Array 1 362296-363727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBE010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 325 A NODE_2_length_542660_cov_36.7886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 362296 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362357 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362418 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 362479 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 362540 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362601 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362662 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362723 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362784 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362845 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362906 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362967 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 363028 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 363089 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 363150 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 363212 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363273 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363334 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363395 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363456 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363517 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363578 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363639 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363700 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379859-382006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBE010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 325 A NODE_2_length_542660_cov_36.7886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379859 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 379920 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379981 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 380042 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 380103 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 380164 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 380225 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 380287 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 380348 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 380409 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380470 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380531 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380592 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380653 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380714 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380775 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380836 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380897 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380958 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 381019 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 381080 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 381141 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 381202 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 381263 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 381325 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 381428 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 381489 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 381550 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 381611 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 381672 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381733 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381794 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381855 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381916 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381977 29 96.6 0 A............................ | A [382003] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //