Array 1 79624-78601 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHDAF010000007.1 Streptococcus salivarius strain PA11332C3 KS21_NODE_7_length_103370_cov_367.828_ID_620, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     79623	    36	 100.0	    30	....................................	CAAAAGTTGAAATGGACGGCAAAATGGTTC	
     79557	    36	 100.0	    30	....................................	AAGACCTTGACAGCCGCTTGAACTTAGCTG	
     79491	    36	 100.0	    30	....................................	CTGATTCTAGCCATCATGGACTTAACATAA	
     79425	    36	 100.0	    30	....................................	TAGGATATGGTGTCAAAGCTAATGTGGTTC	
     79359	    36	 100.0	    30	....................................	CTTTTCGTAGCAAAGGAACTTCTTTATATT	
     79293	    36	 100.0	    30	....................................	TTACCTCACTTTTTTGATAAAATGGGTACA	
     79227	    36	 100.0	    30	....................................	CATCACTAGAAATGAGTTCTAATGTGTACT	
     79161	    36	 100.0	    30	....................................	TTCATGGGATATTCCAGTAGATTCGAATGG	
     79095	    36	 100.0	    29	....................................	TCGTGAGGAGCAAGAACGCTTAAACGCTG 	
     79030	    36	 100.0	    30	....................................	CAAGATGGCGTGAATCAGTAGTTAGAGCAT	
     78964	    36	 100.0	    30	....................................	GTGCTAAAAAAGATGCGTTTCTTAGGAAAT	
     78898	    36	 100.0	    29	....................................	AGAAAACAAGTTCACAGACAGCACCGTTG 	
     78833	    36	 100.0	    30	....................................	GCATTAATGCTGATACAGAATTGATGATGT	
     78767	    36	 100.0	    30	....................................	TTGATTTTAAAGCTAACGGATCAACACGCT	
     78701	    36	 100.0	    30	....................................	TGAGCAGTTTTGGACGGAAAGCACAACCCC	
     78635	    35	  83.3	     0	T..........T.-...........G........GT	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TTGATAGTTTTATTTCAGAGGAATCTTATGATAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAGTATCCAAATCTAAACTTAATTTTATTTCCAAGTAATCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAAGTGGAGCATTTGTACGATATTGAGTTTATGTATGACAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCACCGAGAGAGGGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCACACTTGTTGATTCTGTAATTTTGAATATCCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG
# Right flank :  TTGATTAATTCAACTAAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGGTTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCACGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATCCCAAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAAACAAATCCGGTATAGGTGACCTTCTTGCCTACGAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//