Array 1 455821-454798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055306.1 Mannheimia pernigra strain BNO311 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 455820 37 100.0 33 ..................................... TTTACTTCACAGCTTTGAATTTATCGACCACTG 455750 37 100.0 33 ..................................... GCAGAAGCCGTACAGGCTTTATTTAAAGCAATT 455680 37 100.0 34 ..................................... TGTTCTTTAACATCTTCTAATGCTATTGCCTTAG 455609 37 100.0 33 ..................................... TTTCCGCAGAGTTAATTCTACTCGCTTGACGGT 455539 37 100.0 34 ..................................... GTTTCACTAGTTCTAACTCCCTTTCAGCTAGAGA 455468 37 100.0 33 ..................................... GCAGAAGCCGTACAGGCTTTATTTAAAGCAATT 455398 37 100.0 34 ..................................... CTCTCTCTTCGTTCTTGACAGTTTCTTGACAATT 455327 37 100.0 34 ..................................... TGTTCTTTAACATCTTCTAATGCTATTGCCTTAG 455256 37 100.0 32 ..................................... AATTGGGAGGAATATGGCTTCAGTGCCATAAT 455187 37 100.0 33 ..................................... TCTCCAACGCAGTTACCTGCGTTTACTGTCCCT 455117 37 100.0 33 ..................................... GTCTTTTGCTGCGAATAAAGTAAACCTACTAAA 455047 37 100.0 35 ..................................... ACCAAGCTAGTAGTAGCTGAAACGGTAGTGCTAAT 454975 37 100.0 33 ..................................... ACATCACTTAGCGTAATCGTTGTGCTATCTCGT 454905 37 100.0 34 ..................................... ATCTACAACTACGGCATATTTGTTTGTGTCGTTG 454834 37 75.7 0 ............T.......T.A...A.....TTACG | ========== ====== ====== ====== ===================================== =================================== ================== 15 37 98.4 34 GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGAC # Left flank : CTATTTACACTATTTTAAAAGGCAGCGCAGAAAGTTTGGAAAATCGGGTGAAATTTGTGAAAAATGAAGCTGAATTTGCCGAAGAAACAAAAAAAATCTATTCGGAATCTTGTCATCATTTAGGGAAAAGAATTAAAAAGGAATTTTCAATCGGTCATTGTGAAACACCATATATACCATCTTCTTCACATCAATGTTACGAATTATTGATCGAGGAAGAAAATATTGATATTTCCGCTATTTTGCCAGATTTACAAGGCAAAATTTAAGCCTAAGCAAGCGGTCGTTTTTTTGCAAATTTCTGCAAAATACCGACCGCTATCAAATAACTTTAATCTGACTAGCTGATTTATGCTAAAATAACCACGTTCTTTAATTGTGGAGTTTAATGATTTTGATGAAATTATCACCAAATCAATACCCAGCTATTCAGCCTACTGAATTTTTTGGGAAGCCTATTTTTAACCTTCTGAAAAATAAGGAAAATTTAGGTATCCGCA # Right flank : TTTAAACCTGTTTATTATGCGATTCTAGTCCTATAAATTATTGCCGACAGTTTTTGTCGGTTTTTTCTTTTACAAGCGGTGATTTTTCGCACCCATTTTACAAATTTGTATTCTCCTCTTATTTTCCTCATCTCTCCTAAAATAGCGTTATTGTTAAATATTTAGGAGAGAAAAATGTTCGGTTCTAATCGTGATACACAATCCAGATTCGTAGCACAAAACCGTCCATTTACTCCTTACACTTCAAGTGAAATTGAAGCGTTAATTGCTGGTTATGTAGAAGTGGCTGATGATCGTGCTTATAACGGTCGTTGCTTTGTAAAAGCAGGTAAAAAATGGATCCATAACCTAAATGCTCTTCGCAAAAAATTAAGCGATGCGTATGGACGTTATATTGACGATGAAGAGTTAGAAGCAGGCTATCCTGAGGGTTTTGGCTACGATGTCGCAAACTATTACAGCCGCCATAATCGAATGACATTAGCTGAGAACAAGGAATT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACCGCCCTGCCTGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1708133-1709618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055306.1 Mannheimia pernigra strain BNO311 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1708133 32 100.0 33 ................................ CCTCACTGCAGCAATCAAAAAAGCACGCAATAC 1708198 32 100.0 33 ................................ ATACTGTGGGCAAAACTTTATCCTAGTTAAAGG 1708263 32 100.0 34 ................................ TAACAAAGAGTTGAAGGGCGTAATTGGAATGGAA 1708329 32 100.0 33 ................................ CATATCTTCAGGGCGGGTAAACAGGATTAAGTG 1708394 32 100.0 34 ................................ TTATCACTCACCAACGACAGGAAGAAGCTATTTT 1708460 32 100.0 34 ................................ TAAATATAAATCGCAGTTGCACCATTATCTATTT 1708526 32 100.0 33 ................................ ATTTAATGTACGACTCGCTAACTTGACGTTAGT 1708591 32 100.0 35 ................................ ATTTGCTGACCGCTAAATAAAAGCCAAGAAGCCAC 1708658 32 100.0 33 ................................ TAGCAAGTATTTAATATGGGTTTTCATCTTCGG 1708723 32 100.0 35 ................................ AAGACCGACAGTAAAAATCATAAGTAGCTCCTGTT 1708790 32 100.0 34 ................................ ATCTATCATCCGCCAAGGGATGTTGGATGGTAAA 1708856 32 100.0 33 ................................ AACTATCCTACTGCAAAGTTTGATAAAGCCCAA 1708921 32 100.0 34 ................................ CAATGGTTAATGTTTCTTTTCGCCCATTTATGCG 1708987 32 100.0 34 ................................ GCCTAATAGTCCAGTCTCGGTATCGCCCACAAAC 1709053 32 100.0 36 ................................ CAAGCTATGGTGTAAGTGGGGCAACCACTACGCTTA 1709121 32 100.0 35 ................................ GATTTCCGCTCTAAAATGCGGATCATCGGCATATT 1709188 32 100.0 35 ................................ TCCGTATTGATACTGAGTATTTTAGGTTATCCATT 1709255 32 100.0 36 ................................ AAACTCAATTTCAGGTGGTGGGCTGACGGTTTTACC 1709323 32 100.0 34 ................................ AAGTAATTTGCGTGCAGCAAACTCAAGCGAAGGT 1709389 32 100.0 34 ................................ AATGATTGATTGACTATTCTCATCTAAATCTTTT 1709455 32 100.0 34 ................................ AATATCGTCCAGTACTACCAAATCAGGACGGTAA 1709521 32 100.0 34 ................................ TTAAATTAAATAGCATTGATGTAACTGTTGAAAG 1709587 32 96.9 0 ............T................... | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.9 34 GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Left flank : AGAATTATGATGATGTTAATTACTTACGATATTTCTTTTGACCACCCAGAAGGGCAGAAGCGCCTGAGGCATATTGCCAAATACTGTTTAGATTACGGCATCAGGGTTCAATATTCTGTATTTGAATGCGATGTCACACCCGACCAATGGGTTAAACTCAAACAGAAATTACTCTCCACCTATAATCCGGAAACGGATAGTTTACGTTTCTATCATCTCGGAAGCAAATGGAGAAACAAAGTGGAGCACCACGGAGCAAAAAAAGCGGTGGATATGTTCAAAGATGTTCTAATTTTATAGATTTTCTGTTATCGCTAGCTACTTGTTCTCATCAATATATAGGGAGGCTAGCGATTTTAAAAGTTCTTTAATAATTAATTAGTTAAAAATTTTTATAGCATATTACTGAATGTGCTATACTCAAATCACCCCCTGTAACGACTGCTTTAGCGAAAATCAGGTAATACAACCTGATAGCATAACGTATTTTGATATAGGGG # Right flank : CACTGGTTCGGTAAATCGTGAAAATTCAGGATGTAATGGTCTAACCCATAGCAACAAACCAAAGACTATTTTTGATAAACTCTCTCAAAATGGAGAACAGCAAAATGGTTAAACTTTTTACCCCTGAGTATAAAAAGCAATGTGTTGAAATGGTGTTAGACGGCAAACATAGCGTCAGTCAAGTGTGTAAAATGATGCGAGTCAGCCAATCTGCCCTGAATCGTTAGAAGCAGCAATTTCTCGCCGAGCAGCGGGGAATTCAGCGTTTGCGAGAAGGCATTTCCCACTCACAACTGTCCCGTTGTTTTTCGTTGAACCGTTCTACCAGCCATCGTTGAGAAAAATCGTCGCCTAATCAAACGTTGATGAGCTTGCAGGAAACGTTGCTATCCGCCTTTGAGGCAAGCGGTGAAACCTATGGCTCACGGCGTGTATCGCAGGCGGTGACGGATTTAGGAGTAAAAATCCACCTTCATAGAAGGTGGATTTGCTAAAGCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTACACGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //