Array 1 18391-17960 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPCI01000024.1 Pseudomonas cichorii strain REF Contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 18390 28 100.0 32 ............................ CAGGTCGAAGCCAAACAGCAAGCAGAACGCAT 18330 28 100.0 32 ............................ CACAGCATGCCGTGGCGCTGGCCGCGCTGGTG 18270 28 100.0 32 ............................ TGACGGAATGCCAAGGCCAGCAACTGGAACGC 18210 28 100.0 32 ............................ GACAAAGGTGTTCATCAAAGCCGACAAGGGTC 18150 27 82.1 135 ..........-.........TGA....G ACACTCTGCTCGATAACTCTCCGTATTCAAAGAAAAATATGCGTTTGAGGCCGTTTTACCCCTTTTTTCATCACGCTTTGTAAGTGATTGATTTTTAAAGGATGAACCCAATGTGAAAAAAAGAGGGTCCAGAAA C [18135] 17987 28 85.7 0 ......G....C.C....C......... | ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 6 28 94.6 53 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGTCAAGGTGGTTAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTCGAGAGTGGGAGTGTTTGCCGCTGAGATATCTGGGTGAGTACGGGCGGATTTATCCGCGAGACGTCACTGAAGACAATGAATTTCATGTGATGAAAGGTTCATCCCGCAGACCCAACCCCGTGGGAGGGTCCTTGGCCGCGACAGCTTTCACACAAAATATGTCCGGAAATGGAGCTTTCCAGGCTGTCATGTCGCAATTTCCGTTTTTTAGCGACACGTTATTGGGTCATGTCGTTGGCGACGACCTATCAAAAAGCACGGCGCTGTCGCAGCATATGAATATCTGGCCACGGCAGACAGGAATGAACCCTTTTCTGACCCTCTTTTTTTCACCATAGGTTCGTCCTTTAAAAATCAAAGACTTACAAAACTTGATAAAAAAAGGGGTAAAACGGCTGCAAGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : ATCGACTCAGGCAGGCATCGATGGAAACCGCGACCAGTCGCCAGCAAGCTGTCTCCCACGGTGCTCTGACCTTAACGCATACAGAGCCAATTCATTCGCGAAAGGTGTTTGAATACGGCTTTCCCGGATGAATCCGGTCCTGCATATGTTTGAAGGCCACCCTGCACAAACCTTCTAGACTTCCCGTCTCCCATACGCGATAACACTCAACCCGACCCCAAACCCTGTAAGCCCACCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGACACCGGTATCGAGACGTTGCATGCCCATTTCCAGGGGAATGCTCATGTCTACGATCCGCATTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAAGGGGTGCAGCAGTTTCATTGTCGGCGGCAGCGTTATGCCTGTACGCCGGGGCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCAAGCGCAGACGGTTTTACGTACCGGAT # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-2.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //