Array 1 3519770-3521680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADJA010000002.1 Budvicia aquatica strain NCTC12282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3519770 29 100.0 31 ............................. CAAAGTTAACGTTTATAGGCTTTGTCTTGTT 3519830 29 100.0 31 ............................. ATATCCTTAGGGCTAATACTCATAATTGAAC 3519890 29 100.0 31 ............................. CACTAATGGTGCAGAAAGGTATTGCTGGTAC 3519950 29 96.6 31 ............................A GTTCAGCGATTCTAAAGAGCCGCGAGCTTAT 3520010 29 96.6 31 ............................C CTCTACGGCGATACGTGAATAACCTGACAAT 3520070 29 96.6 31 ............................A AATAGAAAGGCACGCTGCCAGATAGGAAAAT 3520130 29 93.1 31 .A..........................A TCCTGAATCAGCTTCATGGACTCCTGCATAA 3520190 29 96.6 31 ............................G TGATGCGCTTTTGAATGCTATAAGTGCGGGA 3520250 29 96.6 31 ............................C AAGATTGGAAGTATTCTGCTTGCTCCCAATC 3520310 29 100.0 31 ............................. CTGTCCTGACTTTATTGATGAGCAAACCGAC 3520370 29 96.6 31 ............................C AATGGCAGATTGCCGCATAGGAATTCAGTAT 3520430 29 96.6 31 ............................A GCTAATCGGTAAGGCTCTTTACGGTAGGCTA 3520490 29 100.0 31 ............................. TAGCCCTACCCTAGTCTAACCTTTTGCTGAG 3520550 29 96.6 31 ............................A AGGTGGCCGATAAGGCCACACGCTTTAAAAT 3520610 29 96.6 31 ............................G TAGGTAAAATCTGTTATTCGTCGGTTATTGC 3520670 29 100.0 31 ............................. AATTGAAAGGGACCGAAAAGGCGCTTTTGGA 3520730 29 100.0 32 ............................. GACTCATATATCCTCATATTGCAAACAAAAAG 3520791 23 55.2 0 ................TAATACC------ - Deletion [3520809] 3520814 29 100.0 31 ............................. TATGATAGATACTATTCTTTGTACCTCTCTA 3520874 29 100.0 31 ............................. GAGTTAACCAACGTGTTAACAGTAGCCGAAA 3520934 29 100.0 31 ............................. ACATGATATAGCTCTACCTCTTAGCTCTACC 3520994 29 93.1 30 ...........................TA ACAACTCGTTAACTCGTAACTCACTACTGG 3521053 29 96.6 32 ............................C AATAATAGATTTACCGTCTGGGATTTCGTCGT 3521114 29 100.0 31 ............................. ACGGGAAGCGGATTATCGTTGAATCTAATCA 3521174 29 96.6 31 T............................ GAAGGCTACGGGCGCTACGGTCAGGGGGGGT 3521234 29 96.6 30 ............................C ATTAACGGCGGTGAAATATTACGGTTAAAG 3521293 29 96.6 31 ............................A GTCACAGACGCAGCACTCCGAGAAACTCAAA 3521353 29 96.6 31 ............................A CACTTCACCAAGCCGTGATAATTTTTTATTC 3521413 29 96.6 31 ............................A TAAGGTTTTGCGCCTGACTCATGGCATTTGC 3521473 29 96.6 31 ............................C CCATCGTTCAGCTTAAATGTTTTTCCAGACC 3521533 29 96.6 30 ............................A GACTCACAGGAGAATATTATGCGTTTATCA 3521592 29 89.7 31 ......T......C.......C....... ATTTAACCTATAAGCCTAAGGTAATCTCTTT 3521652 29 93.1 0 ..A.........................G | ========== ====== ====== ====== ============================= ================================ ================== 33 29 96.0 30 CTGAACCGCCGCATAGGCGGCTTAGAAAT # Left flank : ATATGCGGTGTTCGTTCGCAAACATGCGAAATCGCAACGTGATATTGAACGAAAACGTCAGCACCTATTGAAGAAGGCCGGTGGTGAATGGAATGAAATAGCGCAGGAAAGTATGGATCGCTTTATGGATAAATTGTACTGCAAGTTACCTTTTATCTATCTGACCAGCCATAGCTCGATACCGGCTAAAGGCGAGGAGAAAAACCATTTCAGCCTTTTTATCAGTAAGGAAAACGGCATGCTGATGAAAGGAAAATTGACAAAATATGGTTTAAGCGACCCAACACACAAAACCAGCGTACCTATTTTTTAACGATTGAAGTTCTAAGTTCTTTAATAAATAGGCTAGAAGTGCCATAACCCTTTTTTTAGCGATAAATTAATCATTAGATAAAACAGACGGTTAAGAAAGTCGCTGAAAAAAAGGGTATTTGACTTACCAAAATAGAACATCCCAGAGGCAGCAATGCGTCTGGGGTGATTTTTTATTGAAAAGTCTA # Right flank : GTATATAGTATAGGCCGTCCGTTCGGCTCTAACTAAACGCCGCACAGGCAGCCCAACAACAAAAGCGCGCCAATGATAAAACTCACGGCGCGCTTTTTGTTCTCTGATAATGCCTCTATTCGACCAGACTATTAACGCCCGAACTTTTGCAGGGCGGTTTCCAGCGCTTTGCGCAGCAAATCACGATCGTGGCGATAGGGGACGTCGTCGGCTTCCAGCGGTTGCTGAACGATCACCTTATTGGTGATACCGGCAATATTGGTCTGAGGACCAACGATAACACCGTCTATTTTGCGGCCGTTAATCGCCTCTTCAACAATGGTCATTTTTTGCGTCAGGGTTAATGATGCGGCTGCCGGGCTGAGCTCTTTTGCTAAATTGCCGATATAGATAATTCGTGCCTTGCTGCGGCCAAGGGCCTGAGCCAGGTCGCCTAACAGGAGCGGCGGCATCAGGCTGGTCATAAAGCTTCCGGGGCCAATAAGAATTAATTCAGCTTC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3526105-3528055 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADJA010000002.1 Budvicia aquatica strain NCTC12282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3526105 29 96.6 31 ...........T................. CATTAGAGGGATAGAGGGATAGACCCCTTCA 3526165 29 96.6 31 ...........T................. AAGCATGAAGGATCAGAACCGGTCAGAGATT 3526225 29 93.1 31 ...........T................T TAACTCAGCTTTGCGTTGCTCAAATCCCCAA 3526285 29 93.1 31 ...........T................C GATGATTGGGAAGGTTACAAGTTTGACCATA 3526345 29 93.1 31 ...........T................T CACCGATTTTCTCTGTAAGCTCTTTCAGGGT 3526405 29 96.6 32 ...........T................. GTTATGGCCATCAAGATTGGACCACCTTCCCC 3526466 29 96.6 31 ...........T................. GCAGAATCACACCATTCGCAACTTGTATTGT 3526526 29 93.1 31 ...........T................T GAAGAGAGAAGAGACATAGAGGTACAAAGAA 3526586 29 93.1 31 ...........T................T GCTCCACGATGAAGTTAACAGCATGAATACG 3526646 29 93.1 31 ...........T................T AAGCGGTTCATGAGAATAGTTAATGAAATGA 3526706 29 96.6 31 ...........T................. ACCCAAGAATGACCATCTGAGCCCCAACCAC 3526766 29 93.1 31 ...........T................C AATGCTGAGTTAATAGTAAATGATGAGAAAA 3526826 29 100.0 31 ............................. GTATCACTCAAGTTGAGTCCATATTGGTTTG 3526886 29 96.6 31 ............................T AAAGCCTATTCAGTGAATAATTAAACGCTTA 3526946 29 96.6 31 ............................G TAAAGCTCTGGGCTACATGAATCAACGCTAT 3527006 29 100.0 31 ............................. GTTCGTGTGAATACAACGATGCAACCAGGAA 3527066 29 96.6 31 ............................C TCAGTGCTGTTCGCTTTTTCAGCGTTGGCAA 3527126 29 96.6 31 ............................T TTGATGCATCCTCTAACTTCCCTGCTAGCCT 3527186 29 100.0 31 ............................. GTGCAGTTACCGCCTGTTTCTTTTCGTTCTT 3527246 29 100.0 32 ............................. AAAGGCACGTTCGATAGCTCGGACATAATGAA 3527307 29 96.6 31 ............................G GATGTATTCAACCGGAACGGTTACGCAACGC 3527367 29 100.0 31 ............................. GAACCTGAGAAACTAACTGGTGGAAAGCGGA 3527427 29 100.0 31 ............................. GGTCGCGAACTCGCATTGATGATATCTCTCA 3527487 29 96.6 31 ............................T TTATATAGGGCGTTGTGAAATGGGCCAGCTT 3527547 29 96.6 31 ............................T TATCGACTTTGACCTCCGCTTTCTGTTCCAG 3527607 29 96.6 31 ............................C AAATTCCAGGGTCACCTTTCGGTGGCCTTTT 3527667 29 96.6 31 ............................T AATGGACACGTTATCTCAGGGGGCTTAATGA 3527727 29 96.6 31 ............................C ATGCTTCAGCATGCTTGAAACAGTCATTGAA 3527787 29 100.0 31 ............................. TGATTTACCCGTTGCTGTGTAGGCTCCTCCG 3527847 29 96.6 31 ............................G ACGACAAACCCGACATGACCACCGCCATTAC 3527907 29 93.1 31 ...........T................G GAATTCAATCAACTCGCTTCGAATCAGCCAA 3527967 29 93.1 31 ...........T................T GTACGGAGCCAACCTGAGCGGAGCCGACCTG 3528027 29 89.7 0 ..............C......C......T | ========== ====== ====== ====== ============================= ================================ ================== 33 29 96.2 31 CTGAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : GGCATGACTGAAAAAGCACTGGCTGAGATTATTGATTTATCCCGCCAGCGCTGGCCTCTACAGCGGGTGAGTGTTATTCACCGTATTGGTGAATTATTTCCCGGCGACGAGATTGTGTTTGTTGGCGTAACCAGCGCCCATCGCAGCTCGGCTTTTGAAGCCGCAGAGTTTATTATGGATTACCTGAAAACCCGCGCGCCTTTCTGGAAGCGCGAAGCCACGCAAGAGGGCGATCGCTGGTTGAATCCCGCGATAGCGATAAGCAAGCCGCCGAACGCTGGTAATCAAGTTAAGTCCATCAACGGTTAGCAATGGGGTATATCTTTATATCCCATTGGCTCCCGTCAAAGACGAGCTATCACCCTTATTTTCGCTATAAATATAAAGCCAATAAAATCAGCCTATTATGGGTGGTTGATAAAAATGGTATTTTAGCTATAGCGATCCCAATTTCCTGATGTTTAGCGGCGTCAGGCGGTGTTTTTATGCTAAATTCTCTA # Right flank : TACGCCATAAATTGGCCTCTAGCTCGGTTACCCAATATCCCGCCCCAGCAACCAACAATCCCACCACCTTGGGTAAACATCCGCAGGGGAAAATGTTACTATTCGCACGCCAGTTTTTGGGGGCGTCAGGCCGCTTGTTATTTCATCAGGCTAAATGAACTTTCCCCCGCTAATGATGATTTTTGATAGAGGTTTTTTTCATGACACGCGTTGCAATGGTATATCACAGCGGATACGGACATACGGCAAAGGCTGCTGAGGCAGTAGCTAAAGGGTTAATGGAAATAGGCGGAACCCATCTTGATATGCTTCCCATCGATGCAGAAGGTAATTTGCCCGAGGCTGCGTGGGCTATACTCTGTGCCGCAGACGGCATTATTTTCGGTAGCCCGACCTATATGAGCGGCCCGTCATGGCAGTTTAAAAAATTCGGCGATGCCTCTTCAAAGCCGTGGGCTGCGCAGCAGTGGAAAGATAAATTGTTTGCCGGTTTCACTAAT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : CTGAACCGCCGTATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //