAAGGTAAGAAAGCATTGGCAACAATACGCAGTTTACCGCCTTTTTTCAAAAAGTTAGGCGCGAGACGAATAATGTCTTCTGCAGCTTGATAGCTGGTACCTAAGCCATCATGGAAAGGAGGATTAGAGACTATCCAATCATAAGTTTCTTCTACCGCAGAATAGACATTGCTTGCAATAACCCGTCCTTCTAATTCATTAACGTTTAACGTGGCAATACTGGATGAAATAGCGGCTGCATTGACGTCACAGAGTGTGAGTTTTAACATCGGGTTTTTCTTGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAAAGTGGTCAGGTTATTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //