Array 1 1093881-1094649 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1093881 32 100.0 35 ................................ ACGACTTTTATGCCGTCCATCGTTTTCCGATTCAC 1093948 32 100.0 37 ................................ AATCCTGTCCAGGACAGAACGGGACAAATACAAGGGC 1094017 32 100.0 35 ................................ CAAAATCCAGCCGCCCGCCTGAATCGCTATGTAAA 1094084 32 100.0 36 ................................ ACCTGTGTAATCGCCATTTATGCGGCCTCCTTCGTT 1094152 32 100.0 37 ................................ ATTGCAATGGTCTGGAAGGGCGGTCACAGAAGAAACG 1094221 32 100.0 36 ................................ TTTCCAAATCTGAACGTTATTATTTCGACCACGAAG 1094289 32 100.0 34 ................................ TGTCTGATCGTCTCAAACAATTCCCGCTTATCTA 1094355 32 100.0 34 ................................ AAGGTTTGGACCGTCTTTGTCAATTCAATTGAAA 1094421 32 100.0 35 ................................ ATTGTTCGTTACTCTGGAAGTTTTGATATTAACAG 1094488 32 100.0 34 ................................ TCCTCTCCGAGTTGTTTGATCATATCGAGCAAGG 1094554 32 100.0 34 ................................ CGGATCTTGCCCAGTACACTGCGCCGAAGCAGGG 1094620 30 84.4 0 ........................--.A.GC. | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.7 35 GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Left flank : AAGAAAAAAGATGCATTTTCGCAGGAATTTACCCCCTTAGGAGGATATCCTTGCTAAATTCCTGCATATTTGCAGGCTTTTTTTCTAAAGGGGGACAGGAAGGAGATTACTACGGTAAAATAGAAGTTATCATTAGCAATAAGTGGCAGGTTACCTCAAAAAGAAACTGGGGTTGCTCAAAAGTAGGTGGATGTTACCTAAGTAATTCGATGTTTTGCGCAAAGTAACTGAGGTACGGCCAAAGTGTGAAAAGTGGAATGTAACTCTGGCGATCGGCCAAACCAAGTGTGAAATTGTGGAAATGTGGTGCTTCATTCCGTTAGAAAAACACTGGTGCGAACCCCAAGCTCACATGAAATCCCCGGGGGATTCGCACCGACGTAGCGGCGCGGCTTCCGGGCATTTTCGATACATTTTTTCACAAATAGTTTCGTTGAAAATGGACATTCGCACTTTAGGGCCTCTCAGCCCTTGCTCCATAAGGGCTGTTTTGGGGCGGA # Right flank : GTCAAACCCAGCACACCTGTCCATAATGGTTTGAATCAGTCACAATAAATCCATCACACATACGAAAGGATGGATTGTGAATGGAGATGAATTTACAGGCGTTATGGGCGGAACGAATTCAGGCTTATCGGGCCAGTGGGCAAACGATGAAAGCTTGGTGCGCGGAGCAGAATCTGACCGTTCATCAATTAAAATACTGGCTCTACAAAGCCCAAAGACAAGATCAGGCCGCTTCCGCCACTACCTTCCGTCCGGTTACGGTTACCCATCAGGCTGCAGCAACCGAATCGCTTCAAATCCAAGTCGGGGTCGCTCGGATCGATGTTCGTTCCGGTTTTGAACCGGGGCTGCTTCGCGACGTGGTTGCGGCTCTTGCCCCGTTATGCTGAGTTTCACTTCAGCATCACCGGTATATCTGGCTTGTGGCGCAACCGACATGCGTAAATCCATTGACGGACTTGCGGCGATCGTGCAGGAGCAATTCGCGCTTAACCCGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 1097133-1098233 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1097133 32 100.0 36 ................................ TTCCCACCAAAGCGAAGGAGAAGAACCGCGATTTCC 1097201 32 100.0 33 ................................ ACTATCATTTTCGATTGTAAACTTAGCGTTGGT 1097266 32 100.0 34 ................................ CGTGGTACTCAAAGACAAGCGGCATACCAATTAT 1097332 32 100.0 36 ................................ TCAGAGTAGAACCTGTTATTAAAGAAGCTGATATAT 1097400 32 100.0 35 ................................ ATACTGGACTTCAGAAGTGATGGGACAGGGGAAGA 1097467 32 100.0 36 ................................ AACGATGTTTTCAGCGATGGATTGGATTGTGTCGTC 1097535 32 100.0 36 ................................ TGTGTCAGCTAGGGATTTGACTAGTGGTAACACAAA 1097603 32 100.0 35 ................................ TCAATGATGGGAGCATATCATTATTCCTCGGCGGT 1097670 32 100.0 35 ................................ CCGCAGGGATGTATAGCCCGTTTCCTCGGATCAAC 1097737 32 100.0 35 ................................ AAATGTTATATTTTTAAGCTCCATGCTCAAACCTC 1097804 32 100.0 35 ................................ CTCATACGGAAAATAAAAGCCGACGAATTGCGCAG 1097871 32 100.0 33 ................................ ATCTAACAGAGTATACATAACAGTAGCTGGAAA 1097936 32 100.0 33 ................................ GATAAGGATTGGTACAAAGAGAAGGCAAAGAAC 1098001 32 100.0 35 ................................ ATCGATGCGGCGAGCGCGGAAGATGTAAACGAGCT 1098068 32 100.0 34 ................................ ATAATGTCTCTACGGAGCGGAGCTGGATTGGATG 1098134 32 100.0 36 ................................ ATGTAATGTAAGTATTTCAGAGTGTGAGTATATGGT 1098202 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 35 GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Left flank : GCTTGGCTACGTCAGCAGAAACCCCGGACGATGCCGAAGAGCTTGCTGGGTCAGGCGATTGCCTACAGTCTGAACCAGTGGGACAAACTGACGGCTTTCCTGAAAGATGGTCGGCTGGAGATTGACAATAACCGCGGGGAGCGTTCGATCAAGCCGTTTGTGATCGGACGAAAAAACTGGCTGTTTGCCTATACACCGAGGGGAGCTGCAGCTAGCGCAGCAATCTACAGCGTAATCGAGACGGCCAAGGAAAATGGGCTGCATCCGTTCCGTTATCTCACGTACCTGTTTGAACAATTGCCGCAACAGGTTAATCTGCAAGAGGCGCAGGTATTAGAGCCCTTCATGCCGTGGTCATCGACATTACCGGACTTCTGTCGTCTAAACTAATCTCATTCATCATACACGGGCCCCAGTCTGTCCGCTAGGTGGGGTCTATTTGACGTTCACGGAGTGTGGATTGAAAGTCGTAATCGTCCAGAGCCTTCGCCAAAGAAGCA # Right flank : GCCTGCATACACCTCACTTTCACCCGCTCATACAGAAGTCCCAGTAAACCCATAATCTACAGAAATGTCAGTTGTGCATCGATAATCGCTTGTTTTAGCGCAGAACAACGCAAATTCAAAAGCAAATATTAAAGAAAAAACTCATGTCTATAGCAGATGTGAGTTTTTTAGCTTTTTTTAAAGGACGATAAAGGAAATTTAGGTAATCATGGAGAATTATATGAATATGATACTATTTTCCTACTTAACTAGTTCATAAGGGAGGGGTTAGTTTGCCGGAGGATTTTACAATAGGAGATCTACAATTAGAGCAGTTGCAGGATATGGTTACCAAAGTCTCTATGGACCTTAGGAAAGCAAAAAACAGGAAATTTGAAGGTTCAAGTGTACAAGATCAGGGATTCTATGAAATACGCGTAGTTACTCCTATGTTTGGCGGGAGCGCTGAAGCAGGGAAAATAAATGAAAAGTATCCTATACGCAGCTCTTCTATTCGTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 1106124-1106892 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1106124 32 100.0 35 ................................ AAAAAGTACAGAGCAACAAAAGAAAATGTAATCTT 1106191 32 100.0 35 ................................ ATCCGGTGCTAAGATTTTTTCTAACTTTCCTTTGC 1106258 32 100.0 36 ................................ GTACGTGTCGCGCCGGAAGCAACCGGGAAGTCGATG 1106326 32 100.0 35 ................................ CCTTTGCGGTCTTGAAGTCCTGTGTACCACATGAT 1106393 32 100.0 36 ................................ ATAAAACGAGTTTTCACGCGAAAAAAGGGGAGACGC 1106461 32 96.9 35 .............C.................. ATGTCGTACACCTCCTTTCCGGCTTACGAATAAGA 1106528 32 96.9 36 .............C.................. CGTACAGCATAATACAACAGCAGAGCTATGCCACGT 1106596 32 96.9 33 .............C.................. GGAAGTGCAGCCGATCTACGGAGGAAACTAGAC 1106661 32 96.9 34 .............C.................. TTCGGATTCTGTCAGGCTCTAGCTCCGGACTTCT 1106727 32 93.8 36 ..........A..C.................. GACGGGGAAGCAAGCGCAAGTAGCATCGCGCGTAAC 1106795 32 93.8 34 ..........A..C.................. TTGTGCATGCTTAAATCCGCTCGAAAATGTAACC 1106861 32 68.8 0 .A........A..T.....C..C.G..ACC.C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 95.3 35 GTCACTCCTTGCAAAGGAGTGTGGATTGAAAG # Left flank : ATAATCATTTAAAGACAGTGATGGCAGAGGGATGTCTTAGTGATTGGTATGAAAAACTAAATCATGCGGATTCCAAGTATGGAGAAAATATTAAAAAGGCAGACAGTATTTCAAATATCACATTGGACAAATATAAAATAAAAAGCTCAGATGAAAGCAAAGAAGTTTCACTCATGTCATTAGTGTTTCAATTGAATCAATTGCTAATGCTAATTAATAACCCTATACTATTTCCACATTTAGCTTACGTTGAGATGATAAATGGAGTTTTAAATCCTAAAACGAGTAAAGATTTGGAGCATTAGAATCGATTTATAACGCCATTAGCAGTTGGTGCGAACCCCAAGCTCACATGAAATCCCTGGGGGATTCGCACCAGCGTAGTGGCGCGGGTTCTCGGCATTTTCAATACATTTTTTAACAAATAAATATGCTGAAAATGGACATTCGCACTTTAGGGCCTCTCAGCCCTTGTCCCATAAGGGCTGTTTTGTGGCGGA # Right flank : CCCTCTAGTAATCTAACGAAACACCATACCGCTATTTGCTCCCAAACAGGGCGATTCGAAATCTAACGAAACACCTGCTGCTAGAATAAAAAGTGGACACCAGTTAACAGACTGGAGATAATGAGACCAACGGAGGTGTCCACATGGGAGAACAGAGACAACGTTATAACGAAGAGTTCAAGAAACAAACGGTAAGGTTCATTCAAGAACAAACCAAAACGGTAGCCGATCTGGCGGAGGAATTGAATATTCCTCGAAGTACCTTACACCAATGGATGAGCCAGTATCGGGAATTAAAGAACGAACCGGCAGCCCGTGTAGATCGGGTACGAGAGTTGGAAGCCCAATTAAATGAAATGAGCCGTCAACTCCAGGAAAAAGAGCAAAAGATTGCAGATGTCGAAGAAGAACTAGCCATCGTAAAAAAAGCAGTGCACATCTTCAGCAAACCAAAGAACTAAGATTTCAATTTATTGAAGAACATCGCTCCGAGTTCTCTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGCAAAGGAGTGTGGATTGAAAG # Alternate repeat : GTCACTCCTTGCACAGGAGTGTGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 2114012-2110703 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2114011 33 97.0 33 ................................A CATCACCGGCTGCAGAGGGAGGGAAAAGAACCA 2113945 33 100.0 33 ................................. GTGATCCAAACGGTGATAGCAATAAAGCGCGTT 2113879 33 100.0 33 ................................. CCTTTTCAATTGGTCGTGACAAAATGCCTGCTA 2113813 33 97.0 34 ................................C TCTACCCTGTACATAATTATTCGTTTGCCTCCGC 2113746 33 97.0 35 ................................C CCAAAAATGGCGCCCAGACCACGACGAGAAATCAT 2113678 33 97.0 33 ................................G ATACACGCTAACGCAAAGATGACAGCACCTTAC 2113612 33 97.0 38 ................................C CGTTTTTAGAAATAACGAGATCAGCCCCAAAGTCTCCC 2113541 33 97.0 32 ................................A CTTTCCATGAAACGGTCATGATCCTCATAATA 2113476 33 97.0 35 ................................C GAAAAGGTCTTCGAAGGTGTAATCCGGGCAGTCAA 2113408 33 97.0 33 ................................G TTTTTGGTCGTCCGTTTTCGTAATCCCAATCCG 2113342 33 100.0 33 ................................. AACAAGGAAACGGGAGAGACAAACATATTTGAT 2113276 33 100.0 34 ................................. GTGAAAGTGGATGCTGCATTGTATTTTTGGAACT 2113209 33 100.0 34 ................................. CAGCAATATCCATTAGCGTCTCTGCTTGCCAGTC 2113142 33 100.0 33 ................................. CCGTCCTTATTTACGGCATATGTCAGGTCCTTT 2113076 33 97.0 34 ................................A TGTTGTGAATGCATACTGTTTTGTTCACAGACTG 2113009 33 97.0 34 ................................A AGTTGCTGTTGGTTTAGCATCACCTTCATGCGCC 2112942 33 97.0 37 ................................C TCTAATGCATAAAATCGCTTAGAGAGCCATTTCAGGC 2112872 33 100.0 34 ................................. TGAAATGAACCGGTCTCTCCAGAATGATCATTTC 2112805 33 97.0 32 ................................A TTTTGTAGCAGTCTCTTTCGTTATCCGTTAGC 2112740 33 97.0 33 ................................A TACTAGAGCTTCTAGCGATCCATCCGGCGATCC 2112674 33 100.0 34 ................................. ACCTCCTCAACTGGTTCGTCATAAAACCAACCTC 2112607 33 97.0 33 ................................C TTTTTTCGATCTCCTTGATCGTCATCATGACCA 2112541 33 97.0 36 ................................C CTTTACGTAGACAAGGCTGGCATAGATGGTGATCTC 2112472 33 97.0 34 ................................G CAATATGTCCAAAGAAATCCCGGTCGCTGCTACT 2112405 33 100.0 33 ................................. TTAATGAACAACTTGAAAAGGGCGCACGTCGTA 2112339 33 100.0 35 ................................. TTGGAGCTGCTATGCAATCAGTCAGCACAGCGACA 2112271 33 100.0 35 ................................. GGATGACTTTGGCGATGGATACCAGGCAGCTGGCC 2112203 33 97.0 35 ................................G CCGCGCTGACGGGTTTATCCGTGAGCTGACTGACA 2112135 33 100.0 33 ................................. GATAAGGATGTCGATTCTGGCGAATACCTATTC 2112069 33 100.0 33 ................................. GTACCCTTTGCTCAAGTATTCCTGAGCTTTGAG 2112003 33 100.0 33 ................................. TTAAACCTATGTTTGGCTCAATCGCAGCTGGCA 2111937 33 97.0 34 ................................A TGTAGTCTAGACAGTGTAACGTCTTGATCGAATC 2111870 33 97.0 33 ................................A GGCAGCGATACTTTCCCGCAACTAGCGGCTAAG 2111804 33 97.0 33 ................................A TGGATGACAATATACCTTCGTCTTAATTTCCGA 2111738 33 100.0 37 ................................. GCATGAACACCGTTTAAAACGTCATCGCCCTGTTCAT 2111668 33 97.0 32 ................................A CGCAAGGATGCCGCGTGGTACTCGGAAAATAC 2111603 33 100.0 34 ................................. TCTAGGTTAAATGTTTTTTGGCAGCCAGCATTAC 2111536 33 100.0 33 ................................. TTTTTTAGCCATACACACCGTTTTCCTCCCCTG 2111470 33 97.0 35 ................................C TTTATCATTGCGGGGAATAAAATACGATGGATCAG 2111402 33 97.0 34 ................................A TGTATCCACCAACCGTCTTGCCGATAAGTTATTT 2111335 33 100.0 32 ................................. GAACCGTTTAACCTTTTTAGTATACTGCGCTC 2111270 33 97.0 33 ................................C ATTTTCACCGACGCACTGCCCAGACGATTACGG 2111204 33 97.0 37 ................................C AAAAGCAATGACTCCGTAAAACATAATAAAAAAGATC 2111134 33 100.0 35 ................................. CTTTGCGAGGGTCATCGTGGTCCCGACGTTGTACC 2111066 33 97.0 32 ................................C TCGATCAATACGATGTCTTCGCGGGCAACACG 2111001 33 100.0 34 ................................. GCTCGATAATTTCGTTGTCATAATACGGAATGTC 2110934 33 100.0 32 ................................. AGATTCAGATCAGAAACCGAAGTATGTAAGTC 2110869 33 97.0 34 ................................A TAGGGGAGACGGATGGAAATGAATCGGGTATGTA 2110802 33 97.0 34 ................................G TTCCAGCCCTGGCTATCAGCTTTATAGCTGGAGC 2110735 33 90.9 0 .............C.................TG | ========== ====== ====== ====== ================================= ====================================== ================== 50 33 98.1 34 GTCGCATCCTACGTGGATGCGTGGATTGAAAGT # Left flank : GCAACGTTTGAACCAATCATTTGGATCAACCATCGTTCCCCGAACCTCTGACGAAACTACAGATCGCTATTTTCCCAAAAACAGCGGTAAAAAAATTTTAACGAAACACCATATCGTTATTCGCTGGAAATCTCGACTTTAGTCCCCAAACTAGCTCCAATAGCGATCCCCAGTTTCATTAAAATTAGAAACAGCCCTTTTGAACGCGAATAGCGACATGACGTTTCGTTAGAGATGGCTGATAAAATTCATAGGCATCTGACAGCAGATTTTTCGGATTTCAAGAGGAAATTTTGCTAAAATAAGAGCAAAGGACGTAATATAGACTGTAACGTTGATTGGTGCGAACCCCAAGCGAACATGAAATCCCCGGGGGATTCGCACCAAGAATCTCTTGGCTTTTATCCATAAATGGAAAATAAAGAATATTTTCAAACTATCAATATTTTTATTTCAGTAAGAAAGTACCGATTTCTGGGCTTATCCGCCCTAATTTCGGA # Right flank : GCAAACCAGTTTCGCTCTCTGGACGATTTAATGTCGCATCCTACGTGGATTAAAGCCATCCTTTGCTAGACATCTATAAATGTTATATACTGGAATTTGGTGAAGCACACTTCTACTATTGTGAAGCGATAATAGGGGTGTGCTTTTTTGTATACATAAGGGATTGGAGTTACTGTTTATATGAGAAAATAGTAGAACATACTTATTCTGGAGGGGGATAGCAATGATTTTTGAAATGACCACTCAAGTTCGGGTATCAAACATTGAAGAGGGGCAGAAATGGTATGAGGCACTTTTAAATAGAAAGCCTGATGTTATACCACATGAAGGCTTTGCGGAGTGGGAACTGGTTCCCGGATGTTGGTTACAGATTGCAGAAGGAATGCCTACTGAAGGCAATGGACCATTACGTTTTGGAACAACGAATATTGAAGCTGAAAAAGTTAGACTTGTTGAAGTGTTAGAGATCGATGATTTTGAAATTTACTCAAGACCAGAGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2553778-2553479 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2553777 32 100.0 35 ................................ CAGACGTTCCTCCTCAACTGCAGCTTGCCGCTCAA 2553710 32 100.0 34 ................................ TCCAGGGTCAAGATAAACAATAGCCCCTCGCCCC 2553644 32 96.9 36 .......T........................ ATTTGCATCTCCACGGACTCCATGGCGTCGGCTATC 2553576 32 93.8 35 .....G.T........................ TATTGTCGATTGCTGTCGATAATTGCGTATTAAGA 2553509 31 87.5 0 ...........C.C..........-.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 95.6 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Left flank : TTCCATTGATCCGGATAGCCGATCTTGATCGTCATTTTATCCAGCTTTTTAATGGCTTTGGCTTTGGTTGCCTCGGACATCCAGTCCAGGTTCTTAATCCGTTCCTTATAAACCTCAATGAATTCTTTAACCATTTGCTCGACGTCTGCTTTGGCTTCCTTCGTGAAGTAGCGCTCAGCGAACTCCTGGCTGAGATAGTCGCTCATGATGGCTTTCGTCGTCATCAGTGCGATCTCTTCATTTGTCTTTTCACCTTCAACTCCGAACATTTCCGCTTGGAATTCCTGTCCGGCTTTACTGAAATCTTCAGAGAGCAAGCCGCCCACAGACATTAACAATAGGGCTTTCGTATAAGTTTTGAGGGTATCGATATTTTCATCAGTCAGCAGTTCAGCTGATTTTTTTACTAACCCGACATCCGTCACAATCACTTTATCCGCTTTGTCGACATGAAGCTCTTTCATCATTTTTGCCATATCGAAGGACTNNNNNNNNNNGCA # Right flank : GATAAATGTGCAAATGTCGGAAGTTTCTATCCTAGTCTAGTTGTAGTTGGTACATTTATTTTGCAGGATTACTGGGATTCTCGTCTTGCAAGTGTATTTTGTACACTTAAAATAGCCGATTCTTGATTTAGTTAGGAAAATTGCTATTCTAAGTGTACTTTTTGCAATTAAGGTGAGGCTGGAGCGGATATGTGATATTTTAGCTGTGCTTTATGCAGTTAGAGGTCACGTTAGCGGGGAAGAGCCTCGCTTGGTCAGGCCGCCCAATCGGCAAGTTACTTTATTGACATCACGCAACATTATTGCGATAGCGCTCCAGTATCATCCAATTGGTACCGTGGTGCAGATCATAAGTGCAAATATACAACTATATTGGTGCATTATGCTCTCCCGTCGCATCCTACGCGGATGCGTGGTTGAAGGGATAAATGTGCAAATGTCGGAAGTTTCTATCCTAGTCTAGTTGTAGTTGGTACATTTATTTTGCAGGATTACTGGGA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2561565-2556162 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2561564 32 100.0 34 ................................ ATTAGTAACAGGACTTGCCAATGCAGCTAAGGCT 2561498 32 100.0 35 ................................ TTAACAACAACGCTCCAACCCTTCTGGCTGATGAT 2561431 32 100.0 37 ................................ AATCCAGTTAAGGTAACTGGTTCAGAAACCAGTGTCC 2561362 32 100.0 34 ................................ CGATATATCGCTTTCCCGGACGATCCGAAAAGGT 2561296 32 100.0 36 ................................ CAAACCGTCTCAGGATCGTCGAGATCGGGCAGAGCT 2561228 32 100.0 34 ................................ CGTGGAACATTAGATTTTTTAGCCCATTTTGTTA 2561162 32 100.0 35 ................................ AGATGGATACGCTGGCCTATGTTTTGATGTTTTGC 2561095 32 100.0 33 ................................ CCTCCATCTCTATTGAATGCCCTCTCTTGAGCA 2561030 32 100.0 36 ................................ GTATACGAAAAAAACAAATTGAGGTGATACAGGACA 2560962 32 100.0 31 ................................ GCAATAATCGCCGCGAGACATATCGATTCCG 2560899 32 100.0 37 ................................ CAGAAGGCGCACCATCCGAACTAAGGCGTGGTTTCTT 2560830 32 100.0 37 ................................ TCTGTAACGGTCCCGATCCGTCTTAGAAACATTACTC 2560761 32 100.0 35 ................................ CCATATCCAACCCTATTAAATGTTTTCCGAACCGC 2560694 32 100.0 36 ................................ CTGGAGCAGCTGCGCGATCCGTGCGCGGTTTGGGTG 2560626 32 100.0 35 ................................ CTTGATAGCATCCTCACCTGTATTAATTACTAAAT 2560559 32 100.0 36 ................................ CTATGCCTAGGGGTCAAAAGCAGACCCAGGAATTTT 2560491 32 100.0 36 ................................ GCTATAAAAGCTGTGACTAGTAAACAGAATGATAGG 2560423 32 100.0 35 ................................ CGTTGCTCAAGCAAAAGATACAAACTAACAATGTA 2560356 32 100.0 35 ................................ ACTTTGAGGAGTTCGGCACATATAAACAGCCAGCT 2560289 32 100.0 35 ................................ GATTTGATCACAGACATTGTTTATCCGATTTGCGA 2560222 32 100.0 35 ................................ GACGATCTGATTCTTGACACTCTGTCCATAGGCCC 2560155 32 100.0 36 ................................ TTTTGTCATATCAGGCTTTGTTTGTACGCCTTGCTT 2560087 32 100.0 35 ................................ TCAAACGCAAAAGCGGATTCGATTTTAAACGAGGC 2560020 32 100.0 36 ................................ ATCTACGCTATTGGTGAGGACCTGAACGGCAGATTG 2559952 32 100.0 34 ................................ ATGCTGGCAATTTTGCTTAAATCGTTCGTATCGC 2559886 32 100.0 34 ................................ TTCCGGTTGCTGGGTCTGTCCAGGTAAGATTGTT 2559820 32 100.0 37 ................................ ATGTACAATGCAACGCCCGCAGCGATCAAAGCAGCAA 2559751 32 100.0 33 ................................ ATATTGTTTTTTCAAAGCAGTAACAAGTGCATC 2559686 32 100.0 35 ................................ AATGTTATCGGACATTTCCTATCCTCACCCCCTGT 2559619 32 100.0 33 ................................ AAATCCGCAACCGAACCATTCGAAACCTCAACA 2559554 32 100.0 35 ................................ ATCCGGTTCCATGCCGCCGCCACGAAGCATAACCT 2559487 32 100.0 35 ................................ AATCTACAACGGCATCCGGCGGAGCATCGACTCCG 2559420 32 100.0 35 ................................ TATAAAGAAAGACGAGTCAAAGGAATAAAACCCAC 2559353 32 100.0 34 ................................ CCTTACTCATTTGAGTAAACTGCGCTTCCGTTGC 2559287 32 100.0 36 ................................ CATTTACGCTCGAGGTCAAGGAAATACTGTCGGGCC 2559219 32 100.0 33 ................................ AGCTACAGGCTTTATGTGATCGACATGTAACAC 2559154 32 100.0 38 ................................ TAAGCACCTCGCCAGTGTCTTCGGTGCTTATAGCCACC 2559084 32 100.0 33 ................................ TAATAGGATTTTGGGTTCTCTTGTCGAATTAGT 2559019 32 100.0 38 ................................ TAAGCACCTCGCCAGTGTCTTCGGTGCTTATAGCCACC 2558949 32 100.0 33 ................................ TAATAGGATTTTGGGTTCTCTTGTCGAATTAGT 2558884 32 100.0 37 ................................ TTTTTTTAGCCATACACACCGTTTTCCTCCCCTGTTA 2558815 32 100.0 34 ................................ GCAGTAGCAACAGCGGATTGGGGGACGATCAGCC 2558749 32 96.9 34 ............................C... GCAGTAGCAACAGCGGCTTGGGGGACGATCAGCC 2558683 32 96.9 34 ............................C... GCAGTAGCAACAGCGGCTTGGGGGACGATCAGCC 2558617 32 96.9 34 ............................C... GCAGTAGCAACAGCGGCTTGGGGGACGATCAGCC 2558551 32 100.0 35 ................................ GAATCCCCAATGTTTGAAAATGGGTATTACCATGT 2558484 32 100.0 35 ................................ AGAAGAATATCTAAAAAATACCCCGCTTAAAAATA 2558417 32 100.0 33 ................................ GACGAGGTATACATCCCAAATTAACACCTCCGC 2558352 32 100.0 36 ................................ TAGCGAGCATATTTAGGCAAGCGATAGAATGGAATG 2558284 32 100.0 36 ................................ GACCTTAATACAGGCAATAACGAACTAATCTATACC 2558216 32 100.0 36 ................................ TTTCCGGATACAGTTGCACTTTCTAGAAAATCGATT 2558148 32 100.0 36 ................................ AGTGTACAGTCATCATAATTTACGTCACTCCAACAC 2558080 32 100.0 35 ................................ CTTTAGAGTGCGCCTTTGTAGCAAGAAATTCGATT 2558013 32 100.0 36 ................................ ATCAGAAAACTAAGATTTATAGTCTAGCGACATCCT 2557945 32 100.0 36 ................................ GAACCCATCTGAAAGTGATTGGTATTCTGCAATGTG 2557877 32 100.0 34 ................................ AACGAGATCAGATAAAAAGTCATATCCAGTATTA 2557811 32 100.0 36 ................................ CTTCAGGCGTATTAAAACAAGTGGTGAAAAATGAAA 2557743 32 100.0 36 ................................ CGTCAGATCATATAAACGCATGGTCTTTACAACCTC 2557675 32 100.0 35 ................................ CAATAAATGATGAAGATAAGGAAAAAATTAAACGC 2557608 32 100.0 37 ................................ TGACGAAGCCGAGGTGCACCGAAACCAAAACCATCGA 2557539 32 100.0 34 ................................ TGATAGCTTTCTGTCCGTACATCCCTGTAAGCTT 2557473 32 100.0 37 ................................ AAGTACTGTCTTACGTTGTGACAAACGTAGTGATTCA 2557404 32 100.0 36 ................................ ACGCAGAAATCGGCAAAGCGATTGCGTTAAGAGAAG 2557336 32 100.0 33 ................................ TTTAGCCGTAATACAAGCATCCATGACGAAATT 2557271 32 100.0 36 ................................ ATCGCACATCACGAATTTGTTAATGTTCTTTAAACC 2557203 32 100.0 35 ................................ TCTGTGCAGCGGCGCCGAATGCCGACTAAGCCAGG 2557136 32 100.0 36 ................................ CCATCCACCTGCGTCCGCAATATCGAACGTATCGAA 2557068 32 100.0 36 ................................ TTGAAGTTGAAAATAAGACATCCTCTTAAGATCGTC 2557000 32 100.0 37 ................................ ATTTGGAGCAAATGCAACTTCACGCGGTACAACTCTC 2556931 32 100.0 35 ................................ ATAAAATACATGCCCTCGAATAGCTCGTTTCCCTC 2556864 32 100.0 37 ................................ CGCGGCAGAGACGTCGTCCTTTGTTCGCGTCGCGCCG 2556795 32 100.0 35 ................................ CGTTGCGCGCCGAACAGTCTCTTTCCACGTTTCCC 2556728 32 100.0 36 ................................ CTGACCTAAAGGAAGTGGGAATATGTTTGGAGGACC 2556660 32 100.0 34 ................................ CCTAAAGTTTGTTGATGATAATGGTAAATTAGCA 2556594 32 100.0 36 ................................ GTTGAAACGCCGCTATACTTCGCAAGTCCTTCCGCA 2556526 32 100.0 35 ................................ CAGACGTTCCTCCTCAACTGCAGCTTGCCGCTCAA 2556459 32 100.0 34 ................................ TCCAGGGTCAAGATAAACAATAGCCCCTCGCCCC 2556393 32 96.9 34 .......T........................ CTCGCTCGACTTGTTTAAGGACGCCTTCACCAGT 2556327 32 96.9 36 .......T........................ ATTTGCATCTCCACGGACTCCATGGCGTCGGCTATC 2556259 32 93.8 35 .....G.T........................ TATTGTCGATTGCTGTCGATAATTGCGTATTAAGA 2556192 31 87.5 0 ...........C.C..........-.....G. | ========== ====== ====== ====== ================================ ====================================== ================== 81 32 99.6 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Left flank : TTTTTCTGAAGGACGGGTATATTGTTGTTAATTTTAATATTGAGACAATCCGTGAAGGGCAGATGGGCAAGCCACACTTGCAGTATATCCATGCCCCGCTGATGAACCAATGGCAGCAGATGGAGGGTTTCCAACGCAAGGTTACAGACCCGTATGGTCGTGATTTTACATTGCTGGACGGAGATGTGGTATTCTACCATGCGGATCAATCGAGCCGGGATGATTTTCAATCGATGGTGACACATTGACATATGATTATAGTAGAATAAAGGAAAATTGACCTGGAGAGTTGAATATAATATTATTAGTCGAAATTTAATAGTCTACAACAATATAATTTGGTGCGAACCTCAAGTGAACATAAAATCCCTGGGGGATTCGCACCTGAAATATCTTGCGATTTATCCATAATTGGAATTTAATTCAATATTTTCAGGTGATACTTTTTTGATTTTAGTAAGAAAGTACCGATTTTGAGGTCTTCACACCTTAAATTCGGA # Right flank : GATAAATGTGCAAATGTCGGAAGTTTCTATCCTAGTCTAGTTGTAGTTGGTACATTTATTTTGCAGGATTACTGGGATTCTCGTCTTGCAAGTGTATTTTGTACACTTAAAATAGCCGATTCTTGATTTAGTTAGGAAAATTGCTATTCTAAGTGTACTTTTTGCAATTAAGGTGAGGCTGGAGCGGATATGTGATATTTTAGCTGTGCTTTATGCAGTTAGAGGTCACGTCAGCGGGGAAGAGCCTCGCTTGGTCAGGCCGCCCAATCGGCAAGTTACTTTATTGACATCACGCAACATTATTGCGATAGCGCTCCAGTATCATCCAATTGGTACCGTGGTGCAGATCATAAGTGCAAATATACAACTATATTGGTGCATTATGCTCTCCCGTCGCATCCTACGCGGATGCGTGGTTGAAGGGATAAATGTGCAAATGTCGGAAGTTTCTATCCTAGTCTAGTTGTAGTTGGTACATTTATTTTGCAGGATTACTGGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 5352502-5354740 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5352502 32 100.0 34 ................................ AAGAAAACTTAACCGCTTGGAATCGGGTTGAATT 5352568 32 100.0 35 ................................ ACCCGTTCTGTCATTGGTCAACTCAAAACGGTGGA 5352635 32 100.0 36 ................................ TCATTTTAAGGAGGAATCGTGATGAGCGAAGTTAAA 5352703 32 100.0 34 ................................ TTTATCTCCGACCCTATCCCGGACGTACACATCG 5352769 32 100.0 37 ................................ CTAAGCGCCGGGCCGCCATTTCCGCCGCTCCGCCCGC 5352838 32 100.0 35 ................................ CGTTACCTAAGACAGAGAGAGCAGCAGAGAAGTTT 5352905 32 100.0 34 ................................ CACAATTGCTGCGCTCCAGTTGCCTGTGTTGGTG 5352971 32 100.0 34 ................................ ACGTATCGATCCGCAGCCTCAAGTTTGTAACTCT 5353037 32 100.0 37 ................................ TTGGATCCCCATAAGCAAATCCATAGGATTCCGGCCA 5353106 32 100.0 34 ................................ GTTTCTCTGCCTCTGCTACATGGAGGGCTACAAT 5353172 32 100.0 35 ................................ CGAATCGCAAAAAAGCAGTAACTCCTTCCCCAGCA 5353239 32 100.0 35 ................................ TGAATTGCCACAGAAGGTTGAAAAGATAATACCTC 5353306 32 100.0 36 ................................ ATGTCTACTCCTCCCCTGTAAACCAATCAAATCCTT 5353374 32 100.0 35 ................................ ATGAATATGGTCTGCGATATGATGGATTAATGGGC 5353441 32 100.0 35 ................................ TTAAAATCTTGGAATCGATTTGAAGCACGCCCAAG 5353508 32 100.0 35 ................................ CACCTACTCTAGCTTTGTCCAGCAGCTTATCTGCA 5353575 32 100.0 33 ................................ GGGCATGTGTACCTATAGCACAGATATTGACGG 5353640 32 100.0 36 ................................ TATTCCGTCCTGTGCTAACCCGTCCATGCAACGATC 5353708 32 100.0 34 ................................ GTTTGTGTCATCTCCTTGTTGTTAATTCTATTAT 5353774 32 100.0 36 ................................ TCGCTTCGCCCCTTGACGGACCTGTGCCTGGAACAG 5353842 32 100.0 33 ................................ CCGAATCTCGTCCTCATCAATGCGTTTAATCCG 5353907 32 100.0 35 ................................ TTGCTTCGCGATCTTGATTGCCATCCTCTGAATCC 5353974 32 100.0 35 ................................ CATCTGGCTTTTTACAGCCTTCATGGCCATTAGGA 5354041 32 100.0 35 ................................ TACACAAAATATGGACAGTAGTTGCGTGGAATATA 5354108 32 100.0 34 ................................ CCTAGTTGGCTGCTATTCAAAAAGATTAAAGATG 5354174 32 100.0 34 ................................ CGGAAGGGAAAACGTATACGAAAAGGCACGCTGC 5354240 32 100.0 35 ................................ AAAGAGTCCGGCGCTAAAGTAATTGATACCTTTGC 5354307 32 100.0 36 ................................ AGGCATTAGACCATCTGCAAGATTGACCCTGACCTC 5354375 32 100.0 35 ................................ ATTGAAGAAGGATGGGCTCGTCAGGAGCCTGAAAA 5354442 32 100.0 35 ................................ CGTGTGCTGGCGCATTTGGGCCGCCCTGATCTCTG 5354509 32 100.0 33 ................................ GCAGTGGGGTGATTTTCTTAAGCGATGAAACAA 5354574 32 100.0 37 ................................ TCTCCCCATGCACGAATAGTGTAATAGAATCGGTCTT 5354643 32 93.8 34 .........CC..................... GCAAAACGCCATGGCCTGTCTATCGCCAATTGTT 5354709 32 90.6 0 ...........T..........A.T....... | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 99.5 35 GTCGCATCCTTCGTGGATGCGTGGATTGAAAG # Left flank : CCGCCGTTTCTATGGAAGTAGGTGTAGACGATGCTAGTATTGGTCACTTATGATGTAGGTACGACGCATAGTGCTGGGCAGAGAAGACTGCGGCAAGTGTCCAAGGTATGCCAGAATTATGGACAGCGCGTGCAGAACTCCGTGTTTGAATGTGTAGTGGATGCCACAGAATTTGAAGTTCTGAAAATGAAACTGATCGACATCATCGACGAAGAGCAGGACAGCCTACGATTCTACCAGCTTGGCAACAACTATAAGAGCAAGGTAGAGCACGTCGGAATTAAGGAATCCCTCGATCTCGAGGGCCCCTTAATCCTGTAGATGACTCCTGTAAATCCGTGGTGCGAACCCCAAGCGAACATGATTTCCCTAGGGGATTCGCACCACGAAAATCATGGATTATATCCATGTATGTAATAAAATGTAATTATGAGAAACTCTTAAAAGTAGTTTTTTTATGTAAAATGCGGTTTTCGGGCTCTTTTTACCCGAAAATCGGA # Right flank : GCCACCATGCTTTCTAGATCCTCAACGCTTGGCTTGTCGTATCCTACGTGGATTCATGAAAGTAGTTTGAGTTTTGTTAGCGGATCGAGCATGTTTACCCGTAGGTATAGTTCCCAGAGTAGGTACTCAGCTTGAGTGTACGGCTTTGCATGAGAAACTAGTTGTGAAAGAAACAGAAATAAATAACCCGATTTTAGTAATGGAGGAGAAGTGTCTAGAAGAGTTGAATATAATATTGATCAGTTTAAAATAAATGATCTAAGACCGATAAACATTAAGTGCGAACCCCAAGCAAACATAAAATCCCTGGGGGATTCGCACAAAAAAATCTTGATTTTTATCCAAAAATGTGATTAATAAGCAATTATAAAATCTCCAGTATTTTAATTTTAGTAAGAAAGTACCGACTTTTGAATATTTTTGTTCAAAATCGGAGTCACATCCTACACGGATGTGTGGATTGAAAGGTGCGACTTGCTCCGATACTTGTCCAACAATTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 5355175-5355866 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ987724.1 Paenibacillus aceti strain L14 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5355175 32 100.0 35 ................................ GTGCGACTTGCTCCGATACTTGTCCAACAATTTCC 5355242 32 100.0 35 ................................ ATAAGTTGCCCAGTAATTCAATGCGATTACGATTC 5355309 32 100.0 32 ................................ GACATACACAATTGGCAAATCCGTTACGACTG 5355373 32 100.0 34 ................................ TTTATACGATACACGCCATTAATCTTCGTTTTGA 5355439 32 100.0 35 ................................ CCCCCTATCCAAAAGCGGCCGCCAAGATTTATCAA 5355506 32 100.0 34 ................................ TTTAGGAGGTGATGATTTGAATTTGTTGCCATTA 5355572 32 100.0 34 ................................ TTTTCTTCTACCACGGTCTTTCCCTCCTTTTTTC 5355638 32 100.0 35 ................................ TCGCCTTTGCTCATGTCTTACTCACCCCCTTTCCC 5355705 32 100.0 34 ................................ TCTCAGAGAGAAAATAGTAAAAGGAGACACGTGA 5355771 32 100.0 33 ................................ CTCTAAGTCTGGATGTAAGTAAATAAACTTTTC 5355836 31 93.8 0 ....................A.-......... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.4 34 GTCACATCCTACACGGATGTGTGGATTGAAAG # Left flank : GCAAAACGCCATGGCCTGTCTATCGCCAATTGTTGTCGCATCCTTTGTGGATGCGTAGTTTGAAAGCCACCATGCTTTCTAGATCCTCAACGCTTGGCTTGTCGTATCCTACGTGGATTCATGAAAGTAGTTTGAGTTTTGTTAGCGGATCGAGCATGTTTACCCGTAGGTATAGTTCCCAGAGTAGGTACTCAGCTTGAGTGTACGGCTTTGCATGAGAAACTAGTTGTGAAAGAAACAGAAATAAATAACCCGATTTTAGTAATGGAGGAGAAGTGTCTAGAAGAGTTGAATATAATATTGATCAGTTTAAAATAAATGATCTAAGACCGATAAACATTAAGTGCGAACCCCAAGCAAACATAAAATCCCTGGGGGATTCGCACAAAAAAATCTTGATTTTTATCCAAAAATGTGATTAATAAGCAATTATAAAATCTCCAGTATTTTAATTTTAGTAAGAAAGTACCGACTTTTGAATATTTTTGTTCAAAATCGGA # Right flank : GTAACTTGATATTATGGATAAAATTACCCTAATTGCATCTTTTATAAATAAAACAAGACTTCCTCCACAGGTATAGAATGCGGAAGAAGTCTTGTTCAATTTTGATATAGAAGTTTCATCCTTATTGGGTTAAGGGAGCACGGTTGTTCAACGGTTGCCGAGTTGTTCTTCGATTTCTGCTATGATTGTCCGTCCGCCTTGATCATACCAATCCTTCACGAAATCATCGAAGGAATCGACGGGGATTTCACCAAGAACGATTTTGTAGAAGGTTTCGTTTTCGAATTTGAATAAGGTATCCCATTTCTGCTCCATAGTTGGTGTCATGGATGTAAATTGATTGTAGACCTCTCTATCCATTTGCTGCGTGACAATTTCGCCACCATATAGATAGGCGTGGGGAGCGGCCCAATCGCTAACATTCATCTCTGATCGTTGCTCTCTTCTCAGCCATCTGTTGTAATGTCCCATCATTTCGGGGGATAACGAATATGGCGAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTACACGGATGTGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.50,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //