Array 1 123343-123703 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSW01000001.1 Clostridium botulinum strain BrGarc Cbot0021o-BrGarc_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 123343 29 100.0 37 ............................. CCATTTAGATATGCTTTGTATTTTTTTAATGTATTAA 123409 29 100.0 37 ............................. TTCTTTACATTTGATGTTATAGAACTTTCACTGTTAA 123475 29 100.0 36 ............................. TCTTTTTTAGTGGTCTTGTATCGTTATGAGCTTCTA 123540 29 93.1 37 ..............AG............. TCTAATTGTGTAGTATCAAATCCATTAGCCATAATTG 123606 29 93.1 38 ..............AG............. AGTCTAATTATTATAACAGCATTTTCTGTGTAAGGCTG 123673 29 89.7 0 .......A......A.............A | TA [123695] ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.0 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : CTAATGCTATTGTTAAAGGACTAGTAGGGAAAACTACAAGCAATAGCACACCAAGCGAACCAACAAATAACAATAATAGTTGGATTAATTTAGATGGAAGAACAGGTACAATAAATACACCAAGCGGTGTAAATGTTAGAGAAAAGAAATCAACTTCTAGCAGAATATTAGGTGCTTTACCTAATAGTTCAAAGGTTAACTTATATCGTAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGGGGTTATGTGTATGCTAAATATGTAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGA # Right flank : AATGGTAGTTGTAGCTTATGCCCTATAGCTATTATTTTTTGCATTTAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTAATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGCATGGGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAGGTATAATAATCTTAATCATGTATAGAGGAATTATATGAAATATGTAGAATAATACAAATTAAGTTCGCAACTATGCTTAATTACATAAGCACTAAGTCATAAACTTAAAGCCCTGGGATAAACCAGGGCTCTTTTTAAAATTACTCTTTGCTATCTTTTTTCATTTATATTAAGATATTCCATTAATCCAGCCTGTAATATTTGCGAAAAATTAACTTTGTTTTCCTCAGCCATTTTATTCAACCATGAAGGTATTGTCAATGTTTTTTTTACTGCTTTATTATCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 215881-216369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSW01000001.1 Clostridium botulinum strain BrGarc Cbot0021o-BrGarc_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 215881 30 100.0 35 .............................. GTAGTTAAAATTGGTTCATATTCTACACCTATTTT 215946 30 96.7 36 ........A..................... TAGTTAATATCCTCGAGAGTTCTTAACCAAAAATTC 216012 30 100.0 35 .............................. CCTAATTGTTGAACATTAGTATTACTCTTTTGTGA 216077 30 100.0 36 .............................. TATACTTAATCATTAATTCCCTAAATAGAGAAGTCA 216143 30 90.0 34 ........T.......A..C.......... ATTCTTTATAGTATTGTAGTAATAATTCATTAAA 216207 30 93.3 35 ........T.......G............. TTTTGCTTATTTTACTTGTGCATTTACTACAATAT 216272 30 93.3 36 ........A.......A............. TTAAAACCTTGAAAATCTTCTAAAACTATAATGTTA 216338 30 86.7 0 ........T......GA............A | TA [216362] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 95.0 35 GTTGAACAGTAACATATGATGTATTTAAAT # Left flank : TATGGCGTGTCGCAATTGTGGTTATACCATACCATATAATAATTGATTTTAATAACGATTACTAGATAAAAGAAAAAAGATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATATTAAATACAATGCTTCCTAATAGGTTAAATATAAATGTACTTATTTAAACAAAAGAACCCCAATAAATGAGGTTCTTTTTGTATTGGTGCTGTATATTGGCTTATTTTTATTACATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AATAGTAATTGTAGCCTATGCTATAGTTATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATACTAAATATAAGATTTTCTATAAGGTATTGACCTTCTCCAAAATACAAAAGAACCCCAATAAACGGGGTTCTTTTTGCGTGGATTTATATATATTGGTATAGTGTCTTGGGCTGTTTTTATTATATCCAGATATAATAAATTTAATCACACATAAAGTTGTTACATAAGTTAAGCATTATGAGAATCATCTATAGTGTTAACTTTGTTGAACTCATTTAAAAAATCTTCATATAAGTTTTCCCTATGTTTTTGGCTTTGGCCTGTTATGATTTCAACTAATTTACAATGTTCTATAGCATTTTTTATGATAGTTCCCATATCTAAATTATCATTTGGTGATTCTAAATAACTAAGTTCACCCATAATTTTTTTACGTTGATTTTCAGGATATTTTGATATAGTATTTTGATAAGCTTCTATTATGGAT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 319570-319794 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSW01000001.1 Clostridium botulinum strain BrGarc Cbot0021o-BrGarc_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 319570 30 96.7 35 ............G................. TGAAAAACATTAGAACCACATCCACAAGGGTTTCT 319635 30 100.0 35 .............................. GCTAAATTCTCATAAGAACCACGCCATCTGTCCTC 319700 30 96.7 35 ........T..................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 319765 30 93.3 0 ........T................C.... | ========== ====== ====== ====== ============================== =================================== ================== 4 30 96.7 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATCCCGCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCCTCCTAGAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCCGTACAATATTTCTCATAGAACTATTATATGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATTTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTAAAATAAAAGAAAAGAACAAAAATTTTTCCAACCGACTTTAAGTTGAAAATTTATGGAGACTATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATCAATGGTTTTATGATATTCTTGAAATTAAGGAATGGCTATTTTACTATG # Right flank : TACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGGTATTGACTTGTAGTCTAAAGTTGCACCATAAGAAGGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATACGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCATAACCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 323585-323877 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSW01000001.1 Clostridium botulinum strain BrGarc Cbot0021o-BrGarc_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 323585 30 100.0 35 .............................. CCTCATTTTTGAATTATGAATTACTTATTGTTTTG 323650 30 100.0 36 .............................. AATAGAAGGGCTTAACTATAGATTCCCGATACTTGA 323716 30 100.0 37 .............................. TAATCTTCTAAGTAAGGTATCATTACTGACTTAACCT 323783 30 100.0 35 .............................. ACTACCTAATGTTCTTTATTTTAAAATCACAAGTA 323848 30 86.7 0 ...A...........A....A........C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTACAAAATTGACATAATATGATATACAATGTTTGTGTTCATCAACTAAGAAAGACATTTCTACCTTTCTTAGTTGATGAACAATTTTCTTATTTAACGACTGAACTATAAAATCAAATAATTTTTCTAAATGCTGTATTATTCAGAAATGAACTTTACGGCATTTTTATGTCGCAATACAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGCGCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CTGTTTAGTTACTGCAGATATTCGTTTTTAATATTAACATATGAATTAAAAATTAATATGATATATGACAAAAATTATTAAGAGTCTTAGAAGAATCTAAGGCTTTTTATTTTATGTAAAGTTTTAAAATGGAATATAATAGCTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGATATAATATAGATAAATTTGTATAAAGACATGTATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGACCTTGGCTGCAAAATAATGGGGATTTAGATTTATTTACGCGTAGATTGGAAGATAATTTGGAAAAGAAATATAAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAAAGAGCATAGAGTTTAAAAATAGAGAGCCAATGCATTACGACTATAAAGGTATAAAGTTATTAGCAAATAAGGTAAGTATA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1602707-1602353 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSW01000001.1 Clostridium botulinum strain BrGarc Cbot0021o-BrGarc_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1602706 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 1602639 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 1602575 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 1602511 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 1602447 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 1602382 28 89.3 0 ......A......A.............A | TA [1602357] ========== ====== ====== ====== ============================ ======================================= ================== 6 28 95.8 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCAGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATGTAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : ATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTGAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //