Array 1 25205-26417 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVDY01000034.1 Bacillus thuringiensis strain AFS059914 AFS059914_115_A9_Contig34_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================== ================== 25205 32 90.6 35 ............A.T......T.......... CCTTAACAATCCCCTCAATCGAACTCCCCAACCCC 25272 32 87.5 35 ...........CA.T......G.......... GCTTGAGCGTCATAGCGCAATGACGGATTGAGCGC 25339 32 100.0 35 ................................ GTGTAAGTAGCAAAGACTAAAATAAGGGTAGACAA 25406 32 78.1 34 ..TA........A.T.A..T.G.......... CTTTGTAAAAGAAATGATGAAAGAAAACATTTTT 25472 32 90.6 35 ...A........A........G.......... TCTAGGCGCAATGCTTTTAAACGTTGTCCGAACAT 25539 32 90.6 34 ............A.....A..G.......... AACGATAACATCTCAAACACCATTTAAACCTAAA 25605 32 84.4 33 ............A.T.A....G.A........ CGAACAGCTCCTTTTATCCATTATGAAATCGGT 25670 32 93.8 33 ............G........T.......... TTAACATCAGCTAACGTTCGTAGCGCATAATAA 25735 32 87.5 33 ............G.T....T.T.......... TATTTAGCTAGAGTGATAAACTCCTTATGCATT 25800 32 93.8 33 ............A........G.......... AAAAAAACGTAAATACAAATCCTCTACTTTCCC 25865 32 87.5 33 .....G......G....G...A.......... AAACAATGTATACGGCGTTAAATGAACAGCAGA 25930 32 100.0 33 ................................ TTTGTATCGTTCGCTGTCTTAGCTGTCTCTAAA 25995 32 71.9 98 ..TA........A.TAA...AT........G. CATAATGGTAAAGTTTTAGGTTATGACCGTTTTGTCGCACCTTTTGTTGGGGAGGAATTGAACTCAGTGTTGCTACGCTTAGTGGGCATCCCTAGATT 26125 32 75.0 34 C..TTCA.....GCT................. GAGAAAACACCGCATATGTGCGTGTCGGGTATGA 26191 32 90.6 35 ..........C.G........G.......... TCACTAGTTACAAATTAAACGGGGGTATTCCCCTA 26258 32 84.4 34 ....TG......G......T.T.......... GCATCTTGTAGCTATTATTATGTATGCTATATTA 26324 32 81.2 30 ....A...C.....G......G..G..A.... TTGCTATTACTTATCTTGTTGTTAACATTC 26386 32 75.0 0 .........TC.G.G......TA.....CT.. | ========== ====== ====== ====== ================================ ================================================================================================== ================== 18 32 86.8 38 GTCGCACCTCTTTTAGGTGCGCGGATTGAAAT # Left flank : CCTAGGGTACATCGCACCTCTTATTGGTGCGTGGATTGAAATATCCGTACGATCATATACATCATTAAAATTTTCAGTCGCACCTCTTCTAGGTGCGCGGATTGAAATATCTATTACAACATCCGTTGTAGGTTTCATTTCGTCGCACCTTTTGTTGGGGGAGGAATTGAATTCAGTGTTGCTACGCTTAGTGGGCATCCCTAGATTCTCTTCACTCTTGCTGGTGCGCGGATTGAAATTTTAAAGGGACATACGGTAGGACAGATCATATAATCGCACCTTTTATTACTGTAAGAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACGTATAGCACACATGAAATTCCTCGTACATTCGCACCTTAATTTTCATAATTTGTGAGTAGAATTTTTGATTTTCCATACAAATTTCTTTGTACAATTAAAAAATTGCATACTTTTGAACCGAATTAACATATTTTTATATGATTTTGAATAAAAATCGGT # Right flank : TTGAAAGCTAATTGAGTTGACACAATTAGAATTGAAGACATTTATCAAGAAATATTAGATGATAAATGTAGAAATGCCCCTCAATACAATTGGAGTGAAGATCTAGACAGGGAATTAACAAAACGTATTACTAGATATTTACACGAAGTAGTTTTAAACTGGGACACTGAACAGCTTATTATTACAATGTTCTTCAAAATTCGAATGTTAAACAGTTTAATATCTCTTAATTTATTAAACTTATTCTCATTTCTTCATAAATTTAAAAAAGCTTAAACCCTTGTGTACCAATGGATTTAAGCTTTTTATTTTTTTAGAATATCCTTTGCAACAAGTTGCCATTAAAATAGTGTATCAGCAACTTGTAGCTATTAATATGAATGCTACATTCCACGAAATTATTACAGTTTTTTAGTTTTCTATTTTTATTATATGCTCTATTTTTATATTTATTCTTTATTTCGAAGTTTGAAAAATAGAAGTTTTGGACAAGTTATAAC # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.34, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTTTAGGTGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [20-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //