Array 1 345995-347945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMQ01000008.1 Listeria monocytogenes strain NRRL B-33177 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 345995 36 100.0 30 .................................... TTTTGATAATTATTCGGTGTAGTCCTTCCT 346061 36 100.0 30 .................................... ATGTGAATTGTGCTGTTTTCAACGATGTGT 346127 36 100.0 30 .................................... TGTCCTAGTTACTGTTCTAATGTATGATTC 346193 36 100.0 30 .................................... TTTGTTGTCATACCAAGCTAGTTTAACACC 346259 36 100.0 30 .................................... ATAAGATTGCTGAACGTCAAGGGAAGATTG 346325 36 100.0 30 .................................... GTGTTTCAGCACCTTGTCCACCGCCGCTAT 346391 36 100.0 30 .................................... CTGATGAAAAGTCAATATATCAGGCTCACA 346457 36 100.0 30 .................................... GAGAATTTGTATTTTTAGAGGAAACCAAGG 346523 36 100.0 30 .................................... TGCGGGAGTGAAAGGAGTGATGCGGAGAAT 346589 36 100.0 30 .................................... TAGCACCCTCGGCCATGCTAGCTGCGGCTG 346655 36 100.0 30 .................................... TTTTAGCTCATATAGAGTTGAGTAAGGGTT 346721 36 100.0 30 .................................... GACAGTTGAAATGGTGAAACATACAGTTGA 346787 36 100.0 30 .................................... CCAGGGGATGACGGAAAAAGATGTCTATAG 346853 36 100.0 30 .................................... TGGGGCTATGATGGCATGGATGATGGAGTG 346919 36 100.0 30 .................................... TAAGGACTCTCTACACCAGTGAAAACAGCT 346985 36 100.0 30 .................................... GAGAGGCATGGAAAGCAAGCAAGGTGAAGG 347051 36 100.0 30 .................................... TCGAAATTAGAAAGAATGACCGCGATTTCC 347117 36 100.0 30 .................................... TTACTAAGCTTCTTTTTTTACCATACGCTG 347183 36 100.0 31 .................................... TAAAGTTCTGTTGAAAAGTTGGCTTCTCCGT 347250 36 100.0 30 .................................... TTTTTTTCGTTTTTGTATTTTGTGATATGA 347316 36 100.0 30 .................................... AAAGTAAAAACAAACTCAACACAAGACAGG 347382 36 100.0 30 .................................... TGAAACAAAGCTACTTGATAAAATTATTCC 347448 36 100.0 30 .................................... ATCCAATTATTTCGGAAAACCTTGCTCCAG 347514 36 100.0 30 .................................... CGTCATGTTCTAACTTCAAGTGCGCTTTCG 347580 36 100.0 30 .................................... ACAGATTTTTTCACTTCTTCGGCCATTCCT 347646 36 100.0 30 .................................... TGAAACAAAGCTACTTGATAAAATTATTCC 347712 36 100.0 30 .................................... TGTAGAGGAGGTAAACTTCCAATATAAGTT 347778 36 100.0 30 .................................... AGGTTTATCCGAACTAGAAGATAAAATTTT 347844 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 347910 36 94.4 0 .........T................T......... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATGGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGGGCTGGTTATTTTAGGCGGGGGAGCGCTTGTTTTAGAGCTATGTTATTTTGAACACCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGATCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAACAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTATTTTTGAATAAAACAGAACTGCTGATCTAGAATTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 11802-10994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMQ01000010.1 Listeria monocytogenes strain NRRL B-33177 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 11801 29 93.1 36 ..........T...T.............. TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 11736 29 96.6 36 ..............T.............. TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 11671 29 100.0 37 ............................. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 11605 29 93.1 36 ..............T...A.......... AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 11540 29 93.1 35 ..............T...A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 11476 29 93.1 36 A..............C............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 11411 29 93.1 35 ..........A...T.............. ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 11347 29 93.1 36 .........G....T.............. AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 11282 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 11217 29 93.1 36 ..........A...T.............. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 11152 29 96.6 36 ..............T.............. AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 11087 29 100.0 36 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 11022 29 75.9 0 T.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 93.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //