Array 1 1-1003 **** Predicted by CRISPRDetect 2.4 *** >NC_021056.1 Streptomyces sp. PAMC 26508 plasmid pSP01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ AACAACCGGCAGCAGAAGGGCAGCGTGCTGGG 61 29 100.0 32 ............................. AACAACCGGCAGCAGAAGGGCAGCGTGCTGGG 122 29 100.0 32 ............................. AACAACCGGCAGCAGAAGGGCAGCGTGCTGGG 183 29 100.0 32 ............................. AACAACCGGCAGCAGAAGGGCAGCGTGCTGGG 244 29 100.0 32 ............................. ACCCGGTATTGCGCGTACAGCAGGGCGAAGGC 305 29 100.0 32 ............................. TCCCGGTTGCTCCCTCGGGTTGCGCCCGGTTG 366 29 100.0 32 ............................. AGCCCGGAGTTCCCGCGCGTGGACGCAGGTTG 427 29 100.0 32 ............................. ACTTGCCGATGGGGTACGAGAAGTGGGAACGG 488 29 100.0 32 ............................. TCTGGTACGCGGCCCGTCGGGGCTGCTCGACG 549 29 100.0 32 ............................. TGGGCCCAGTGACGCGGCGAGCGGCCGGGGAC 610 29 100.0 32 ............................. CGTGCGCCACAGCCACAGACCAACCGCGCCGA 671 29 100.0 32 ............................. TCTCGGCGCTTGCGGCCCTGGAGGTCTTCGCT 732 29 100.0 32 ............................. GCACTAGGTAGTGCGTAAGGTTTGCCTCCTGC 793 29 100.0 32 ............................. CACCTCGCCAAGCTGGACCGGAGCTTCAAGCC 854 29 96.6 32 .........A................... GGGTACAGCCGCCCGTGGGTGTCCGCACGGCT 915 28 93.1 32 .....................-.A..... GGGCCGGAGGAATCGTTGAGACCCGCACGCGC 975 29 89.7 0 ................AC......C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : | # Right flank : CCACCCACCGCATCGATTCCAGCACGTGCCCTCCGTGCTCGAGCGCATCGACCGGGCACGGCACACAATCTCCTTCGTCAGCCACTTTGCCGAACCCGACTCCTTCGCCTTGACCGCCCTGGCACAGTGGCTCGACACCAGCCCAGGCGGCATGGCAACGACTGCGGAGGATGGAAAAGGCATGGAATCCGGCACGGAAGGCACCACCCCATCCAACCCTGTCCAACAACTCGCCGCGCACATACGAGACCAGCTCGGCGCAGGCCCGTTTTCACAGGCCGCCGGCTGGACACACATGGGCGCCGTCATCAGCGACGCGAGCTTCCAGGCCCGCAGCCGCTACAAGGCGACGATCCTGCCTCGCATACTCACCCTGCAGACAGCATGGCTGGACGCTGCCACGGTCAAGGGCTTCCAAGCACGACTCGCCACGGATGACCTCGCCACAGCCATGAACTTCCATCACGCCCGCAAGGTCGCCAAAGCCCACAACATCACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41009-40553 **** Predicted by CRISPRDetect 2.4 *** >NC_021056.1 Streptomyces sp. PAMC 26508 plasmid pSP01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41008 29 100.0 32 ............................. CCCATGAACATCGTCACCGTCGGCGGCGTCAC 40947 29 100.0 32 ............................. GGCGGGACCATGAACGTCATCCGCGTACCGGG 40886 29 100.0 32 ............................. GGCGGGACCATGAACGTCATCCGCGTACCGGG 40825 29 100.0 32 ............................. AGGACCGGCATCAGCCCATGGGCCAGGGCCTT 40764 29 100.0 32 ............................. GCGCGGGTGCGGATCGGGTGGGGCTTTGCGGT 40703 29 100.0 32 ............................. CACGGCTTTACGAAGCCCTCTGCATTGGCCTC 40642 29 100.0 32 ............................. ACGTTGCGCTCGATGGTCTGCAAGCTGCGGCC 40581 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCGGCGAGATCAGCTTCATGAGCGAGGCGGGCCGGTGGGTGGTGAGCGAGGTCAGTAACCAGTCCACCGGGTATTGCCCGGACGTCACCTCCTGGGCGGAGGTCGCTCCCGCTCTGGACGCTGCAGAGCTCAGGCGGCCCAGCGGCTTCACCCACGAGGTGGTGTTCCGGCGGTGCCCCGACTGCCAGGAACACAACATTGTGCGCGAGGGTGACTTCGTCTGCGTCTTCTGCGGCAGCGATCTGCCCACAGCGTGGAACGTGGATCCCACCAAATGACGGTTCGGGGGTACAGCCGATCGCTGATGGCAGCGATAAGGACGGACTCCCGCTGGGGGACCGGCCCCTGCTGGTGGCAGCGTGCGCAGCGCATGGATTTGACCATGCGTTAGCTCGCCCGCTGCTTGGGGTGTCATTTAGGGCGATAGAAGCGGTTTGTCGAAATCGATGAAAGTGCTGCAGAACGTCTCTCTTCGCTGACAAAATCGCAGTTCAGCAAGA # Right flank : TGGGATGTGACCGCGGAGAGCCGTCCACCGGCGGCTCAGCACTATACTCGAACATGTGTCCGAAAAATCGTCGAGGCTGGACAAGCTGCGCTTCCTGCTCCGCGTCCAGGAGCAGCAGCTCGACGTGACCCGTCGCTGGATCGCGGACGAGGAGCGGCGCCAGGCCGAGCGGATTCAGGGGGAGAGGGCCCGTCCGCCGCAGCCGGACTGGGTGATGGAGCTCGGGATCGGCGTCGGGGCGAAGCCTGTCGAGATTCATGTCGGCCACTGCTACGCCATCGGCCGACGCCGAAAGGCGATTACCCGGGAACAGGCTCTCGCTGCCCTCGCCGAAGGAGTCGATGCCTGCACGCACTGCCGGCCGGACACCGACCTCGGACTTCTCTGAGTCGACGAGCGGCCCTGCAGCGGCCGCCCCCGGCTGTGCATTCGCGGGGGCGGGCCAGATATGCCGACGTGCCGTTCCGGCCCGTACGGGCCGGTCCCGAGCCAGGCTCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 51349-51075 **** Predicted by CRISPRDetect 2.4 *** >NC_021056.1 Streptomyces sp. PAMC 26508 plasmid pSP01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51348 29 96.6 32 .........A................... CAGACGTCGTAGGAGACGGCGGCCGGGTCGGG 51287 29 100.0 32 ............................. GTGATCCGCTCCGGGTTCGCCGCGGCGATCAG 51226 29 100.0 32 ............................. ACGTTGCGCTCGATGGTCTGGAGCGACCGACC 51165 29 89.7 32 ..............T............GT CACGCTGCGACCGGCCCGGGAAGCATCGCGTC 51104 29 79.3 0 .....T....G.....TA....A..C... | A [51081] ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GTATGGGTCGACTGGCTGCGGACCACCTTCGAACTGCACAACAGCATCCCGACCTGCTGGTACCGCCACTCGCCCGTCGTGGAACACCTGACAGCTCTGTACGCCGGTTGGATCCGTACGTACGCCGGCGAGCAGGTACCTGGCCGTGAGCTCGCGGAGGTCGACTGGATCAACGCCCTGCACGCGCTGACCCCGCGCCTGCAACTGGCCGCCTGTGCCGCCGGGCAGCATGAGGAGCCGCCGCCCATGCCGCGGGAACGTCCCGAAGCGGCAGACGACTTCGAGACCTTCCTCGACACCTCGCGGACCACCACCGAACCGGCCCGGCACCCGGCTGAAGCCGAGCTCGGCGGACGGCGGGCTGAGAATGCTCTGACTGGACGTTGATGCAGCCAAGGCGACATGTTCTGATGCACTGGGATGAAATGGTGGCTTTGTCGGATTCGGTGAAAGTCATGCAGAACGACGCTCTCGGATGACAAACTCGCAGTTCAGCAAGA # Right flank : GCCTCCGGCTCGGACCGTAGAGACTTCGGCTTCTCGCGCTGCCCAGGGGGCACCAGCCTCAAGCCGCCTTCCGGTATCCGAAGGCGGCTTGTACCCATGATGCGGATGAGTGTGCCGTGAGGTGGTGACCGAACGCGTGGAAGCGATGGCAGCCGTGTGCGGTGGCCTGGTGGGTGGTCGGTGTCTACTGGCTGCACGTGGGCAGGACGGTGGTCACCTGGGTCAGGTGGTCGGGGCGGAGGCGGATTCCAGGGAGCCAGAGCTGTCCCTCGTGGTGCGTGATCCGGATCCAGATGCTGGTGTGCTTGAGGTTCTCGTCGGTGACGGTGACGCCGTTGGCGACGAAGCAGGTCGCCTGCAGCAGGTCGTGATGCCAGACGCGTGCTGCGGAGTTGGCGGTGTTGTACGGGCGGTAGGGGCTGTGGGCCAGAGAGAGTGCGCACAAGGTCGTGCGGGGTCTCTGACATGCCCTCTCGACGTTGTGGACCACAACACCGAGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 79879-78937 **** Predicted by CRISPRDetect 2.4 *** >NC_021056.1 Streptomyces sp. PAMC 26508 plasmid pSP01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79878 29 100.0 32 ............................. TCTGCCGCCAAAGTGGGACGGAGACCTAAGCG 79817 29 100.0 32 ............................. CTTCGTGCCGATGGCCGCTGTGCCTGCGGCGG 79756 29 100.0 32 ............................. CCCTTGTTCGAGATCGACAAACTCGGTGACGC 79695 29 100.0 32 ............................. CACCGGGTCGAGTCCTTCTGGAAGGGCTGGGT 79634 29 100.0 32 ............................. GCGTACCACCACGCTCCGGTGATGACGTCCCG 79573 29 96.6 30 ............................G GCCCGGCCGGGCTCGACGAAGCCGACGTGC 79514 29 100.0 32 ............................. CCCGGCACCAGGAAGGACACGCATCATGCCCA 79453 29 100.0 32 ............................. TCCGCCACCTGATCCGACTGAGAGAGGACGCA 79392 29 96.6 32 .............G............... CTGCTGTGGAAGGTCGCGTCCGGCCAGGATGT 79331 29 96.6 32 ......................C...... CCTCGACCGTGACCCGCGCTGACGAAGCGAGG 79270 29 100.0 32 ............................. ATGGGGGCGGCGTCGGAAAAGAACTGCTCCAT 79209 29 100.0 32 ............................. GTCCTCGGCGGAGAGCCGGAAGTCAGCGTCGG 79148 29 96.6 32 .........A................... AGCGACAAGCCGACCCTGCCGCGCAGACAGCA 79087 29 96.6 32 ......T...................... TGATCGCCGTACTGAACGCAGGAGGGGGGAAC 79026 29 89.7 32 .................T.......C.G. GTCGGGAACATGGGCGTTGACCTCATGTTCGA 78965 29 89.7 0 .....T................A..C... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCCACAGACGGATCGCCTGAGCGATGCCCTGGTTGAAGGGGATGCCGCGCTGCTTGCAGTCGTTCTTGAACTCCCCGTACAGCCCTGTGGGCAGATAGGTGGAGAACGAACTGCCGCCAGTGGTGTCCACGGGGACGCGCTCGGCATCATCTGCACGCCATGCCTGCACGCCTTCGGTCACGGCGTCCTTGATGTCGACGCCCAACTCGGCAGCTCTGACCTTGAGTTCTTGCCGCAAGGTCGCTGGCAGCTTGGCGACTACCTTTTCCCTGTCGTCAGGGGAGTATGGGACGGTCATGCGGTTACCTTACTCACCTCGGCGGGGGCTATGGCGCAGATGTCGTCGGAAGTTTGTGGCGTGTCACCCGGATGGAGCAGGAATGCTTGCGGGTGGGTCGCTCGCAGTGCAGGGCGAATTGGGCTTAGAGAGGGAAATGCCCGAATCAATGAAAGTGCATCAGAATGGGCTCGACCGCTGATAGAACTGCAGGTCAGTCAGT # Right flank : CATCTCGCAGTCAGAACCGGCCGCTGAGCTTCCTTCCAAAGCCTGGGCGGTTCTCGCCCAGGCCCTTGAAACGATCGGCGTGGCGTGCGTCGAACCGGGTCGTGCAGACTCTGGGCGGCGACAACTAGCGTCTAGTGGGGGTTTGGTGCGCAAGAGAATGATTCTGGTGGCCGCGGTGCTGCTTGCTGTGGCCACCGGGTGCGGTGGGGGAGACGACTCGGCGGTGGCGCATGAGAGCCCGAAGTCGAGTGCGTCGGAGACGTACAGCCCGGAGGCCGAGAAGTGCTTCGCGGATGTGCTGAAGGCGGTGCACCTGACTCTGAAGATGGATGAGGAGGGGTACGAGCCGGCGACGGAGGAGGACGTGGAGCACAGCGAGTTCTTGCAGGAGGCTGCGGGGACCCGGCTGTGGGACATCTACGAGTCGTACACCGACATGGGTGCTAAGGACCTGGCCGGTGGTTCGTACGCCTCGGCGACCGATGCAGCGTCGTCGTATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 92566-91192 **** Predicted by CRISPRDetect 2.4 *** >NC_021056.1 Streptomyces sp. PAMC 26508 plasmid pSP01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92565 29 100.0 32 ............................. ACGATCGACGTCGCCGCCGCGATCCTCACGCA 92504 29 100.0 32 ............................. TGTGTAGCTGTCGTAATCTTTAGCTATGAAAC 92443 29 100.0 32 ............................. GCCAGGCAAGCCGAGCCGGGGTGAGGCACTGT 92382 29 100.0 33 ............................. GCCAGGCGGCGGTCGATGACGATGCCGTGGCTG 92320 29 100.0 32 ............................. CCGTCCGGAATCAGGCCGAAAGTGAACCCGCT 92259 29 100.0 32 ............................. GCCCAGGCCGCAGCCGACATGGAAGCCGCCCG 92198 29 100.0 32 ............................. GGGTACAGCCGCCCGTGGGTGTCCGCGAGGCT 92137 29 100.0 32 ............................. CCGCGCGGCCACGCCCTCCTGGACCAGCTGTA 92076 29 100.0 32 ............................. ACGAAGAACAGCGAACGAATCAGCGAACCCAT 92015 29 100.0 32 ............................. GAGGGCAAGAAGCCCTCCCAGCAGAGCAAACA 91954 29 100.0 32 ............................. TGCTGAAACGACGTACCGCCTGAGAACAACGG 91893 29 100.0 32 ............................. GAACAACACCCCTGATGGGACCGGCGTACCGC 91832 29 100.0 32 ............................. GCTCACAGTTTCGTGAGCGTCAGCAGGTCGGA 91771 29 100.0 32 ............................. AAAAGTGAGCCCGGTACACCGATTGATACAGG 91710 29 100.0 32 ............................. GGGCGTAGCTGTCCCTGCTGCAGAAGCTCGGG 91649 29 100.0 32 ............................. GAGACGCGCGCCGACGACGAGGACGACGTGAA 91588 29 100.0 32 ............................. AGGCCGACGCGGACCTGATCCCCGAGAGCGGG 91527 29 100.0 32 ............................. TGGTCCATCATGTCGCCGAGGTACTTCGCGCT 91466 29 100.0 32 ............................. GACGCCTGCGAGTACCCGCCCACCGTCTCCGT 91405 29 100.0 32 ............................. GCTGCGGAGAGCACGGCGAAGGTGCTTGTCCG 91344 29 96.6 32 ..............C.............. GAGCCGAATCCCGGCGGGGACGGCATCACGGT 91283 29 96.6 32 ..............C.............. CTCTTCCGGACCCTGGCCCTCGCGCTCCTGGT 91222 29 82.8 0 .............CC.......CAA.... | C,G [91196,91201] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 CTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : TTGCCGATGTCGTGCACGCCGGCCAGCCACACAACGAGACGACGTGCGTCGTTCGCTCCCTCCGGCAGCTCGGCGGCTATCAGCCTCCGGACCGAAAGCGGCAGCCACTCGTCCCATAACCGTCCTGCTACCGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAGCCACCCATCGGAGTCCCGATCGTGCTTGGCCCACACCTTGAGCGAGGGACCGCGCAGTCTTGCGCGCATGCCGGTGTGGGAACCCCCCTCGACTGTCATGCCAGATGAATATCTGGAGGGGGCATGAACGCGCAGCCAAATGATGAAACAGCGGAGAATGTGTGCTTGTTGTGGCTGTTATGGCTCCGGCTGGGGCTGGTGCTCAGTAGAGTCGATCAGTTGGGTGCTGGTGACACCTCAGGCGGCGTGATGGGTGAAATGAGTTTTATGTCTGTTTCTTTGAAAGTACTCAGAACTGAGTCCCTGCGGCGATAAAGCCGCAGGTCGCGCAGT # Right flank : ACGCCCGTGCCGGTCTATCCGGATTCGGCCATATTCCAGCGAGCAAGTGGAGCTTCCGTCGAACCAAGGCCACAGCACCTGACGCGCCACTAGATTTTGCTGATTGCGCCAGGGGGTGCAGCAAGTGCTGGCTCGTGCAGAGGAGGTCGGATGCTTTCGGGGGCCGAGGGCGCGCTGTACGGTGCCGGCGGCGGGCTGGTGGTCGAGGCTGTCGTGACCTTCGGGCGACTGCACGCCTGGCAGCAGGCGCGGCATGTGTCGCGGGTGGCCGGCGATGTCCTTCCCAAGCTCGGTGCGTATATCGATCCGCCCGCTGATTCGCTCGCTGCGCTGTTCCGGGTGGTGCTGGGCTGTGCTGCGGGGTGGTTGCTCCACGGGGAGTTGGGCGGGATGCTCGCGGCCGTCGCGGTGGGGGCCTCTGCGCCTGCGGTGCTGGCACAGATGGGCAGTGCTACGACTGTCACCGAGGCGCTGCAGTTGGGCACCACGCCCGGTGCGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //