Array 1 86-442 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000015.1 Clostridium tetani strain 2017.061 contig_0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 86 30 100.0 31 .............................. ATTTAGATGAATTATTAATTACAGCTTTAAA 147 30 100.0 39 .............................. TTTTAAAAACTTTATTAATAACAAACATAAAAATTACAG 216 30 100.0 35 .............................. TTATTAATTGTTACACATTATAAATATTTATATGT 281 30 100.0 37 .............................. GTCAAAATCCATTCTTTGTTAACATTAAAGACTTCAG 348 30 100.0 35 .............................. TAATATTTCTATTAATTTTTATTTCAATAAAAAAT 413 30 83.3 0 A.....T...A........TT......... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.2 36 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : ATATTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTTTTTTTGTATACTATTTCG # Right flank : AAACAAAAAAAGTAAATTTTATGAATATATAAATAATAATTTAGATAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [95.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 94-1049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000003.1 Clostridium tetani strain 2017.061 contig_0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 94 30 100.0 38 .............................. GAAATAGTATACTGTAAAAGTAGTATAAAGAATAAAAA 162 30 100.0 36 .............................. ACAAAGATAATATATGATAGAATTTAATTAAAGTTA 228 30 100.0 35 .............................. TTAGATTCGCTAAAATTTTAAGAGGTGAAATTTTA 293 30 100.0 36 .............................. GATTATAGGATCTATTGCACTATCGCAAAATATTGC 359 30 100.0 36 .............................. GGAATTTCTAAAACCATTAATCTTATTCCTTTATCC 425 30 100.0 37 .............................. TTACACACTGAACACAATCTATCGGTTCAGTTTTAAA 492 30 100.0 37 .............................. GAGTAACAGGTGGCAAAGGATATTATTTAAATTATAG 559 30 100.0 34 .............................. AGAATTACACATTGCATGTAAAAGAATTTTTAAA 623 30 100.0 38 .............................. TCTTTACTAACAAACACATAAAAAAACGGATAACGTTT 691 30 100.0 35 .............................. ATAATTTCACTAGATAGGTCTACTAGTTTACGTAC 756 30 100.0 35 .............................. AATTGTAAACGTAATATGCATGTTCATATTAATAA 821 30 100.0 36 .............................. ATCTTCATGAATACTTATTTTACCATTCTCTTGTTT 887 30 100.0 37 .............................. TTAAAATATTTAATTCTAAAAACATTTCTATTAGCTC 954 30 100.0 36 .............................. TTTTTTTATTTATTTATATGAAAATTTGTAAAATAA 1020 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : ATTTTTTTTATTAATAATTTATTTTTAAATTTATTTTTAAATTTATTTTTAATAATACTTTTAATATTTAATTAATAATTACTTTTTTTTTAAA # Right flank : TCATAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 66-1221 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000016.1 Clostridium tetani strain 2017.061 contig_0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================= ================== 66 30 100.0 35 .............................. TAATATTTCTATTAATTTTTATTTCAAACGTTAGG 131 30 100.0 36 .............................. TAACGAGTAAAGTCGAAGGTAAAGATATAGTCTGAG 197 30 100.0 36 .............................. AAATTGTACTGCCGAGGGTGTATTAGAAATACTTGA 263 30 100.0 35 .............................. GAACCAATCTGGTGGAAAATCTAATCCTAATCTAA 328 30 100.0 105 .............................. TTAAAAAAAAATGATAATATAATTGTGAAAAATAAAAATTATTAGAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATTAC 463 30 100.0 38 .............................. CAAGAGAAGGAGAAACTATTAGAAGAGTTACAATTAAA 531 30 100.0 38 .............................. CTAGATCTACCTACATTTATTATGTTTTTTACATATTT 599 30 100.0 35 .............................. TTTTCTTCAGATAATAGTCTAAAAAATGAGCTTAT 664 30 100.0 35 .............................. CAAAAAATTGATGAACTAATAGAAAAATATAAGGA 729 30 100.0 36 .............................. TGGTTTGAATATATATATACTCTGCTAAATCATCTT 795 30 100.0 37 .............................. TTCTTTAATCACTTCTTTCCCATTTTCCCATATTATC 862 30 100.0 36 .............................. CAGTTTAACAAAAGATATAGCATATCACACGTTAGG 928 30 100.0 36 .............................. GTAAATTAGATTTCTTAATCACATTAATATAGTCTA 994 30 100.0 35 .............................. GGAGGGATAGAAGAAACATATTTTAAATGTCCTCA 1059 30 100.0 36 .............................. GTAAACTGTAGATGTAAAAAAGAAGAAAGCAGACGT 1125 30 100.0 37 .............................. GGAGAATTACCAGACTTAAATAAAATTATAGATGTAT 1192 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================================= ================== 17 30 100.0 41 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : TTTTTTATACAAATTTTTTATTTTAATTGTTTAATATTATTTTTTTATTAAATTAAATTTTTTTTG # Right flank : TATAACTGTAGATTTTAGATAAAATAGGTATAAATTGTATCAGTAACACTATTCGTAACAATTAAAACAACTATATATATTAGTTGGATACTGATACCCTAAGAAATAATAAGCACTTTATTTTTTAATATTAAATGAAAGTAGGTATAATGTTAGATTCTATGAAGTTTATGAGTATTTTAGTAATATTACTATTTCAAATGTTATTAAAACCTTTTTACAATGTTTTGTATATCTTATGTTTATTATGTATAATTTAACCGAGGTTATTTAAATAAAGAAGAAATAGATATGAAGAAAAGTTTATTTTATAACATAATATGGATGGAATATTATCCATGATAAAATCATTAGTAACTACACATTTTTAATCTATATAATTATAAAACCAACATTGGGTAGAACTTTATCCAACGTTGGCTTTTCAATAAAATGTAAGATTTTCTGACCAAAGGAAGAAAATCCTCCATAATTATTCATTATTCATTGTTACTTGTTCA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [96.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 69-493 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000004.1 Clostridium tetani strain 2017.061 contig_0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 69 30 100.0 36 .............................. TCTTCTAAGTGCATCTTTACTTTTTATTTTTAAAGA 135 30 100.0 37 .............................. TTAGTTTATCTCCTATATTTTCAATCATATCTAATAT 202 30 100.0 35 .............................. GCTAATGTTCCTAAAAGAGCATTTGCTTCATCAAG 267 30 100.0 36 .............................. TAAAAGCATAGAAGATAATGTTTTAATAATATATAA 333 30 100.0 36 .............................. GGATTTCTTCTTTCTATTCAACTGTTTATGTATATC 399 30 100.0 35 .............................. GAATTTAATGCTAGAATTAAAAACTTAGATATGAA 464 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 ATTTACATTCCAATATGGTGCTACTAATAC # Left flank : AATTTTACTTTAATATATTGTTTTAATATTAATATTTTTTTATTTACATTTTTATATTGTGCTATTAAA # Right flank : CGCGTTCACCCACAATATGCTATATGCCTATAGTAAAAATCCTATTTCTGTCTATCTACTAAGTTGAGACTTCTTATAAGCTATTATTATAATACAAGTTATGTAAAATAATTTATAAACTATTAATATAACTATAATTGTCTACTCCCCTATATTTTAACATCATCTCAGGTAGACAATCAAATAAAGTTACTAGTTCTATCCTCTTTTTTACCCCACATATCTTTATTTAACCACTTTTTACTTCTACTTTTAAATAATATTACAGAATCTTTATCTTTTCTTATTATACTATCTAATTCATATTTTAGCTTAATTATTTGTGACTCTGCTAATTCTCCTTCAAATACTGAGTTTTGAATATGGGACAAATATTTTTTGCATGTTTTAAAAGTTCTGTTTAAAACTCTCTGCCCATCCTCATCACTTTTTATATCATAAACTAATATAACGTACATTTAAACATCTCTCCTACCACCATATTTTAAATGGTTCATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAATATGGTGCTACTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [91.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 115743-115411 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000004.1 Clostridium tetani strain 2017.061 contig_0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 115742 30 100.0 34 .............................. AGCGTCAGATAGCTTTAAGAGAGCATGTTTTAAC 115678 30 100.0 34 .............................. TTCCATATATTCGAATTTCGAATTCCCCAATATT 115614 30 100.0 37 .............................. TTGGGAGTAAGTTATGCAGAACAAGAAGCTATTAAAC 115547 30 100.0 34 .............................. ATGACATTAAGCCTATTCCTGCAAGTGGTGCAGT 115483 30 100.0 13 .............................. TATTTACCTTTAA Deletion [115441] 115440 29 76.7 0 A.A..T.CT.......-.A........... | T [115427] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.1 31 GTTGAACAACAACAAGAGTTGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGTTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCACCTGGTAAATTTTCAGGAAAATGTTGAAGTATCAATGGGTTTATGGTATTCTTAATTTTAAGAAACTTTCATTTTACAGTG # Right flank : TAAGTTTCTTTCTTTTTAATGGATTACGTAGATAGCATATAAATGCTCTTAATAGCAACCTAAGGAAATATATGGTATAATGGCGTTGTTATAAATTTGAAGGAGTGATATTTCATGAGTATTTTAACAAGTTGTATTATTGGACTTGCTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGGAGCATATAAATAATAGTCTTGGATATAGAACACCATTTGCTATGAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTGGTATTATTTTTATACCATTTTCAATATTAATAAGATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATACACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAACAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 118153-117864 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAP01000004.1 Clostridium tetani strain 2017.061 contig_0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 118152 30 100.0 35 .............................. GGCTTTACAGGCGGAAATAAGTGCATTACAGACAT 118087 30 100.0 34 .............................. TGCAGATAATAATTTAGATGGAGGGATTTTATAA 118023 30 100.0 36 .............................. CCTCCTAACTTCCTTTTTATTCCTATTTGAGTTTAA 117957 30 100.0 34 .............................. GAGTTAGAAAATTTCTTAATTAACTGGTTAGTTG 117893 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGAGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGGAATATGCTCTAAGGTATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGCTAAATCACCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAAACTTAGCTATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //