Array 1 238239-244124 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014510.1 Thermotoga profunda AZM34c06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 238239 30 100.0 36 .............................. TCGAAGAATGGAGAAAAATGGGTTTTAATGTAATCT 238305 30 100.0 37 .............................. TTTTTATGAATTCCTTGGGTACAGTAGTCATTCATTT 238372 30 100.0 37 .............................. TATGTATAGTGCTTGCTCAGGATTCATTGTCTGTGTG 238439 30 100.0 36 .............................. AATGCTGGGTGTCCATGACAGCTGTGAGCCGTCCTT 238505 30 100.0 36 .............................. GTTTGACTTTTTCGATCAACTCAGAGGGTAGAATTG 238571 30 100.0 36 .............................. GATTTTTGCAAAACGAAAACCATACCATGTGAAAGA 238637 30 100.0 37 .............................. ATTATGGAGTACAACAGAGAAATGGGTATTACTTTAT 238704 30 100.0 36 .............................. TTGGGTGCCCATGCACCCAAAAAGGAGGGAAATTTA 238770 30 100.0 37 .............................. TGGGTGCATGAGCACCCAAAAAAAGGAGGGAATTTTA 238837 30 100.0 36 .............................. CAGTTCTTCCACCATGATATGCATTTCTTTCTAATT 238903 30 100.0 35 .............................. GGGGGTGAGATTAATAAGAACAGAGAAAGGAACAC 238968 30 100.0 37 .............................. TTACACGTTTGACTATTGACATGTAACAAATATCAAA 239035 30 100.0 35 .............................. TTACCACGAATCGACGGTGCTATTGAGTTGAATTC 239100 30 100.0 37 .............................. TCAGAGGTCTTTATAAGCACTTCAAAGTGCCAGTTGT 239167 30 100.0 36 .............................. AGATTCTCCACGCTTTGCTCATACACAGCAAGCAAC 239233 30 100.0 37 .............................. TTGAAGGTAATCACGAAGCGAGAACGAGGAAGCAGGT 239300 30 100.0 36 .............................. CCCGCTTTTACTGTTTCAGTACCACTTGCAATCAGT 239366 30 100.0 36 .............................. TTGCATCCGAAGCAATGCAACCATTATTCGATGCGT 239432 30 100.0 37 .............................. GATGCCTCAACTAAAAAAGATGCACTTATAAAACTCA 239499 30 100.0 37 .............................. TTGAAGGGTATGGCATTCAGCCCAATCCTAACACATA 239566 30 100.0 37 .............................. CATTGATCGAAAGAATTGCTGCTCTGGAAACGAAAGT 239633 30 100.0 36 .............................. CGTTTCTCGTACTATGCTTGAATTACCACGAATCGA 239699 30 100.0 37 .............................. CAGGCCTTTTTGCTTAGTGAGGTGAGAACAATGCCTT 239766 30 100.0 36 .............................. CCAACTGCAGAATTTCAGGATCATCCGTTTCTACCA 239832 30 100.0 37 .............................. TTGCAAAACGCTCACCAAGATCGGCAATGGTCTTTAA 239899 30 100.0 36 .............................. TCTCGACTATCTTCATCATCTTGTGAAAGCTCATTA 239965 30 100.0 36 .............................. CGGTGAAGATCATGACGAATCAGGATTCAGGATTGT 240031 30 100.0 37 .............................. GAAAAAGAAAAGCCCGCATCAAAGCGGGCATATCTCG 240098 30 100.0 37 .............................. ACAATTCAGCGTCAAGTACAGACTTAGCCTTACTACA 240165 30 100.0 38 .............................. CAAAATTGTAGCCACTATTCCTGCAAACTCGGACTGGA 240233 30 100.0 36 .............................. AATTAGAAGCAGGAAAGAGACAACCATCGCTCCGAT 240299 30 100.0 36 .............................. CTGCCAAAGAAGTCTGTTTATTTCTGTTATCTTATC 240365 30 100.0 37 .............................. AAAGTACTCCTGCACCGAAAGTAAAAGTTTCGCCAGA 240432 30 100.0 36 .............................. CTGGCAAGGAACGCTGGGTATACAGTAATGTTTTGA 240498 30 100.0 36 .............................. GGTGGAGTGTATGTTAAAGGTTATTGGTGAGAGTTT 240564 30 100.0 37 .............................. GTTAGTGCATTAAGTGTTGCGTTTGTAGTGAACTGGA 240631 30 100.0 37 .............................. GGTTGAGAAAGACAGATCCTGAAGCCTGCAAAATCCT 240698 30 100.0 36 .............................. TTTGGTTGACGAAGCAAACATATGGTTTAGTTCTCG 240764 30 100.0 37 .............................. GGGGTTCGTATTATCCAGACGCTTTAGTTCGTGTATA 240831 30 100.0 38 .............................. CTATGTTGTGCCCACCAATTCAGCAAATCTTTGTCCCT 240899 30 100.0 36 .............................. AATGCATCAACAAGTTGTGCACCTTTTATAGTTATG 240965 30 100.0 38 .............................. ATCTATGCTTAAATGTGGCTTTAAAATTATTACACACG 241033 30 100.0 37 .............................. CAACACCACTCATGTCAACATTTACATTTAATGTATC 241100 30 100.0 36 .............................. AAGAAATTTACATGATTTTCTGATTATTTGTAATAG 241166 30 100.0 38 .............................. CACTTGATCTTGCACTTGTTGGGGTCAAGAAAATAATC 241234 30 100.0 38 .............................. TGTTCTTGCGAACGCGAAATAGTTATGAAAAGTGTGTA 241302 30 100.0 37 .............................. CGTGTGAAGGCTGGTTTATCATCAGCCCTGAGTCGAT 241369 30 100.0 36 .............................. TGGCTTCCAGGGTGGAAGGAAGCAACAGAAAATTGG 241435 30 100.0 39 .............................. GTCTGTATCACAATAATATACATTTTGCCATCCTGTTTC 241504 30 100.0 37 .............................. TTATCGGATTTGGAAAGAGCAGATCGAGCTCGAACAG 241571 30 100.0 36 .............................. TGTCTTTAGTCTCGGTAGATGTCGAATTGTTCACAA 241637 30 100.0 36 .............................. CTCCTTCGCAAAACTGCATTTTCTGGTATTAAAGTT 241703 30 100.0 36 .............................. ACTAAAGAACGGCTCACAGTCATGGACACCCAGCAT 241769 30 100.0 36 .............................. CAATTCAATATCTGCTCTAAGAACGTTTGCATTGTA 241835 30 100.0 37 .............................. CTGAGCAACACGCTTGAAAAGATACCTTACGATGTTC 241902 30 100.0 37 .............................. TGTGACGGGAGCAGAACTATCATCAGGAGTGAGAACT 241969 30 100.0 36 .............................. TGAGTTGTTTGAGATGAAAAAGCAAGTCTTGATCCG 242035 30 100.0 37 .............................. TTGGTTGTGTTGGTGTTTTGCCTTTCAAGCGTGACTC 242102 30 100.0 36 .............................. TGCCAATCTTCGTGCACTCATGCCTGTTTGAACCGA 242168 30 100.0 36 .............................. GTGGTGATCGTTTCAAGATGCGATTTTTTGACTCAT 242234 30 100.0 36 .............................. ATGGTGAATGGAAAATTTCTTGCGCAGGACTTCTGG 242300 30 100.0 37 .............................. AAGTTTGTTTTTGAACAGCAAGCGGTATCGAATCTCT 242367 30 100.0 36 .............................. ACGATGTTGACAAAGCCCAAGCAAATGTAAATGTCA 242433 30 100.0 38 .............................. CCTGCGGCAGACAAAACACGTTCATACTCTTCAACCAG 242501 30 100.0 38 .............................. CCTGCGGCAGACAAAACACGTTCATACTCTTCAACCAG 242569 30 100.0 36 .............................. ATTTTCCATTCACCATCGACGTATTTTTTGTAAGGA 242635 30 100.0 36 .............................. TGTAAGGATAACGCTTGTTTTCAGAATCCAAGAAAG 242701 30 100.0 37 .............................. GTGATGGGGGGGTTTAACCTCCCCGTTTTGAAAGGAG 242768 30 100.0 37 .............................. TCAGCCACTCTATATCACCTTCAAAACCGTTGTAAGA 242835 30 100.0 36 .............................. GCCTGATAGTACTCTTACCTGTGATCTTGGCTCTCT 242901 30 100.0 38 .............................. CTCTCATCGCGTTGAATCGCTGTTTTTTCTGTATATAT 242969 30 100.0 36 .............................. TTTTTTCTTCTGGAGAGTTGTTTATCAGCAACGAGA 243035 30 100.0 38 .............................. CCAAATGCGAGCGCTAAATTATCGGGAGTTGCATCGAG 243103 30 100.0 37 .............................. ATGGTAGATGTGATATGCCAGATCATCTCGTTGCTGA 243170 30 100.0 36 .............................. TTGTTGGTATTTACAGAGTAATCACGTCTGAAAAGA 243236 30 100.0 36 .............................. GCAAGTTGTTCGCTTGCGGTTTAGGTTGCTCAGTTT 243302 30 100.0 36 .............................. CTCTTTCAGAACGTTGCTGATTCTTCATTTCATCAA 243368 30 100.0 37 .............................. GCGTTAGAAGATTATAAAAAGGAGATGTGGCAAAAGA 243435 30 100.0 36 .............................. GTTATAAGCGTCGTGAGGATAACCTTACGACGCTTT 243501 30 100.0 36 .............................. GTATGGTTTCTGATTTAACGGTAACTGGTTTCTTGT 243567 30 100.0 36 .............................. TAAGTAGTAAGAGTGAGATATACTTCTTCATCAACA 243633 30 100.0 37 .............................. CTTGAAGACAAAGACATTATGCATGTTGAGGTTACTT 243700 30 100.0 36 .............................. GCTTTCCACCAACAGTCTCTTCACGTGATTCAGGGA 243766 30 100.0 36 .............................. TGCAATTGAATGTGTAAATCTTGTTGTTGAAGAAAT 243832 30 100.0 35 .............................. TATTATAAATCTTTCAAAACTGCAGAGCGTAGAAT 243897 30 100.0 36 .............................. GAGGTGCCTTTATGAACACATATTTGAAGTATTCGT 243963 30 100.0 36 .............................. TGATTATGAGTGTATTGTATTAAATAGATTGAAAGG 244029 30 100.0 36 .............................. TGAGAATCAATCTGTTTATAGTCAAATACTTCTCCT 244095 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 89 30 100.0 37 GTTTCCATTCCTCTTAGATTCGATTGAAAC # Left flank : ATCCTATGCACATTATCCTTGGCATCAAAAACCTAACCCAGCTTTCAAGTACATCAAGGTTATAAAAACCGATTCCATGACATTTGAAGAAAAAGAATTTATAAATACAATTTTGACACAGTTTGTGGACAAACTCGAAAACTCCTATGTACGTGCAACTCCAGATTACCTTGTGGGATGGGCTTATAAATCTTTTAAAAGCACATGGACTGGCACTCCAGATTACTATTGTGTAATGCCCATTGGTTATATTCATGTTGAAGTTTCTCTGCCAAAACCGAATTGGAAACCGTTCATTATTGGACATGTTATCTTAGAAACTCTTTCTAATTTAATCGATTCTTCCAGACCATATGGTCCCATCCTTCAGGATCATAGGTACTTATATGTGCGTGGATATAATGAAAATGGTGAAGTTTTGGAAATGGCTTTCGATTGGTATGATTTAACAGATTCACTATATGAGGAATCTGAAATATTTGTTCGGTTTGTTTCCAGCC # Right flank : CTCATATTATTCTTAATAGAATATTATCATAAGATTTTATATTTGTCAAAATTAGCTTTGCTACGGGGAATAGAATAAAACTAATACCTTAGTGAATTCAGGCAAAATGGTTTGTCACTTGTGGTTTTGAACCATTCGGAATTTTTTCATTATCTAAGGTTCACTCAGAAAATTGGCATTTTCACGATTTTTATTAACAAAACCAAAAAACGATTGTGAATTTTCACAATGTGGTTTAAGTCATTATTATATCAAAAAATCTCTACTATGATATATATACATAGTATATCGATTATCACAATATAGTTTTAATTTAACAATTGATATGTGATAATTCATTTTACGCAATTTCGAGTGAAAACATGTACGTTTGGATGATTAATATTACTTCACTATTACATTATGTTTAACAAGGAAGTTTGTGAGTCCTAAAGCGCATTTATCAAAAAATCATTGTTGCTTCACTTCTTTCAAAGCCTGTCTGATCGTTATACCAGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCTTAGATTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 263499-266414 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014510.1 Thermotoga profunda AZM34c06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 263499 36 100.0 41 .................................... CAACTTTACTTGTTCGTAAAGGAAAGATACCCCAAGCAGAA 263576 36 100.0 40 .................................... TATGGGAAGTTGAAAGTTGTGCAATTTACTTTAACGGACA 263652 36 100.0 40 .................................... GGGATGACGATTAACCAACTGTATATGTTCTTAAAGACAC 263728 36 100.0 40 .................................... GATTATAACACAAATATTAAACAGCGGGGACAGTTAATCC 263804 36 100.0 40 .................................... ATCCGAGCAAATTTTTAACAACATCACAATCACAATATCT 263880 36 100.0 40 .................................... TCGTATACGTGTTCAACGAAGCAACATACCAATTAGTCAA 263956 36 100.0 40 .................................... TTTCCGGTTTCAGTCAGTGTAATCATCGAGCCATATAACA 264032 36 100.0 41 .................................... ATATTTTATTTTATCGGTAGTAACGTGTTTAGCCCCCATGA 264109 36 100.0 42 .................................... CGTATACATATTCAACGAGGCAACCTACCAGTTAGTCAAGAA 264187 36 100.0 40 .................................... AATTCCTGATTCGTATGGCGAAGTACTACGGGGTCTATTG 264263 36 100.0 39 .................................... GCGCAAAAACTTCTTTTCCTAGTAACAAATGACATCGAA 264338 36 100.0 40 .................................... TTTCTAATACGTATGGCGAAGTACTACGGGGTCTATTGAC 264414 36 100.0 39 .................................... TACAAAAAAGACAGCAAGGTCTTCTTTCAGATTTCCAAG 264489 36 100.0 39 .................................... AGTACTACGGGGTCTATTGACCCCGTAGGCTTCGCTTAA 264564 36 100.0 39 .................................... ATTTGTTTCTCAAACAGCGATATCCTAAGCAAAAGAAGG 264639 36 100.0 42 .................................... GGGGTGGCCGGAATGACGTTGCAACAATTGTACTCATTTCTA 264717 36 100.0 35 .................................... CTCTTGAAACAGAAGTACCCGAAGATCAAAAAAGA 264788 36 100.0 40 .................................... TGTTAAGTATTATTGTTAGAAGGTATGAAGGTGAGACAAT 264864 36 100.0 41 .................................... ATAAAGCACAATTTGTTATATCAACAAACAGTGACTTTAAG 264941 36 100.0 40 .................................... ACAATTTCTTGAGAACAAAATACCCCAAGGTCAAAAGAGA 265017 36 100.0 35 .................................... CTCTTGAAACAGAAGTACCCGAAGATCAAAAAAGA 265088 36 100.0 40 .................................... TGTTAAGTATTATTGTTAGAAGGTATGAAGGTGAGACAAT 265164 36 100.0 41 .................................... ATAAAGCACAATTTGTTATATCAACAAACAGTGACTTTAAG 265241 36 100.0 40 .................................... ACAATTTCTTGAGAACAAAATACCCCAAGGTCAAAAGAGA 265317 36 100.0 42 .................................... TGTCGAGATCAACACCAGCACAGAAGCTTTTGTATCTGGTAA 265395 36 100.0 34 .................................... GTGTGGCAACGGCGTCTGTGTCGTTGGTCACTAG 265465 36 100.0 40 .................................... GGTGAGACGTATATCGAAAGAAGACGCAGCTTCGTTGTTG 265541 36 100.0 39 .................................... AATTTTTGAACTCGACCAGCGACGATGGCTGGTCGAGTA 265616 36 100.0 40 .................................... TCAGAAGCTTTTGTATTTGGTCACGAATAACGTCGAAGCC 265692 36 100.0 40 .................................... GGTTAAGCAAATTCAAGGGCGAAGGATATACGCTAACTCT 265768 36 100.0 40 .................................... CGTTGAGCGTCCCGGACAACATTGCCGTAGTAATGATAAA 265844 36 100.0 40 .................................... TGGTCGAGCTTGTGCGCGTGGGGCGCCGTTTTCGCCCCAC 265920 36 100.0 40 .................................... GGCTGGTCGAGCTCGTGCGCGTGGGGCGCCGTTTTCGTCC 265996 36 100.0 40 .................................... ATCACTTTCTAAGACAGAGATTCCCGAAAAGGAAGGTAGA 266072 36 100.0 41 .................................... TCGCTATACTGAAAGAAAAAGCCGCAGCAAGAAAACTCGGC 266149 36 100.0 40 .................................... ACCCAAAGAGAAAAGTAGACCCAGAAACAGAAAAAGTTCT 266225 36 100.0 41 .................................... TATAGTTGCTATCATAGTAATCATTCTAATTCTGTTTAAAA 266302 36 100.0 41 .................................... ATGAAAAATAAACCATCTTCTAAACGCAAAGAAATTATGAG 266379 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 39 36 100.0 40 GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC # Left flank : CAGTGATATACTTTGTACCAAAATTGTAGTTCTTAAGCGTAATTGCCGAAATATAAAGTTGTTGAACTTCTTTATCTCCGATACTTACAAATGTGTAATCAACTCGTGTTTCTCCTGGACCCACATTCAAACCGTTTGTCCAGTCACTAATAGTTGTGTTATCAGAACATTTGCCTTTGAAATCAATTTCGTAGTAGTCGATTTCTGTATTTCCGACATTTGTTAATGTATAATCAACCTTTAGCGAGCCTATGATCGTTAATTCAACTTTCGTAATTCTAACTACGGCGTCAATACGAAAGAACAAATTTGTACAACCTGATAGCAGAATAACCGTTAAAACAATCAAAATAAGTAAAATAAGTCTTTTCATAACCACCACCTCCTAATTATTCCCAAAAATTTTTCCAATATAGAAAAAATGTACACCTCACATAAGAACAAAGGGAAAGAAAGTCCGCAAACCGAACAGTAACTCGCACCCAAACCCATCAGAGTTA # Right flank : CAGTACATTTCTAAGTATATCATAAGTAAAGGACTATTTGTGCTTAAAATTCATAACCTGGTGTTAATAATGTTAGTGCATGTCTAACATCAACCCTTTTTCATCACTCTTTTTAGCTTTCCATGCGGATTCAGGACCTATTTTCTCAAAGTGGCTTATTTTCGTTAGTCAACTTTTTGAAGGAGGTTAGGAATTCTTGTTTGGGTTTTTTACAAATTTCCGTTTTTGCGATCTGTGCCCCTTTTGCTTTATTTTTTCACTTGTCAATGACCCACTTCTTAACCTTTATAGGCTTGAGAAAACGATTTTGTATGTCTTGTGTTTATGTCTAAGTGAACTACTCAACCTTATAATTAGTTTTTCAATCTATTCTGCTTTTTCAGAATCGCGAGCCTTGTCTTCTTTTGCTTATAGAAACAAGAGTTTTCTGATTGATAAAGCTTCTATTTGTCTTAGACTGATAGAACTTCAAGTCAATCTAATTTGCTTTTTCATTTTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 1100827-1103530 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014510.1 Thermotoga profunda AZM34c06 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1100827 36 97.2 41 ......................G............. TTGAATTCGAAATGGGTTCTATAACAATAGAACCCGACATA 1100904 36 100.0 41 .................................... TTGAATTCGAAATGGGTTCTATAACAATAGAACCCGACATA 1100981 36 100.0 41 .................................... TTGAATTCGAAATGGGTTCTATAACAATAGAACCCGACATA 1101058 36 100.0 41 .................................... GCACAAATAGCCAAAACAGAAAAAGGTACATTAATACTCAA 1101135 36 97.2 41 ......................G............. TATATGATCCCGCAAACAACGGGCTGTATAGAAGAGATATT 1101212 36 100.0 41 .................................... CAACTGCTGAATTTGATTTTTGTGAAGTAGAGGGGGTGTTT 1101289 36 100.0 39 .................................... CCGCAGCAACGCCAACGCAAAAGCTTCTCTTCCTGGTAA 1101364 36 100.0 39 .................................... ATTACATACACTCGTTCAATATGGATATTCTAAAGTTAG 1101439 36 100.0 41 .................................... TTGAATTCGAAATGGGTTCTATAACAATAGAACCCGACATA 1101516 36 100.0 40 .................................... ACAGAGTCGCAGTATACGTGAAAAAAGAGGAGGAAGGATC 1101592 36 100.0 40 .................................... TCTTTTCATGGTCACAAACGACATCGAAGCTGTGTCAACG 1101668 36 100.0 40 .................................... AACTAGATCAGATCTCCCCCTGCTGGTCGACCAGCAGGGG 1101744 36 100.0 40 .................................... TGGATTCGTCAGTGCGATCGGACACGCAGATACCGCAAAT 1101820 36 100.0 40 .................................... TTGTTGCCGAGTTGGGTCTTGGACGTGTGTCCAAGACCCA 1101896 36 100.0 40 .................................... GCAGCAAGAAAAGTCGGTGTCGTCGAATTCTTAATAAAAA 1101972 36 100.0 38 .................................... ATCCTTGGCTAAATCAAGTCCGGCGCAAAGACTTTTAT C [1102007] 1102047 36 100.0 39 .................................... AAAATGATACACATAACAAACGCAGTCATAATACCAACA 1102122 36 100.0 41 .................................... AGCACGAGGGACTCCCTCTCGTGCAACATTGTGTGCACGTG 1102199 36 100.0 40 .................................... ATCCAGCCACAGCAGAAGTCCTTGCAAAAGCGACAGTCGC 1102275 36 100.0 40 .................................... ATCCAGCCACAGCAGAAGTCCTTGCAAAAGCGACAGTCGC 1102351 36 100.0 40 .................................... CCACACCCGATAACGTAGCTATTGCCGTACTCAGAGAAAA 1102427 36 97.2 39 ......................G............. CCCTGTAACCCGGGTGGGCGCCCACCCGGGTTGCAGATG 1102502 36 97.2 40 ......................G............. CGGCGTCTATTGAGGCGCTGTAGAACTTCGCTAATATAGG 1102578 36 97.2 42 ......................G............. TCCTTAAGGTTTGTGTTCATTTGTTCTAAAGTAGAGATCTGT A [1102613] 1102657 36 97.2 40 ......................G............. AGGTGGCGAAGATAGCAGATGTGATTGTGAGTCCGAAAGG 1102733 36 97.2 42 ......................G............. CAGCTCGGAAGTTCCGAGCTCCCCCTGCTGGTCAACCAGCAG 1102811 36 97.2 40 ......................G............. ATGAAAGGTATAGTTCAAATGGCAATTGGTGGTGTAGTTG 1102887 36 97.2 39 ......................G............. TTTTTGGAAAAAATTTGATTTTTGATGTACTGCCAACAG 1102962 36 97.2 42 ......................G............. TATATTATGATTTTACTTTTAAGACTTTGAATTATGAGAAAG 1103040 36 97.2 39 ......................G............. TGGGATAGGATTTGGTTTGACTATGTTAGCAGTATGGAT G [1103075] 1103116 36 97.2 39 ......................G............. GCTGTCTAAGATGGGAGGTTGAGGCTGATGATTAAAACG 1103191 36 97.2 40 ......................G............. TGAAGATAGCTATGCAAGATGAAAATTTTGATGGGATAAT 1103267 36 97.2 39 ......................G............. TAATCAAAGCAGATTGTTCTGGATCAATAGTGACGTCAA 1103342 36 97.2 40 ......................G............. ACAGACAAGGCTATATAATCGTGTTTCCTTACTATGCTAA 1103418 36 97.2 41 ......................G............. GGATCAGAGGACTGAGGAAAAAGAGAGCAAAGAAGACAGCG 1103495 36 97.2 0 ......................G............. | ========== ====== ====== ====== ==================================== ========================================== ================== 36 36 98.7 40 GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC # Left flank : TGGTTGCTGCTCATCGACAAGGGTCATCCTCCTTCGCATTTCTTCCTCAGCACCTTTTTCGCCTTCTTTTAGCATACGAAGGAGCTCGTACTGCGAAACAATTTTAGGATTCTTTTGCTTCTTTTTCATATCTTCACCCCTTGCATGTTTACTAATTGTATTTTATGGTTTTTCAATTACTCAAAGTTGTAGTTAGTATTACAGGAATTATCAAAAACAAAATTTTTCATTTGTCCAGTCGGGAAAATCCCGTACAAAACTTTTTGCAAGATTTTATTCTCGAAAAATCTATTTTGACATGCCAGATTCACTCAAAATTTGAATTGTGATGTTTAGAGAATTTTCTTGGTGATTTCAGTCAATCTTTAAGACTATCATTTGAGATCTTTTCTGTATTTAGAGAATATCTGTCAACACACAAGGCTAAATTTGGAAAACTTTCAGAGAGTTTTCTTTCGAACAGTTCATTAAATAAAAAATGCGGGCATTAAGCCCGCGTA # Right flank : CCGTACATTTCTAAGTATATCATAAGTAAAGGACTATTTGTGCTTAAAATTCATAACCTGGTGTTAATAATGTTAGTGCATGTCTAACATCAACCCTTTTTCATCACTCTTTTTAGCTTCCCATGCGGATTCAGGACCTATTTTCTCAAAGTGGCTTATTTTCGTTAGTCAACTTTTTTAAGGAGGTTAGGAATTCTTGTTTGGGTTTTTTACAAATTTCTGTTTTTGCGATCTGTACCCCTTTTGCTTTATTTTTTTACTTGTCAATGACCCACTTCTTAACCTTTATAGGCTTGAAGACTGTCTTTTATTATATCACAAACAATTAAATATCGTCAAATAGAGGAAAGATAGATTTCACTTGGTTGAAAGATCAAGGGTTATTATCAATTTGCATGATATGTAAAAGACAACGAAAAGCAAAATGAGTATATAGTTTTACTATTCATGGATTGCATAGAATCAATTAATCAACTATTTGGTCCCATATAGAGAGTGAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC # Alternate repeat : GTTTCCATCTCTTTCAGAGAGAGCCTTCTTTCGGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //