Array 1 33-2441 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONU01000007.1 Planosporangium flavigriseum strain NBRC 105377 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 93.1 32 A...........................T GCCGGGGCGGCATCCCGCCGGTGTCGTCGGCG 94 29 100.0 32 ............................. GTCACCCCGATCGGTTCGCGTCGCGCCCAGAC 155 29 96.6 32 ............................G TGCAGGGTCGCGCCCTTCGGATGCTGGAACCG 216 29 100.0 32 ............................. GTGGTGCGCACCGAGACGCTCGACGCCTACCG 277 29 96.6 32 ............................T TGACCGTGGCGTCGGCGGTCGGACTGCGGGTG 338 29 100.0 32 ............................. GCGTTCACCCAGCCGTACTGGCTCGACTTCGC 399 29 100.0 32 ............................. GAACTGGTGGCCGTGGTGACCGAGGCGCGCAA 460 29 96.6 32 ............................G TACTCCGCCGGGCCCGCACCGGGTGGCCGATG 521 29 100.0 33 ............................. TTGGACGAGGTGGCGGACCCGTTCGACATCGTG 583 29 96.6 32 ............................T TCGGCGCGCTCGTACCGCCGGCTCGGGTACGG 644 29 93.1 32 ..............T.............G CTCGGCCGCGACGACCTGCGCATCGTCGGGGT 705 29 96.6 32 ............................G AAGTCGCTGCTGGCGGCGCAGCCGACCGCGAG 766 29 96.6 32 ............................A TCAACCACCACCGGATGCTGTCGTGGTCCGGC 827 29 96.6 32 ............................A TGGTGCCACCAGTACTGCGCCAACCATCACCC 888 29 96.6 32 ............................A GGGAAAGCCCCGAGGAGAGCGTCAATTTCTCC 949 29 96.6 32 ............................G ACGTTGCGGTTGACACTCTCGCGGGTCTTGCC 1010 29 96.6 32 ............................G GGTCTCGACTCGGTCGACCGGTTGATCGATAA 1071 29 100.0 32 ............................. TGACGGAGGCTGCCGCCCCGATGGCCCCGAAG 1132 29 96.6 32 ............................T ACGTTCGAGCAGCCCTCCATGTCAGTGCGCTG 1193 29 96.6 32 ............................G CAGCTGGCCCAGGCCGTGCTCGGCGGCGCCTC 1254 29 100.0 32 ............................. GTGGCGCGCACCGAGACGCTCGACGCCTACCG 1315 29 96.6 32 ............................T TGACCGTGGCGTCGGTGGTCGGACTGCGGGTG 1376 29 100.0 32 ............................. ACCTCGGCGATCCTGTCTAGCGTCCAAGCGAA 1437 29 100.0 32 ............................. AGCGCCGCCATCATCGCGGCCATCTCGCCGGC 1498 29 100.0 32 ............................. GTGCTCGGCCGGATAAAGATCACGAAGCCGGA 1559 29 100.0 32 ............................. TCGACGTGATGCTCGACGTCCTCAACGGAGTC 1620 29 96.6 32 ............................T CGGTCGACGACCACAAGATCCTGGGCGAGTCG 1681 29 96.6 32 ............................G CCGCCTACGTCCTACGAGGCAAAGGCTGCGAC 1742 29 96.6 32 ............................G CTGGAAGCGCGGGGTTCCGTGCTGTCTGGGCT 1803 29 96.6 32 ............................G CTGTTCGAGCTGGAGACCGACGCCGGCCTGGT 1864 29 100.0 32 ............................. TCGCCCGTGACCGGGTGGAAGCGCACGATGTG 1925 29 96.6 32 ............................G ACCGACACGATCTCGGTGGGGTGGATCAGGAT 1986 29 100.0 32 ............................. GACTCCGACGAGCCCCGCTCGGCGTTGTTGAC 2047 29 100.0 32 ............................. AGGTCGTGGCCGAGGACGTTCGTGGTGTCGAG 2108 29 96.6 32 ............................G GTTAGACACGACCCCCGACAAGTTGCCCGGCG 2169 29 100.0 32 ............................. TCATCCACAGTGGAACGCCGACGGATCCGTTA 2230 29 96.6 32 ............................G ATCGAACGAACTAGGCTGCCCGACCGGACGAC 2291 29 96.6 32 ............................G GTTCGCCACGTCATCGGCGGTGGCCGGATCGA 2352 29 96.6 32 ............................T GGCGGGCGCACGGCGTGCACAGCAGGGACTCG 2413 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 40 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GTCGCGCCCGGGCCGGCAAACACCACGGCATCA # Right flank : CCGGACCGTGTTCGGCCACGGCGTCCACTGGCAGCCTCGTCGTGCCCGGTGCTCAGCGGTTGGCCGCGTCGGCGAGGGCTCGCTCCACCGGGACCGGCCGCCCCAGGTAGAACCCCTGTCCGAGGGGCACGCCGCACTCGACGAGCGCGTCGCGCTGCTGCGCCGACTCGATCCCCTCGGCGATGACGGTGCAGCCGTGCTCACGTGCGAACTCGACCAGCGAGCGGATCGAGGCGCGGCGTGCATTCTCTGCCTCGACACCGGCCAGCGCCGCTCGGCCCAGCTTGAGGAAGCCCGGCTTCAGTGACTCCACCCGAGCCAGGGAGTCGTACCCCGCGCCGGCGTCGTCGACCGCGATCCGCACCCCGGAGGGCAGGCGGTCGAGATCCGCCCGGTCGGCTTCGGTGATCTCCAGCACCAGCGGCCGGGAGCTCTCCGCCAGCAGCGGTTCCAGCTCGCGCGGCCGCCGCAGCAGGTCGCTGGAGACGTTGACCGCCAGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 3786-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONU01000018.1 Planosporangium flavigriseum strain NBRC 105377 sequence018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3785 29 100.0 32 ............................. TCAGCTCGACCGACTGCGCGATGATCGATCAC 3724 29 100.0 32 ............................. ATGCTTCGACGTACGCGTGCCGTTGCCACGCG 3663 29 100.0 32 ............................. GCCCTGCTCGACGGGCAGGCCATCGAGTGGCT 3602 29 100.0 32 ............................. AACGCCAGCCCGCCGGCGGATCCAAACTGGTC 3541 29 96.6 32 ............................A TCGGGCTGCGTCACGGGACCTCCGGCGTATCG 3480 29 100.0 32 ............................. AGGCCGCCGAGCAGTTGGCCACCCAGATCATG 3419 29 100.0 32 ............................. TCGGGCTTGAGGGCGTCCTGGAAGACCCGCTC 3358 29 100.0 32 ............................. CACTGCCGCCGTGGCGGGCAGCTTGCGGTTCT 3297 29 96.6 32 ............................G CTGGCCGCCGGTATCACCTCGACGGCCACCAC 3236 29 96.6 33 ............................G TGCATGAGGTCGCCCACCGCGCGGAGCAGCTCG 3174 29 100.0 32 ............................. GCCGGGGCCTCGCTGGCGTTTACGGGTCGCTC 3113 29 96.6 32 ............................G AACTACTGCAAGCTGGCCGGCGCGAACGACGC 3052 29 100.0 32 ............................. ATGTCCAGCAGCTCGATCGTCTGGTGGGGTTG 2991 29 100.0 32 ............................. GGTGCCGGGCTGGTGCGGTCGTCGATGCCGGG 2930 29 96.6 31 ............................T CACACCCAGCCGTCCGGCGGCACGATGGTGT 2870 29 100.0 32 ............................. TGCGCCATCCAGCTCACCAAGGCGCAGATGGG 2809 29 100.0 32 ............................. CAAGGAGTCAGATCGTGACCTACCCGCAGCAG 2748 29 100.0 32 ............................. GAGTCCGTGCGCGCCCTGGCCGGTGCCGCATG 2687 29 96.6 32 ............................G GTTGTGGCCCTGACCTGCGACGTTCAGAAGTT 2626 29 100.0 32 ............................. GAGACGCTCATCTTCTTGCCCTTCTTGGTGAT 2565 29 96.6 32 ............................G CTGGCGCAGCTCGCCTACGCGTACGGGTGGGA 2504 29 100.0 32 ............................. CGGGCGCTGACGTGGTGCAGCGGTGGGAGGAC 2443 29 100.0 32 ............................. CCCACACCGCGACTGCGTACTCGTCGGCCTGC 2382 29 96.6 32 ............................G GGGATGCAGTCGCGTCCCAAGCCAGCGGTACC 2321 29 100.0 32 ............................. TCGTCGCTGCGATCTTGTGGCCCCTGGCGTAC 2260 29 96.6 32 ............................G AAGGCTCACGTACGCCACCGGTGCGGGCTTCC 2199 29 100.0 32 ............................. GGGCAGCGAACCTGCATCGAGGGATGCGTCGG 2138 29 100.0 32 ............................. ACGGACCGGTGGATCAGGATCGCCGCGGATCC 2077 29 96.6 32 ............................G TTGTGGGTGTCCATCGGGGGGACATCGGAGGC 2016 29 96.6 32 ............................G GGCCGGCTGACTGCCCGTCTGCGCCGGGGCAG 1955 29 96.6 32 ............................G GAACTGCGCGATCGGCACGCCGAGGACCCCGG 1894 29 100.0 32 ............................. TGCAGTACCTGGTCGGTACCGTCCGGAGTGAA 1833 29 100.0 32 ............................. GAGTACTCGACGTCGCGGACCATCTGCTTGAG 1772 29 100.0 32 ............................. CTGAACCCGGTAGTGAGCGGCACGGCCACGGT 1711 29 100.0 32 ............................. GGCCTGCCGCAGCCGGTCACCCGTGACCAGGA 1650 29 96.6 32 ............................T ACGACCTTGCGCGCGATGGTCCGACGCGTCCA 1589 29 96.6 32 ............................G GTGCGCGGGCTCGCTCTCGGCGTCGGCAACAT 1528 29 100.0 32 ............................. GATTTCGCCGCCACGCTCCCGGCCACCTCGCC 1467 29 96.6 32 ..............G.............. GACACGGTGATCGAGTACCGCTTCCCGGCGCA 1406 29 96.6 32 ............................G TGGTGGACCGCCTACCAGGCCGGATACTCGCC 1345 29 100.0 32 ............................. GACCCCGGCGCTGTGTCTGACGGCTCGATCTG 1284 29 96.6 32 ............................G ACGAACGCCGCGCTCTCGTCGGCGAGGCCGCA 1223 29 96.6 32 ............................T CTTTGACGGACTTTCCGAGCAGCGCGAGGCTC 1162 29 100.0 32 ............................. ACGGTACGGGGAGACCGGCCTGGCGCCGTACC 1101 29 96.6 33 ............................G TATGCTCCAATGCCGGGAACATCCGCAGGGTGC 1039 29 96.6 32 ............................G TCCCTGCAATGGTCGGTGGTCGGCAACAGCAG 978 29 100.0 33 ............................. GGAAATCGGCCGCGGCCGCCAGAACGGCGGCGA 916 29 100.0 32 ............................. GCGATCGCCTACGCCCGCCAGCAGCTGGGCTC 855 29 100.0 32 ............................. GCGTTGGCGTCACAACCGGACTGCGAGCCGAT 794 29 96.6 32 ............................G GAGATCACTGTGGCTGAGATCGTGCTCGCCGA 733 29 100.0 32 ............................. GACGGGTACCGCGTGGTACGTACCCGGCCGGT 672 29 100.0 32 ............................. GTCGGCCTCGAAGGCGACTACCTCGAAAACCC 611 29 100.0 32 ............................. GGCCGGACGCGCGGCCGGGCTGGAGCCGCTAC 550 29 100.0 32 ............................. CCGGGCGCCGCGAGGGAAGCCGCCATGATGCT 489 29 100.0 32 ............................. AGGTAGTAGGCCTTGCGGATGGCGTGGGGTCC 428 29 100.0 32 ............................. ATCGAAGACGCCTTCGCCGAGGCGCAGCTCCC 367 29 96.6 32 ............................A CACTGGCACGCCGCCGGTGCTGGCATGCCCGG 306 29 96.6 32 ............................G TCCGGCAATGACGTCTCACGACGGCCCTTCGC 245 29 96.6 32 ............................G GCACGGCGCCGACGGAGGAAAACCAGTACGGC 184 29 96.6 32 ...........A................. GGGGGCAGCCAACAGGACTAAGGCGCGGCAGC 123 29 96.6 32 ...............C............. GACTCGACCAGTACGCCGCCGATACGGAACGA 62 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 62 29 98.5 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TCGCTTGGCCTCTGGGACGATAACGGCTTCGAGGTCGCTGCCGGTCGCAACTACGCCGACATCGGCGACGTCGACTTCTGATGACCGTCATCATCCTCACCGCGTGCCCGCCCGGCCTACGTGGGCACCTCACCCAATGGTTGCTGGAGATCTCCGCGGGCGTGTACGTCGGGCACGTCAGCGTGCGTGTGCGCAGCCGATTGTGGGCTCGGGTGGTTGAAATGGCCGGTCCCGGTCGTGCCTTGATGCTCTTTGAGGTACGCGGCGAGCAGCGACTTTCTTTCATGGCCCATGACCATCACTGGATTCCAGTTGACGTGGATGGTGTGACCTTGATGCGCCGCCCCAGCGAGCCGTCGGCCAATCCGGCGATGCCAGCGGGCTGGAGTAAGGCGGCTAGACGTCGCCGGTTCGGGCACCGCGGACGGTCGGCGTAGCCTGCGTTGCGTGAAGTGAACGAAATCCGAGATCTGGATCTTCAGAACCGCAGGTGAACAAGT # Right flank : CGCCTCGAACAACGCGATCCGCGCGCCGAGACCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24123-20089 **** Predicted by CRISPRDetect 2.4 *** >NZ_BONU01000018.1 Planosporangium flavigriseum strain NBRC 105377 sequence018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24122 29 100.0 32 ............................. TCGTTGAACCAGGCCGGCGGGCCGGCGCTGGT 24061 29 100.0 32 ............................. AGAGCGGCCAGCGCTCCACCGCCAGCCGCCCC 24000 29 100.0 32 ............................. TGCCCCAGCTGCGACGGATCCGGTGGGCCGTC 23939 29 96.6 32 ............................G GCGGTCGCCCCGGGCGACCAGGGCAGCGGCGC 23878 29 96.6 32 ............................G CTTGACAGCCTCGCCGACGCGTCCTCCCGCAT 23817 29 100.0 32 ............................. CGTCCATGGACCGCTGGACAGTGAACGTCTGC 23756 29 100.0 32 ............................. CTGGCACCCGCTAAATAACTACATAGTGCGTT 23695 29 100.0 32 ............................. TACCAGCCGGCGCAGGTGCTGCCCTACATCGG 23634 29 100.0 32 ............................. CAGCTGACCCCGTGCCAGGGCTGGTTGAGCTG 23573 29 96.6 32 ............................T GCTTCGGCGATCTGCTGACCCACCCGGTAGCC 23512 29 96.6 32 ............................A CGTCGGTGGGTGTCGCGGTTACGCCGTGACCG 23451 29 100.0 32 ............................. CCGGCGGCCTTGACTTTGGCCAGGTCGATGCC 23390 29 96.6 32 ............................G CCGAACGGGGCGACGATCACGCCGTCGGTGTC 23329 29 96.6 32 ............................G TACTGCACCGGGCCGGTACGGCCGGTGAAGCG 23268 29 96.6 33 ............................A GCCCAGCAAGCGAGTACCCCGAGCCCGACACCC 23206 29 100.0 32 ............................. CCGGGGGAGTGGCAGATGGAGCAACGGGCCGC 23145 29 100.0 32 ............................. GCGATGCGCGCCTGCTCGGCCTTCACGCGTAG 23084 29 96.6 32 ............................G GACGCCACGACGTGGCTGGTGCGAGACCACAA 23023 29 100.0 32 ............................. CTCGACGCGTACACGGTGCTGCCCTAGCAGGG 22962 29 100.0 32 ............................. CGTCGGTAGGTGCCGGTCGCGGTTCCCTCGGT 22901 29 96.6 32 ............................G GAGGCCACGATGTATCAGGTAATGGGGCCGGA 22840 29 100.0 32 ............................. TTGTTGGCGTCCCGCCAAACTGGAGAGCATGA 22779 29 100.0 32 ............................. CTGTGCACCGGTGTGGCCACCGAGATGGGTGA 22718 29 96.6 32 ............................G CCATGAGCCTCGAGGAAGCCGGCTACGACGTC 22657 29 100.0 32 ............................. GCCTGGTAGGACACGCGCTCGCCGGGGGTGCC 22596 29 100.0 32 ............................. CGGGCCGGCACGCCGAGCATCCGCAACGATTT 22535 29 96.6 33 ............................G GTTGACCCATGGGCTGGACAGCTGGCGGGTGCC 22473 29 100.0 32 ............................. CAGCGCGCCGTCCTGCACGCGGGCGTCCTCGG 22412 29 96.6 32 ............................A CGAGGTCGCCGGGCATCGGGTTGACCACCGGG 22351 29 100.0 32 ............................. GAACTGGTGCGCTGGCTGATCACCGCTGGAGC 22290 29 96.6 32 ............................G CTACGCATCCGGGGGCAGGTGGCAGCCAAGAC 22229 29 100.0 32 ............................. GTGAACCGCACGCTCTCGCCACCGTCGCCGTT 22168 29 100.0 32 ............................. GGTCGGCGCGGGTGAGCACACCACCCGCGTCG 22107 29 100.0 32 ............................. CGTCGGGCTACGGGCGGGTACCCGGCGCCGGG 22046 29 96.6 32 ............................T CGATCACGGGTCCGCCGCCGAACGGATCAGGC 21985 29 100.0 32 ............................. AGGGCCGCGTCCACGAACTCATGGCCCCCGCC 21924 29 100.0 32 ............................. TCCAACGGCGGGTCGCGCGCGTTGGGCGAGGC 21863 29 96.6 32 ............................T CGCCGGGGCCGGTGACCCATGGTCCAGAAGAA 21802 29 100.0 32 ............................. TGTTGGTGGTGCTGATGGTGTGGGTCGCGCCC 21741 29 100.0 32 ............................. GACACGGCGCTGCGTCACTCCGCGGTCTGGGC 21680 29 100.0 32 ............................. TACGCCCCGAACTTGCCGACCGAACGTCAAGA 21619 29 79.3 10 .......................AACGGT CGGAGACACC Deletion [21581] 21580 29 100.0 32 ............................. GGTCACACGGTGATCGAGTGCCGCGGCGGTAC 21519 29 96.6 32 ............................T GAGTCGATCGGCCTGCTCAACCCGTCCAAAGG 21458 29 96.6 32 ............................G GTCGTGTGCCGCTTCAGCCGGCCGCGGGCGTC 21397 29 100.0 32 ............................. TGCTGGCTACCGAGACACGGCTGCCCGTAGGC 21336 29 100.0 32 ............................. TACATCTATCACGGGCCGGACTGGGACCAAGG 21275 29 100.0 32 ............................. GGGGTCATCTTCCACAAGTTCGGCACCGACGA 21214 29 96.6 33 ............................G CGCAAGCGGGGCGTCCGGGAGCTGGTCAACGCA 21152 29 100.0 32 ............................. CCGGTCTGGCCTCCGGGTCGGCGCAGCTCACC 21091 29 100.0 32 ............................. GCCCTGACGTGCTGCAAACGGTGACCGGGAAG 21030 29 100.0 32 ............................. GACGCCGGGAACACCGCCATGCCCCGCTCGTC 20969 29 100.0 32 ............................. TCCGCGCCCCGCTCCGCCCCGCGTCGGCCGAC 20908 29 96.6 32 ............................A CCAGACTCACGCTCGCGACGACCACCAAGCCA 20847 29 100.0 32 ............................. GTCACCGCTGCGACGAGAACGGTTGCACCGAG 20786 29 100.0 32 ............................. GTGTCGGTGCGCACGGCCAGGACCTCGTTGAC 20725 29 100.0 32 ............................. GACCTGGTCGGATGGGCCGGTGGCCTACCCGG 20664 29 96.6 32 ............................T CAGGGTCGACACGAACAGCGAAGTCGTGTCGG 20603 29 100.0 32 ............................. TCTCGGCTGATGCCCGATCCGTTGGTTACGGC 20542 29 100.0 31 ............................. TCGACCACGTCGATGTCGTGGCAGCCGAGCC 20482 29 100.0 32 ............................. AGCGGCGACGGCGACGGACGACCGGGCGAACC 20421 29 96.6 32 ............................G GTGTCCCGGATCGCCGACACGATCCCGGTGAC 20360 29 93.1 32 .....................G......G GCGTACCGGAGCGCGGCGAAAGCGGCCAGCTC 20299 29 96.6 32 ......................G...... TTACGAGGCTCTCTACCGGGCTCGGGATCGTC 20238 28 93.1 32 ........-...................A CGGCCGCCGACATTCGGAATCGAGTAGGCCAC 20178 29 89.7 32 ...........C.........G..A.... GCCGACCAGCCCAAGACCGACGAGCAGCGGCA 20117 29 69.0 0 ...............C....TCCCAGG.G | ========== ====== ====== ====== ============================= ================================= ================== 67 29 97.8 32 CTGCTCCCCGCGTACGCGGGGATGGTCCC # Left flank : GCATTGATGACGTGGTGGCATCAAAGGCAGCGGCCCTCGTCAGCCGTCGAGAGGTACGCGACTACATCGACGGGGCCGCAGTACTCGGCCGCTACAGCCTGGACCAGCTGCTTGACCTCGCGCACCAGCACGATCCCAGTCTTGAGCCGGCCGACGTCATTTTGGTTGGGGCATACCTGGACCGTTTGAGTGATGAGTGCTTCCAGCGGTATGCGCTCGGTCCTTGACAGCTGGCCGCATTACGAGCCACGTTCGGTGTGTGGCCCAGGTCGGGAGGCTCAGCTTGACAGAGACATGCTGAATCCGGTCTATACCTCGGCTATGGGAGGACCCCAGGCCATCCCCGATGCGCGGCCGCGGCGCCGGGCTAACCTCTCTGGTGATGATGCCCGCTGAGAAGTACGCAGCGACGCCGCTAGGCAACGTGGTCGGCGTAGCCTGTGTTGAATGAAGTGAACGAAATCCGAGAGTTGGATCTTCAGAACCGCAGGTGAACAAGT # Right flank : CCGCGGGTCCATGATGAGAGGCAATGCGCAGTCCCAGCCTGTGCAGACGGCGGTGGTGAACAAGGGCTGCCGGATGCTGGCGCCGGGGCTGCTGATCACCGAGGCGCCGATGGGGGAGAGCAAGGCCGCCTGGCGGCGGTCGAAGTGTTCGCTGCCCGTGGCAGGGTAGGCGGTTGTTGCATTGCGTCGCCGACGCATGCGGCCAGTAACGTGATGTTCCGACGGCCCTAATCTGGCCGGGGCGGTTGCCGGTGCCGGATACCGATTGTGGTGCCCGCGATGTGGGTTTGGCTTATGGCAGGGCTCGCCCGAATGCGGACTGCGCGCGGTTGTGCCAGCACGCTTTGCCCAGCTTCACAACACCATCGTTAAGTCCAGCGCTGGGCGCTCCAGGGCGTGCGATGGTTCCTCGTGGAGTAGTTCGATCAGGAAGAGACGGTGAGGGTACCTGCGGTGAGTCCGTCGCGTATCTCGCGGGCGAGGGCGGTGCCCATCGCGGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //