Array 1 4179-3111 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBM01000030.1 Ralstonia solanacearum CaRs-Mep scaffold30_size48225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4178 29 96.6 32 ............................C GCGCCGGTTAGGCGAGCACGTCCTTCAGCAGC 4117 29 100.0 32 ............................. CATGGCTCAGCGTGTAGGTGTTGCCGTGGCCT 4056 29 100.0 32 ............................. GATGGTGAATTCTCCATCGTGCGTCTGTCGGA 3995 29 100.0 32 ............................. TAGTACTGGGAAATGGCTACAGGGTCTGCCCA 3934 29 100.0 32 ............................. CAATGGGCCAAGTAGCCACGCAACCAACTCGC 3873 29 100.0 32 ............................. ATGACCGAGGCAATGAATCGTGCTGGGGTCAG 3812 29 100.0 32 ............................. CGGCTGAGTTTGGACTAGACAGCAATGGTTCA 3751 29 100.0 32 ............................. GATGGCATGACGATGGGGTGGGGCGTCGTTGC 3690 29 100.0 32 ............................. ATCGGAACCGCTGGTGCAGCCCTGGCCATTTA 3629 29 100.0 32 ............................. TTGCGATAATGCCTCTGCGGCTTGAACCTGTG 3568 29 100.0 32 ............................. CAGCGGGCGTCCGGAACGTCGCCGCTGCCGCA 3507 29 100.0 32 ............................. TTTTGCGTAGCTGATTCGAGCGCATCAATGCA 3446 29 100.0 33 ............................. CGTGGACGCATATACGCCGTCTGGCATGTTCGG 3384 29 100.0 33 ............................. AATTACAAAGACAGCCTCGATGAGCGGCTGGAG 3322 29 100.0 32 ............................. GCGAACAGCGGATCCGCGCTGCACGTGCGCGA 3261 29 100.0 32 ............................. AGGAAGGCGAAGTCGCGGAAGGGGTCCTCTTC 3200 29 86.2 32 A..........A.A..............A GTGCGCGAGAACGGCGTACCGTTGACCGTCCC 3139 29 93.1 0 ..............C.............T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : GTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATCGAGGGCAAGCTTGGCTACTTTGTCGACTGCGTGCGGTAGGGCATCGCTGCGAGCTTTTGCCCCTGAGGTCAGTTGGTAGATTTTTGGGGGGCGATTTTTTGGTTTTGGATCAAAGGCTTGCGTTAAGT # Right flank : TCAACCAGCCCCAGCTCCCTGACCGTCTTCCGGAGAATGAAGAAAGTTCGCGCGGACTCGTGCTTTCCAATATCCCACTTGGGCGATCTTGATATTTTCTGAGGCCATCGACAAAGAGCAGAAATAAATACCCGCGAGACTGTTACGATCACCCGCTCGGGAGCCGGCAAAGATAATAAAATTTCCTGACACCAAAAAAGTCATCAGGCTGACATGGCACAAGGGGCGTCGCGATATTTTGCATATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCGCTATCACCTGCTTGTCTTTCACGCATTGGATGTGGCGGCTTGTGGTGCAGAGCTGTTGCGTTTGCCTCGATTTTCCCTTGCGCCCATGGCTGCGGAGCTTGGTTGGCCGTTAGCCGTTGTCAATCAAATATTCACGTGGTTCTTGGCGTTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGTTTATCGCCTGATCTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6531-7414 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCBM01000036.1 Ralstonia solanacearum CaRs-Mep scaffold36_size45335, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6531 29 100.0 32 ............................. TCATCCCGAGCCGCGATCAGCACTCGGCTGCC 6592 29 100.0 32 ............................. GTGTGGGCGCCCATCAAATGGCAGTTTCCAGT 6653 29 100.0 32 ............................. TCACAGGCAAATCCAACCACGTCAAATGTGGT 6714 29 100.0 33 ............................. GGTTCCGGTTCAAGGACTGGGCTGACTATCAGG 6776 29 100.0 32 ............................. AGGATTGAGGCCGAGCAATTCGGCCGCGCGAA 6837 29 100.0 32 ............................. TCGATTCAAGGTCGCCCGACTCGCAGGGCAAC 6898 29 100.0 32 ............................. CCCGCCGGGTGGCGTGCATGGCATGTTGTGTT 6959 29 100.0 32 ............................. CGGCCAAGGTCGGTGAGATCCCGATGCTGGAG 7020 29 100.0 32 ............................. GCCTTGGATAGGGGAATAACCCCTGAGCAGTT 7081 29 100.0 32 ............................. TCTCCCTTACACCTTATAGGCGATAAATATGG 7142 29 100.0 32 ............................. GCGGACATGGCCCTGTCCGATCTGGCAACGGC 7203 29 100.0 32 ............................. GTACGACAAGAAATCCCCCGCCGGACACGCGA 7264 29 100.0 32 ............................. TTTAATCCGCTAAACGAAATTGTTAAGTTTGT 7325 29 100.0 32 ............................. TGTAGTTTCGACTAAACCATATGTAAAGCAAA 7386 29 93.1 0 ........................TC... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : CCGCATCATCCCGGCCATCGAAGAGGTGCTTGCGGCAGGCGGTATATCGCCCCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCGTCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTTGCCATCTGGCTGCTGGAGGTGCGTGCCGGTGTATACATCGGCGATGTCTCCCGCCGCACGCGCGAAATGCTCTGGGAGCAGTTGGTCGAGGGGCGCGAAGGCGGCAACGTCGTCATGGCCTGGGCCAGCCAGCACGAATCAGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGATGGACTGCAGCTCGTGGCCTTTCAGCCGGCAGACAAACCTGCTCTTTGACAACGCGAATAATCGGTGCCTTTTAGGTGGTGGAAATTTCGCTTCTTAATCAGGGGCTTGGGTTAAGT # Right flank : GTCGACTTCGCCGCAGGATTGGATCAGCCCGCCAACGCCGCCCGCGCAGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //